Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv11883 Davidia involucrata HOM05D006596 ORTHO05D008497 2.1e-138 496.5 321 100.0
Hma1.2p1_0969F.1_g242592 Hydrangea macrophylla HOM05D006596 ORTHO05D008497 1.5e-51 208.0 650 28.8
Dinv11886 Davidia involucrata HOM05D006596 ORTHO05D008497 2.0e-48 197.6 97 99.0
Gohir.D11G332300 Gossypium hirsutum HOM05D006596 ORTHO05D008497 5.9e-40 169.5 114 70.2
Gorai.007G363200 Gossypium raimondii HOM05D006596 ORTHO05D008497 5.9e-40 169.5 114 70.2
RcHm_v2.0_Chr3g0476881 Rosa chinensis HOM05D006596 ORTHO05D008497 5.9e-40 169.5 115 67.8
Actinidia03863 Actinidia chinensis HOM05D006596 ORTHO05D008497 1.3e-39 168.3 115 69.6
Actinidia03971 Actinidia chinensis HOM05D006596 ORTHO05D008497 1.3e-39 168.3 115 69.6
FvH4_6g20810 Fragaria vesca HOM05D006596 ORTHO05D008497 1.1e-38 165.2 641 25.4
FAN14G5569 Fragaria x ananassa HOM05D006596 ORTHO05D008497 1.1e-38 165.2 641 25.4
Hma1.2p1_0969F.1_g242594 Hydrangea macrophylla HOM05D006596 ORTHO05D008497 1.5e-38 164.9 97 80.4
FAN02G0500 Fragaria x ananassa HOM05D006596 ORTHO05D008497 2.1e-37 161.0 641 29.0
FAN09G2534 Fragaria x ananassa HOM05D006596 ORTHO05D008497 2.0e-35 154.5 116 63.8
TAR636G1255 Trochodendron aralioides HOM05D006596 ORTHO05D008497 2.6e-35 154.1 96 78.1
Sp6g36450 Schrenkiella parvula HOM05D006596 ORTHO05D008497 1.7e-34 151.4 356 35.7
Thecc.05G108600 Theobroma cacao HOM05D006596 ORTHO05D008497 2.2e-34 151.0 97 75.3
C09p70390 Brassica napus HOM05D006596 ORTHO05D008497 1.4e-33 148.3 631 26.0
BraA10t45038Z Brassica rapa HOM05D006596 ORTHO05D008497 5.4e-33 146.4 338 36.7
Gohir.A11G315300 Gossypium hirsutum HOM05D006596 ORTHO05D008497 2.0e-32 144.4 96 71.9
Prupe.7G091000 Prunus persica HOM05D006596 ORTHO05D008497 4.5e-32 143.3 96 72.9
Solyc01g006850.1 Solanum lycopersicum HOM05D006596 ORTHO05D008497 4.5e-32 143.3 97 69.1
Sopen01g002840 Solanum pennellii HOM05D006596 ORTHO05D008497 4.5e-32 143.3 97 69.1
PGSC0003DMG400021371 Solanum tuberosum HOM05D006596 ORTHO05D008497 5.9e-32 142.9 97 69.1
MBI05_g00435_MAGBIO Magnolia biondii HOM05D006596 ORTHO05D008497 7.7e-32 142.5 111 58.6
Sed0007804 Sechium edule HOM05D006596 ORTHO05D008497 7.7e-32 142.5 97 67.0
Lj1P1058T24 Lonicera japonica HOM05D006596 ORTHO05D008497 1.0e-31 142.1 99 72.7
TWI74G0317 Tripterygium wilfordii HOM05D006596 ORTHO05D008497 1.0e-31 142.1 99 70.7
Migut.O00313 Erythranthe guttata HOM05D006596 ORTHO05D008497 1.7e-31 141.4 96 67.7
Manes.09G043000 Manihot esculenta HOM05D006596 ORTHO05D008497 2.9e-31 140.6 96 71.9
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 3.8e-31 140.2 128 53.9
Ciclev10010964m.g Citrus clementina HOM05D006596 ORTHO05D008497 5.0e-31 139.8 97 69.1
Potri.006G200800 Populus trichocarpa HOM05D006596 ORTHO05D008497 5.0e-31 139.8 97 69.1
PSO339G5577 Papaver somniferum HOM05D006596 ORTHO05D008497 6.5e-31 139.4 95 71.6
Haze_20109 Corylus avellana HOM05D006596 ORTHO05D008497 8.5e-31 139.0 99 69.7
Cfa020083 Carpinus fangiana HOM05D006596 ORTHO05D008497 1.9e-30 137.9 99 67.7
CANSAT64G0970 Cannabis sativa HOM05D006596 ORTHO05D008497 3.2e-30 137.1 97 66.0
Migut.C00365 Erythranthe guttata HOM05D006596 ORTHO05D008497 7.2e-30 136.0 114 52.6
DCAR_016913 Daucus carota HOM05D006596 ORTHO05D008497 2.1e-29 134.4 97 67.0
PSO384G2212 Papaver somniferum HOM05D006596 ORTHO05D008497 2.1e-29 134.4 95 68.4
SalBow1G1508 Salvia bowleyana HOM05D006596 ORTHO05D008497 2.7e-29 134.0 95 65.3
Cc06_g06860 Coffea canephora HOM05D006596 ORTHO05D008497 6.1e-29 132.9 97 67.0
ATR0697G239 Amborella trichopoda HOM05D006596 ORTHO05D008497 1.0e-28 132.1 114 53.5
CAN.G911.26 Capsicum annuum HOM05D006596 ORTHO05D008497 1.0e-28 132.1 98 67.3
Nn4g26016 Nelumbo nucifera HOM05D006596 ORTHO05D008497 1.4e-28 131.7 94 68.1
CsaV3_3G038200 Cucumis sativus L. HOM05D006596 ORTHO05D008497 1.8e-28 131.3 98 66.3
Glyma.02G192800 Glycine max HOM05D006596 ORTHO05D008497 1.8e-28 131.3 95 63.2
Psat6g128160 Pisum sativum HOM05D006596 ORTHO05D008497 2.3e-28 131.0 115 53.9
Aqoxy1G00603 Aquilegia oxysepala HOM05D006596 ORTHO05D008497 4.0e-28 130.2 95 69.5
PSO339G1222 Papaver somniferum HOM05D006596 ORTHO05D008497 1.2e-27 128.6 132 54.5
Lj1g0010915 Lotus japonicus HOM05D006596 ORTHO05D008497 2.0e-27 127.9 96 63.5
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 4.4e-27 126.7 357 38.4
Eucgr.A02555 Eucalyptus grandis HOM05D006596 ORTHO05D008497 5.7e-27 126.3 96 63.5
Phvul.007G266200 Phaseolus vulgaris HOM05D006596 ORTHO05D008497 5.7e-27 126.3 97 59.8
TPR.G40248 Trifolium pratense HOM05D006596 ORTHO05D008497 9.8e-27 125.6 97 57.7
VMungo0720G1474 Vigna mungo HOM05D006596 ORTHO05D008497 9.8e-27 125.6 97 59.8
MD12G1044100 Malus domestica HOM05D006596 ORTHO05D008497 2.2e-26 124.4 95 66.3
Lj5g0008032 Lotus japonicus HOM05D006596 ORTHO05D008497 3.7e-26 123.6 96 62.5
Thhalv10012543m.g Eutrema salsugineum HOM05D006596 ORTHO05D008497 4.9e-26 123.2 97 58.8
Medtr1g055295 Medicago truncatula HOM05D006596 ORTHO05D008497 4.9e-26 123.2 94 57.4
Lalb_Chr02g0154271 Lupinus albus HOM05D006596 ORTHO05D008497 6.3e-26 122.9 97 58.8
Sc09g0001040 Simmondsia chinensis HOM05D006596 ORTHO05D008497 6.3e-26 122.9 95 61.1
Ca_11668_v3 Cicer arietinum L. HOM05D006596 ORTHO05D008497 1.8e-25 121.3 89 61.8
Rhsim03G0062300 Rhododendron simsii HOM05D006596 ORTHO05D008497 2.4e-25 120.9 90 65.6
CiPaw.09G023000 Carya illinoinensis HOM05D006596 ORTHO05D008497 4.1e-25 120.2 97 59.8
COL.COLO4_29516 Corchorus olitorius HOM05D006596 ORTHO05D008497 4.1e-25 120.2 96 60.4
Ah.06g194670 Amaranthus hybridus HOM05D006596 ORTHO05D008497 2.0e-24 117.9 94 60.6
QL07p026858 Quercus lobata HOM05D006596 ORTHO05D008497 3.5e-24 117.1 97 58.8
HanXRQChr14g0453291 Helianthus annuus HOM05D006596 ORTHO05D008497 5.9e-24 116.3 98 56.1
EL10Ac4g10108 Beta vulgaris HOM05D006596 ORTHO05D008497 1.0e-23 115.5 96 61.5
AUR62006552 Chenopodium quinoa HOM05D006179 ORTHO05D008370 1.3e-23 115.2 94 60.6
BolC9t59785H Brassica oleracea HOM05D006596 ORTHO05D008497 2.3e-23 114.4 338 33.4
ECA238G2420 Erigeron canadensis HOM05D006596 ORTHO05D008497 4.3e-22 110.2 98 54.1
CSS0017956 Camellia sinensis var. sinensis HOM05D006596 ORTHO05D008497 2.1e-21 107.8 97 57.7
Aa31sc52G230 Aethionema arabicum HOM05D006596 ORTHO05D008497 2.8e-21 107.5 97 50.5
Carub.0006s0529 Capsella rubella HOM05D006596 ORTHO05D008497 2.8e-21 107.5 75 61.3
Duzib093G1929 Durio zibethinus HOM05D006596 ORTHO05D008497 8.0e-21 105.9 66 74.2
CARHR207160 Cardamine hirsuta HOM05D006596 ORTHO05D008497 1.4e-20 105.1 97 51.5
PGR004G2850 Punica granatum HOM05D006596 ORTHO05D008497 1.4e-20 105.1 96 50.0
CDE07G1133 Ceratophyllum demersum HOM05D006596 ORTHO05D008497 4.0e-20 103.6 91 57.1
MSTRG.989 Avicennia marina HOM05D006596 ORTHO05D008497 6.8e-20 102.8 160 41.2
AL6G16490 Arabidopsis lyrata HOM05D006596 ORTHO05D008497 3.4e-19 100.5 97 49.5
HPP92_016090 Vanilla planifolia HOM05D006596 ORTHO05D008497 7.5e-19 99.4 131 40.5
Sabra06G0154500 Salix brachista HOM05D006596 ORTHO05D008497 9.8e-19 99.0 184 35.9
A10p29980 Brassica napus HOM05D006596 ORTHO05D008497 1.3e-18 98.6 78 55.1
AT5G06400 Arabidopsis thaliana HOM05D006596 ORTHO05D008497 1.7e-18 98.2 75 58.7
Os12g0456100 Oryza sativa ssp. japonica HOM05D006596 ORTHO05D008497 2.9e-18 97.4 115 43.5
Peaxi162Scf00675g00062 Petunia axillaris HOM05D006596 ORTHO05D008497 6.4e-18 96.3 135 41.5
Zm00001eb253100 Zea mays HOM05D006596 ORTHO05D008497 1.8e-17 94.7 116 44.8
Nitab4.5_0009788g0010 Nicotiana tabacum HOM05D006596 ORTHO05D008497 3.2e-17 94.0 137 40.1
Atru.chr1.1411 Acer truncatum HOM05D006596 ORTHO05D008497 1.2e-16 92.0 64 62.5
Cpa.g.sc222.25 Carica papaya HOM05D006596 ORTHO05D008497 1.3e-15 88.6 60 68.3
BcaC09g50571 Brassica carinata HOM05D006596 ORTHO05D008497 3.3e-14 84.0 80 45.0
Oeu063088.1 Olea europaea HOM05D006596 ORTHO05D008497 1.6e-13 81.6 46 80.4
Cpa.g.sc104.1 Carica papaya HOM05D006596 ORTHO05D008497 2.8e-13 80.9 59 67.8
THA.LOC104816628 Tarenaya hassleriana HOM05D006596 ORTHO05D008497 4.9e-10 70.1 96 39.6
TPR.G39620 Trifolium pratense HOM05D006596 ORTHO05D008497 6.4e-10 69.7 203 43.3
Dinv24080 Davidia involucrata HOM05D006596 ORTHO05D008497 3.5e-08 63.9 44 75.0
FvH4_2g37970 Fragaria vesca HOM05D000424 ORTHO05D000355 1.0e-07 62.4 106 31.1
FAN20G0922 Fragaria x ananassa HOM05D000424 ORTHO05D000355 1.0e-07 62.4 106 31.1
Prupe.1G359600 Prunus persica HOM05D000424 ORTHO05D000355 1.3e-07 62.0 106 31.1
Glyma.10G083901 Glycine max HOM05D006596 ORTHO05D008497 1.7e-07 61.6 51 49.0
FAN27G1492 Fragaria x ananassa HOM05D000424 ORTHO05D000355 2.3e-07 61.2 106 30.2
FAN15G0476 Fragaria x ananassa HOM05D000424 ORTHO05D000355 3.9e-07 60.5 106 29.2
ATR0684G115 Amborella trichopoda HOM05D006596 ORTHO05D008497 5.0e-07 60.1 71 45.1
RcHm_v2.0_Chr6g0303651 Rosa chinensis HOM05D000424 ORTHO05D000355 5.0e-07 60.1 106 30.2
Actinidia29766 Actinidia chinensis HOM05D000424 ORTHO05D000355 6.6e-07 59.7 106 31.1
CSS0033496 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 6.6e-07 59.7 106 33.0
Aqoxy6G01988 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 1.9e-06 58.2 109 27.5
ECA238G3774 Erigeron canadensis HOM05D000424 ORTHO05D000355 1.9e-06 58.2 99 32.3
ClCG05G015430 Citrullus lanatus HOM05D000424 ORTHO05D000355 3.3e-06 57.4 106 29.2
AagrBONN_evm.TU.Sc2ySwM_344.803 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.3e-06 57.0 102 23.5
Nn1g07956 Nelumbo nucifera HOM05D000424 ORTHO05D000355 5.6e-06 56.6 106 29.2
Aa31LG7G4660 Aethionema arabicum HOM05D000424 ORTHO05D000355 7.3e-06 56.2 106 32.1
CDE06G0674 Ceratophyllum demersum HOM05D000424 ORTHO05D000355 7.3e-06 56.2 105 28.6
Gohir.D03G065000 Gossypium hirsutum HOM05D000001 ORTHO05D009667 7.3e-06 56.2 106 27.4
Gorai.002G057400 Gossypium raimondii HOM05D000001 ORTHO05D009667 7.3e-06 56.2 106 27.4
Lsat_1_v5_gn_2_6800 Lactuca sativa HOM05D000424 ORTHO05D000355 7.3e-06 56.2 106 30.2
Gohir.A02G124200 Gossypium hirsutum HOM05D000001 ORTHO05D009667 9.5e-06 55.8 106 27.4
Lj4C17T15 Lonicera japonica HOM05D000424 ORTHO05D000355 9.5e-06 55.8 109 29.4
Potri.003G058700 Populus trichocarpa HOM05D000001 ORTHO05D009667 9.5e-06 55.8 100 26.0


User provided reference genes

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