Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 1.3e-260 902.5 446 100.0
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 5.7e-208 727.6 442 80.5
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.1e-206 721.8 448 79.0
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 1.0e-204 716.8 442 78.7
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.2e-204 715.7 448 79.0
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 2.2e-204 715.7 447 77.9
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 6.5e-204 714.1 443 79.5
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 1.5e-200 703.0 446 77.4
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 9.7e-200 700.3 446 76.9
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 1.3e-199 699.9 445 77.8
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 2.2e-199 699.1 442 76.2
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 2.0e-197 692.6 443 76.3
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 2.0e-197 692.6 446 76.9
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 2.6e-197 692.2 444 75.5
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 2.9e-196 688.7 448 75.0
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 2.5e-195 685.6 442 75.3
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 1.2e-194 683.3 445 74.4
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 6.1e-194 681.0 446 74.2
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 3.9e-193 678.3 453 74.8
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 5.1e-193 677.9 445 74.4
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 6.7e-193 677.6 448 76.1
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 8.8e-193 677.2 441 74.6
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 4.4e-192 674.9 441 75.5
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 9.7e-192 673.7 444 72.7
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 4.8e-191 671.4 444 73.0
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 4.8e-191 671.4 447 73.2
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 5.3e-190 667.9 442 74.0
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 1.5e-189 666.4 448 73.9
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 2.2e-188 662.5 447 73.2
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 8.5e-188 660.6 447 72.5
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 8.5e-188 660.6 446 72.0
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 8.5e-188 660.6 442 73.3
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 3.2e-187 658.7 447 72.0
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 5.5e-187 657.9 447 72.5
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 7.2e-187 657.5 447 71.6
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.6e-186 656.4 440 74.3
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 3.0e-185 652.1 447 72.3
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 3.9e-185 651.7 447 72.3
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 2.6e-184 649.0 447 70.7
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 3.3e-184 648.7 440 73.6
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 5.7e-184 647.9 449 72.2
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 7.4e-184 647.5 442 72.4
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 7.4e-184 647.5 433 70.7
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 1.3e-183 646.7 447 71.1
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 3.7e-183 645.2 442 72.2
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 6.3e-183 644.4 448 71.2
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 4.1e-182 641.7 446 70.2
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 4.1e-182 641.7 448 71.4
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 7.0e-182 641.0 401 77.8
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 1.6e-181 639.8 432 71.8
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 5.5e-179 631.3 441 71.2
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 5.5e-179 631.3 434 69.8
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 7.2e-179 630.9 417 76.0
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 1.2e-178 630.2 441 71.2
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 1.2e-178 630.2 435 71.0
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 1.2e-178 630.2 430 69.3
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 3.6e-178 628.6 445 70.3
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 8.0e-178 627.5 433 70.0
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 3.0e-177 625.5 433 68.8
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 5.2e-177 624.8 412 72.8
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 1.2e-176 623.6 432 70.6
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 7.5e-176 620.9 430 70.0
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 7.5e-176 620.9 437 68.6
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 4.8e-175 618.2 427 69.8
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 1.1e-174 617.1 434 69.6
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 9.1e-174 614.0 447 67.1
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 9.1e-174 614.0 447 67.1
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 1.5e-171 606.7 437 69.6
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 1.5e-171 606.7 450 66.9
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 3.2e-171 605.5 436 67.9
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 3.2e-171 605.5 416 71.4
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 4.2e-171 605.1 443 66.4
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 2.7e-170 602.4 412 70.1
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.4e-169 600.1 438 71.2
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.4e-169 600.1 438 71.2
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 4.4e-168 595.1 437 68.2
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 4.8e-167 591.7 469 65.0
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 7.0e-166 587.8 439 66.1
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 9.1e-166 587.4 442 67.6
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 5.9e-165 584.7 438 68.9
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 5.9e-165 584.7 444 67.3
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 1.0e-164 583.9 442 67.9
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 2.9e-164 582.4 460 65.7
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 8.6e-164 580.9 440 66.8
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 1.6e-162 576.6 435 67.4
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 6.1e-162 574.7 448 66.7
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 1.4e-161 573.5 450 65.8
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 6.8e-161 571.2 431 66.4
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 1.2e-160 570.5 446 66.4
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 4.9e-159 565.1 450 65.3
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 4.9e-159 565.1 349 77.9
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 4.9e-159 565.1 437 63.6
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 1.1e-158 563.9 449 65.3
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 1.4e-158 563.5 448 65.4
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.4e-158 563.5 447 64.9
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 5.4e-158 561.6 445 65.6
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 5.4e-158 561.6 456 63.6
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 2.7e-157 559.3 450 64.9
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.0e-156 557.4 447 64.2
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 5.0e-156 555.1 447 64.9
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 6.6e-156 554.7 374 71.7
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 3.3e-155 552.4 385 71.7
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 1.6e-154 550.1 446 64.1
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 2.1e-154 549.7 431 62.4
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 2.8e-154 549.3 447 64.7
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 2.8e-154 549.3 447 64.7
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 6.1e-154 548.1 431 63.3
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 2.3e-153 546.2 446 64.1
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 4.0e-153 545.4 444 64.6
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 4.4e-152 542.0 439 59.9
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 9.8e-152 540.8 446 63.9
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 2.2e-151 539.7 446 63.2
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 5.4e-150 535.0 439 59.7
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 9.2e-150 534.3 438 60.0
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 1.2e-149 533.9 443 63.4
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 3.5e-149 532.3 379 69.4
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 3.5e-149 532.3 350 74.0
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 1.5e-147 526.9 350 71.7
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 3.1e-145 519.2 347 70.6
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 2.9e-143 512.7 415 60.0
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 1.1e-142 510.8 368 69.3
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 1.1e-142 510.8 443 62.5
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 2.7e-141 506.1 357 68.9
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 3.4e-136 489.2 319 73.0
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 1.6e-130 470.3 446 57.2
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 3.0e-124 449.5 330 67.3
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 6.9e-121 438.3 363 62.8
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 3.3e-115 419.5 383 58.5
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 1.9e-110 403.7 326 64.1
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 1.9e-110 403.7 326 64.1
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 2.8e-98 363.2 386 50.0
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 6.9e-97 358.6 438 46.1
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 1.2e-88 331.3 239 66.9
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 3.7e-74 283.1 250 59.2
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.7e-71 274.2 399 43.4
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 1.7e-71 274.2 190 71.1
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 6.7e-68 262.3 167 75.4
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 4.7e-61 239.6 159 69.8
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 2.9e-55 220.3 262 48.9
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 2.4e-41 174.1 151 58.9
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 2.9e-39 167.2 107 71.0
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 2.9e-34 150.6 138 61.6
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 7.0e-33 146.0 109 70.6
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 6.0e-32 142.9 110 69.1
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 9.8e-27 125.6 99 57.6
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 8.6e-15 85.9 52 73.1
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 9.3e-09 65.9 67 50.7


User provided reference genes

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