Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv12075 Davidia involucrata HOM05D001935 ORTHO05D010109 3.2e-39 164.9 81 100.0
Dinv10085 Davidia involucrata HOM05D001935 ORTHO05D010109 4.1e-31 137.9 74 89.2
Dinv10084 Davidia involucrata HOM05D001935 ORTHO05D010109 2.3e-29 132.1 74 85.1
Hma1.2p1_0486F.1_g163095 Hydrangea macrophylla HOM05D001935 ORTHO05D010109 2.1e-22 109.0 74 67.6
Hma1.2p1_0486F.1_g163120 Hydrangea macrophylla HOM05D001935 ORTHO05D010109 2.1e-22 109.0 74 67.6
CSS0010042 Camellia sinensis var. sinensis HOM05D001935 ORTHO05D010109 1.5e-20 102.8 74 67.6
CSS0012652 Camellia sinensis var. sinensis HOM05D001935 ORTHO05D010109 1.5e-20 102.8 74 67.6
Haze_05029 Corylus avellana HOM05D001935 ORTHO05D010109 3.3e-20 101.7 77 59.7
Cfa005813 Carpinus fangiana HOM05D001935 ORTHO05D010109 2.1e-19 99.0 77 58.4
TWI36G1013 Tripterygium wilfordii HOM05D001935 ORTHO05D010109 6.2e-19 97.4 81 58.0
Cpa.g.sc18.27 Carica papaya HOM05D001935 ORTHO05D010109 1.2e-17 93.2 79 60.8
Oeu038015.2 Olea europaea HOM05D001935 ORTHO05D010109 1.2e-17 93.2 74 59.5
COL.COLO4_23245 Corchorus olitorius HOM05D001935 ORTHO05D010109 5.8e-17 90.9 78 55.1
TAR633G2657 Trochodendron aralioides HOM05D001935 ORTHO05D010109 7.6e-17 90.5 60 70.0
Manes.01G226900 Manihot esculenta HOM05D001935 ORTHO05D010109 2.2e-16 89.0 74 56.8
Potri.006G105500 Populus trichocarpa HOM05D001935 ORTHO05D010109 2.2e-16 89.0 78 55.1
Potri.006G105600 Populus trichocarpa HOM05D001935 ORTHO05D010109 2.2e-16 89.0 78 55.1
Thecc.01G311900 Theobroma cacao HOM05D001935 ORTHO05D010109 2.2e-16 89.0 78 52.6
CSS0036092 Camellia sinensis var. sinensis HOM05D001935 ORTHO05D010109 2.9e-16 88.6 75 64.0
Duzib138G0891 Durio zibethinus HOM05D001935 ORTHO05D010109 1.1e-15 86.7 78 50.0
GSVIVG01028106001 Vitis vinifera HOM05D001935 ORTHO05D010109 1.1e-15 86.7 77 54.5
Potri.016G128800 Populus trichocarpa HOM05D001935 ORTHO05D010109 1.4e-15 86.3 83 51.8
Sabra06G0082000 Salix brachista HOM05D001935 ORTHO05D010109 1.4e-15 86.3 79 53.2
Ciclev10022487m.g Citrus clementina HOM05D001935 ORTHO05D010109 1.9e-15 85.9 79 59.5
TAR362G0690 Trochodendron aralioides HOM05D001136 ORTHO05D010109 2.4e-15 85.5 64 64.1
Gohir.A12G125800 Gossypium hirsutum HOM05D001935 ORTHO05D010109 7.1e-15 84.0 76 47.4
Gohir.D07G132400 Gossypium hirsutum HOM05D001935 ORTHO05D010109 7.1e-15 84.0 75 52.0
Gohir.D12G129300 Gossypium hirsutum HOM05D001935 ORTHO05D010109 7.1e-15 84.0 76 47.4
Gorai.001G143800 Gossypium raimondii HOM05D001935 ORTHO05D010109 7.1e-15 84.0 75 52.0
Gorai.008G140400 Gossypium raimondii HOM05D001935 ORTHO05D010109 7.1e-15 84.0 76 47.4
QL12p020164 Quercus lobata HOM05D001935 ORTHO05D010109 7.1e-15 84.0 77 51.9
EL10As5g23517 Beta vulgaris HOM05D001935 ORTHO05D010109 2.1e-14 82.4 81 53.1
Atru.chr5.1021 Acer truncatum HOM05D001935 ORTHO05D010109 2.7e-14 82.0 78 51.3
CiPaw.08G090700 Carya illinoinensis HOM05D001935 ORTHO05D010109 2.7e-14 82.0 77 49.4
Atru.chr5.1024 Acer truncatum HOM05D001935 ORTHO05D010109 3.5e-14 81.6 78 51.3
Gohir.A07G128000 Gossypium hirsutum HOM05D001935 ORTHO05D010109 3.5e-14 81.6 75 49.3
Rhsim13G0005200 Rhododendron simsii HOM05D001935 ORTHO05D010109 3.5e-14 81.6 77 55.8
MELO3C015930.2 Cucumis melo HOM05D001935 ORTHO05D010109 4.6e-14 81.3 76 52.6
Rhsim03G0153200 Rhododendron simsii HOM05D003369 ORTHO05D004089 6.0e-14 80.9 72 54.2
ClCG09G005160 Citrullus lanatus HOM05D001935 ORTHO05D010109 7.8e-14 80.5 76 52.6
Gorai.007G123300 Gossypium raimondii HOM05D001935 ORTHO05D010109 7.8e-14 80.5 78 46.2
Gohir.A11G109500 Gossypium hirsutum HOM05D001935 ORTHO05D010109 1.0e-13 80.1 78 47.4
Sabra16G0129700 Salix brachista HOM05D001935 ORTHO05D010109 1.0e-13 80.1 84 50.0
Rhsim13G0005300 Rhododendron simsii HOM05D001935 ORTHO05D010109 1.3e-13 79.7 60 65.0
CsaV3_7G029910 Cucumis sativus L. HOM05D001935 ORTHO05D010109 1.7e-13 79.3 76 51.3
Gohir.D11G115100 Gossypium hirsutum HOM05D001935 ORTHO05D010109 1.7e-13 79.3 78 44.9
MBI18_g28444_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 2.3e-13 79.0 75 46.7
MBI19_g24818_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 2.3e-13 79.0 75 49.3
Actinidia21004 Actinidia chinensis HOM05D001136 ORTHO05D001144 5.1e-13 77.8 60 63.3
CiPaw.07G116400 Carya illinoinensis HOM05D001935 ORTHO05D010109 5.1e-13 77.8 78 50.0
PGR044G2318 Punica granatum HOM05D001935 ORTHO05D010109 1.5e-12 76.3 76 51.3
Sed0028026 Sechium edule HOM05D001935 ORTHO05D010109 4.3e-12 74.7 74 50.0
SalBow3G1122 Salvia bowleyana HOM05D001935 ORTHO05D010109 7.3e-12 73.9 75 53.3
Ah.11g049310 Amaranthus hybridus HOM05D001935 ORTHO05D010109 3.6e-11 71.6 79 46.8
Psat3g020520 Pisum sativum HOM05D001935 ORTHO05D010109 4.7e-11 71.2 87 42.5
EL10As5g23516 Beta vulgaris HOM05D001935 ORTHO05D010109 8.1e-11 70.5 82 45.1
Ca_09205_v3 Cicer arietinum L. HOM05D001935 ORTHO05D010109 8.1e-11 70.5 65 46.2
Aqoxy2G01830 Aquilegia oxysepala HOM05D001935 ORTHO05D010109 1.8e-10 69.3 75 45.3
Rhsim04G0219100 Rhododendron simsii HOM05D003369 ORTHO05D004089 2.4e-10 68.9 73 47.9
Glyma.03G218900 Glycine max HOM05D001935 ORTHO05D010109 4.0e-10 68.2 92 39.1
Phvul.001G212300 Phaseolus vulgaris HOM05D001935 ORTHO05D010109 5.2e-10 67.8 63 49.2
AUR62011822 Chenopodium quinoa HOM05D001935 ORTHO05D010109 6.8e-10 67.4 61 50.8
AUR62024666 Chenopodium quinoa HOM05D001935 ORTHO05D010109 1.2e-09 66.6 61 50.8
Lj1g0023097 Lotus japonicus HOM05D001935 ORTHO05D010109 1.2e-09 66.6 62 48.4
Glyma.19G215700 Glycine max HOM05D001935 ORTHO05D010109 1.5e-09 66.2 87 40.2
Sed0011579 Sechium edule HOM05D001935 ORTHO05D010109 2.0e-09 65.9 76 44.7
TPR.G4060 Trifolium pratense HOM05D001935 ORTHO05D010109 4.4e-09 64.7 64 45.3
Medtr7g109420 Medicago truncatula HOM05D001935 ORTHO05D010109 7.6e-09 63.9 91 35.2
VMungo1383G2590 Vigna mungo HOM05D001935 ORTHO05D010109 9.9e-09 63.5 63 46.0
AUR62024667 Chenopodium quinoa HOM05D001935 ORTHO05D010109 2.2e-08 62.4 61 57.4
Eucgr.H01053 Eucalyptus grandis HOM05D001935 ORTHO05D010109 2.2e-08 62.4 74 41.9
SGA_v2.0_scaffold376G50276 Striga asiatica HOM05D001935 ORTHO05D010109 2.2e-08 62.4 76 44.7
ATR0706G209 Amborella trichopoda HOM05D001935 ORTHO05D010109 4.9e-08 61.2 58 50.0
Ah.02g112210 Amaranthus hybridus HOM05D001935 ORTHO05D010109 4.2e-07 58.2 60 46.7
Os05g0552800 Oryza sativa ssp. japonica HOM05D001935 ORTHO05D001700 5.4e-07 57.8 76 40.8
Zm00001eb156470 Zea mays HOM05D001935 ORTHO05D001700 5.4e-07 57.8 78 42.3
Zm00001eb439660 Zea mays HOM05D001935 ORTHO05D001700 5.4e-07 57.8 78 42.3
Zm00001eb440490 Zea mays HOM05D001935 ORTHO05D001700 5.4e-07 57.8 78 42.3
GSVIVG01008464001 Vitis vinifera HOM05D007478 ORTHO05D001700 3.5e-06 55.1 77 39.0
DCAR_005768 Daucus carota HOM05D001935 ORTHO05D010109 4.6e-06 54.7 38 60.5
Peaxi162Scf00119g00143 Petunia axillaris HOM05D001935 ORTHO05D001700 4.6e-06 54.7 78 38.5
unitig_0.g277 Utricularia gibba HOM05D001935 ORTHO05D010109 4.6e-06 54.7 76 43.4
Nitab4.5_0000414g0010 Nicotiana tabacum HOM05D001935 ORTHO05D001700 7.8e-06 53.9 78 38.5
Nitab4.5_0001648g0030 Nicotiana tabacum HOM05D001935 ORTHO05D001700 7.8e-06 53.9 78 38.5


User provided reference genes

Program Settings