Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 7.1e-124 447.2 213 100.0
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 2.4e-111 405.6 213 89.2
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 4.0e-111 404.8 213 89.2
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 4.0e-111 404.8 213 88.7
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 4.0e-111 404.8 210 88.6
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 5.2e-111 404.4 213 89.2
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 8.9e-111 403.7 213 88.7
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 1.2e-110 403.3 213 89.7
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 2.6e-110 402.1 213 88.7
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 2.6e-110 402.1 213 89.2
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 3.4e-110 401.7 213 89.2
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 1.3e-109 399.8 213 88.3
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 1.3e-109 399.8 204 90.7
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 1.7e-109 399.4 213 86.9
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 2.2e-109 399.1 213 87.8
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 3.8e-109 398.3 213 87.8
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 1.1e-108 396.7 212 85.8
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 2.4e-108 395.6 208 88.5
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 7.1e-108 394.0 209 86.1
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 2.7e-107 392.1 213 87.3
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 2.7e-107 392.1 214 85.0
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 7.8e-107 390.6 198 91.9
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 1.7e-106 389.4 208 88.5
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 2.3e-106 389.0 213 83.6
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 8.7e-106 387.1 210 83.8
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 1.1e-105 386.7 213 84.0
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 1.5e-105 386.3 209 84.7
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 1.9e-105 386.0 213 83.6
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 3.3e-105 385.2 211 83.9
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 5.6e-105 384.4 213 82.6
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 5.6e-105 384.4 213 83.6
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 7.3e-105 384.0 213 83.6
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 7.3e-105 384.0 210 82.9
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 9.6e-105 383.6 213 85.4
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 9.6e-105 383.6 213 82.6
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 1.3e-104 383.3 208 85.6
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 1.6e-104 382.9 213 82.6
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 2.1e-104 382.5 213 83.1
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 2.1e-104 382.5 208 84.1
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 2.1e-104 382.5 213 85.0
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 2.1e-104 382.5 213 83.6
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 2.8e-104 382.1 211 84.4
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 4.8e-104 381.3 209 84.2
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 1.4e-103 379.8 209 84.2
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 1.8e-103 379.4 209 82.8
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 1.8e-103 379.4 209 82.8
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 2.4e-103 379.0 213 82.2
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 2.4e-103 379.0 208 84.1
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 5.3e-103 377.9 213 81.7
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 5.3e-103 377.9 211 82.9
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 6.9e-103 377.5 213 84.0
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 6.9e-103 377.5 209 81.8
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 9.0e-103 377.1 208 83.7
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 1.2e-102 376.7 208 82.7
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 2.0e-102 375.9 209 81.8
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 2.6e-102 375.6 213 83.6
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 4.4e-102 374.8 213 83.6
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 5.8e-102 374.4 209 81.8
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 2.9e-101 372.1 213 82.6
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 8.4e-101 370.5 208 80.8
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 8.4e-101 370.5 213 81.2
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 8.4e-101 370.5 209 80.9
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 1.1e-100 370.2 208 82.2
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 1.1e-100 370.2 208 82.2
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 1.4e-100 369.8 234 76.1
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 1.9e-100 369.4 208 82.2
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 1.9e-100 369.4 213 80.8
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 2.4e-100 369.0 213 80.8
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 4.2e-100 368.2 208 80.3
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 9.3e-100 367.1 208 80.3
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 9.3e-100 367.1 209 81.3
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 1.2e-99 366.7 193 88.1
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 1.2e-99 366.7 204 82.4
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 1.6e-99 366.3 211 81.0
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 3.5e-99 365.2 213 80.3
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 3.5e-99 365.2 213 80.3
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 6.0e-99 364.4 208 81.2
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.0e-98 363.6 213 79.8
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 1.3e-98 363.2 209 78.9
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 1.7e-98 362.8 213 77.5
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 2.3e-98 362.5 207 80.2
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 5.1e-98 361.3 253 71.5
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 5.1e-98 361.3 213 79.3
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 2.5e-97 359.0 217 79.3
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 4.3e-97 358.2 208 78.4
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 5.6e-97 357.8 233 73.0
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 7.3e-97 357.5 206 78.6
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 9.6e-97 357.1 206 78.6
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 9.6e-97 357.1 208 79.8
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 1.3e-96 356.7 213 79.3
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 1.6e-96 356.3 206 77.7
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 4.8e-96 354.8 205 78.5
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 4.8e-96 354.8 213 78.4
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 6.2e-96 354.4 208 78.8
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 6.2e-96 354.4 217 74.7
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 1.8e-95 352.8 206 77.2
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 2.4e-95 352.4 210 76.2
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 2.4e-95 352.4 208 78.4
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 3.1e-95 352.1 208 77.9
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 3.1e-95 352.1 213 75.1
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 4.0e-95 351.7 208 77.9
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 5.3e-95 351.3 213 77.0
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 2.0e-94 349.4 210 75.7
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 2.6e-94 349.0 210 75.7
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 3.4e-94 348.6 210 75.7
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 4.5e-94 348.2 211 76.8
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 2.4e-92 342.4 209 75.1
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 4.2e-92 341.7 295 59.0
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 1.2e-91 340.1 202 76.7
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 3.5e-91 338.6 166 94.6
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 4.6e-91 338.2 202 76.7
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 7.9e-91 337.4 209 72.7
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 3.0e-90 335.5 202 75.2
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 3.0e-90 335.5 209 73.7
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 8.7e-90 334.0 201 75.1
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 9.6e-89 330.5 212 74.5
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 4.8e-88 328.2 178 86.0
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.5e-86 323.2 214 73.4
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 6.5e-85 317.8 173 85.5
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 3.8e-77 292.0 429 43.1
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 4.1e-71 271.9 145 85.5
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 5.3e-71 271.6 204 67.6
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 1.5e-70 270.0 145 84.1
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 2.5e-68 262.7 171 73.7
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 6.1e-67 258.1 145 78.6
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 5.7e-57 224.9 113 90.3
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 1.3e-56 223.8 141 72.3
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 7.0e-47 191.4 125 72.8
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 1.2e-46 190.7 189 48.1
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 2.0e-46 189.9 200 50.0
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 1.0e-45 187.6 109 81.7
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 2.0e-41 173.3 88 87.5
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 8.3e-40 167.9 195 44.1
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 1.8e-39 166.8 97 80.4
Dinv02216 Davidia involucrata HOM05D005215 ORTHO05D006382 3.8e-37 159.1 74 97.3
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 4.7e-35 152.1 143 53.1
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 9.8e-33 144.4 79 84.8
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 1.3e-32 144.1 99 69.7
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 1.1e-23 114.4 69 73.9
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 1.0e-21 107.8 74 66.2
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 5.0e-21 105.5 61 82.0
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 3.6e-19 99.4 66 69.7
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 4.7e-19 99.0 59 76.3
Migut.F00867 Erythranthe guttata HOM05D012249 ORTHO05D014194 6.2e-11 72.0 35 91.4
Peaxi162Scf00959g00416 Petunia axillaris HOM05D005215 ORTHO05D006382 8.1e-11 71.6 40 87.5
GSVIVG01037606001 Vitis vinifera HOM05D005215 ORTHO05D014194 1.8e-10 70.5 35 85.7
Peaxi162Scf00959g00417 Petunia axillaris HOM05D005215 ORTHO05D306904 1.3e-08 64.3 59 57.6
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 1.3e-08 64.3 32 87.5


User provided reference genes

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