Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 3.3e-189 664.8 329 100.0
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 8.3e-156 553.9 329 81.2
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 3.8e-153 545.0 326 82.2
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 1.2e-151 540.0 326 81.3
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.6e-151 539.7 331 81.6
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 6.1e-151 537.7 329 81.2
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 5.2e-150 534.6 322 79.5
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 3.4e-149 531.9 326 79.8
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 4.4e-149 531.6 326 81.3
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 2.8e-148 528.9 326 81.0
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 4.9e-148 528.1 324 80.6
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 8.3e-148 527.3 328 80.5
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 7.8e-146 520.8 328 79.0
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 1.3e-145 520.0 324 78.4
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 2.9e-145 518.8 323 78.0
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 3.8e-145 518.5 325 78.2
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 6.6e-145 517.7 326 77.9
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 1.9e-144 516.2 326 76.7
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 2.5e-144 515.8 328 79.3
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 3.3e-144 515.4 328 77.1
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 7.3e-144 514.2 334 78.4
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 1.6e-143 513.1 324 77.8
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 2.8e-143 512.3 324 77.5
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 3.0e-142 508.8 328 75.3
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 3.0e-142 508.8 328 75.6
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 5.2e-142 508.1 326 74.2
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 3.4e-141 505.4 322 77.0
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 5.7e-141 504.6 326 74.2
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 7.5e-141 504.2 324 77.8
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 7.5e-141 504.2 326 75.5
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 9.8e-141 503.8 325 74.8
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 1.3e-140 503.4 324 77.2
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.3e-140 503.4 328 75.6
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 1.7e-140 503.1 321 77.3
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 1.7e-140 503.1 326 75.5
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 2.9e-140 502.3 324 75.6
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 2.9e-140 502.3 323 75.9
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 2.9e-140 502.3 329 75.4
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.9e-140 502.3 329 75.4
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 3.7e-140 501.9 323 74.3
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 6.4e-140 501.1 321 76.9
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 8.3e-140 500.7 324 75.3
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 1.4e-139 500.0 327 75.5
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 1.8e-139 499.6 320 75.6
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.4e-139 499.2 329 74.8
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 2.4e-139 499.2 328 75.3
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 3.2e-139 498.8 324 75.6
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 5.4e-139 498.0 326 74.5
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 7.0e-139 497.7 329 74.8
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.2e-138 496.9 323 74.0
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 3.5e-138 495.4 324 76.2
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 4.6e-138 495.0 324 75.3
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 4.6e-138 495.0 324 75.3
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 1.0e-137 493.8 323 75.2
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.7e-137 493.0 325 72.9
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 1.7e-137 493.0 324 75.3
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 2.3e-137 492.7 326 75.8
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.9e-137 491.9 323 73.4
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 6.6e-137 491.1 321 73.8
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 6.6e-137 491.1 324 74.7
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 1.5e-136 490.0 322 75.2
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 1.9e-136 489.6 333 73.0
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 1.1e-134 483.8 324 72.8
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 1.1e-134 483.8 327 70.9
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 2.3e-134 482.6 324 73.5
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 8.9e-134 480.7 371 66.8
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 2.0e-133 479.6 325 71.7
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 2.6e-133 479.2 324 72.8
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 3.4e-133 478.8 321 70.7
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 4.4e-133 478.4 325 70.8
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 4.4e-133 478.4 322 70.5
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 4.4e-133 478.4 324 71.9
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 2.9e-132 475.7 324 72.8
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 4.9e-132 474.9 261 89.3
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 3.2e-131 472.2 326 72.1
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 2.0e-130 469.5 321 72.0
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.7e-130 469.2 323 70.3
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 4.6e-130 468.4 323 70.3
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 1.0e-129 467.2 325 68.9
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 1.0e-129 467.2 325 68.3
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 1.7e-129 466.5 325 68.0
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 3.9e-129 465.3 325 68.9
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 5.0e-129 464.9 325 69.2
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 1.1e-128 463.8 323 68.1
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 1.1e-128 463.8 324 71.9
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 1.1e-128 463.8 279 81.4
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 3.3e-128 462.2 318 71.1
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 4.3e-128 461.8 325 68.0
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 7.3e-128 461.1 325 69.2
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 9.5e-128 460.7 323 67.5
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.1e-127 459.5 323 68.4
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 2.8e-127 459.1 325 66.8
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 3.6e-127 458.8 307 73.3
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 6.8e-126 454.5 325 67.1
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 1.5e-125 453.4 420 60.2
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 2.0e-125 453.0 324 69.8
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 2.0e-125 453.0 329 68.7
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 2.6e-125 452.6 309 71.2
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 2.2e-124 449.5 324 66.4
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 6.4e-124 448.0 324 66.4
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 3.2e-123 445.7 324 68.8
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 4.1e-123 445.3 324 66.0
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 2.7e-122 442.6 325 65.8
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 1.0e-121 440.7 266 83.8
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.9e-120 436.4 305 69.5
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.8e-118 429.9 378 60.8
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 2.0e-117 426.4 322 67.1
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 2.9e-116 422.5 294 70.1
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 1.2e-114 417.2 323 63.8
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 1.3e-113 413.7 323 61.3
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 3.0e-113 412.5 544 44.1
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 1.1e-112 410.6 324 62.0
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 7.3e-112 407.9 290 69.7
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.6e-109 399.4 324 64.2
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 4.2e-107 392.1 324 62.7
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.1e-106 389.8 323 61.3
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 2.5e-104 382.9 685 37.8
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 5.8e-101 371.7 327 60.6
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 9.9e-101 370.9 289 65.1
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 6.2e-95 351.7 282 63.8
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 5.8e-93 345.1 235 71.1
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 1.7e-92 343.6 222 75.2
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 1.2e-90 337.4 265 63.4
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 5.6e-88 328.6 263 64.3
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 8.2e-87 324.7 307 53.1
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 1.1e-86 324.3 315 50.8
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 5.8e-85 318.5 315 49.2
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.0e-84 317.8 202 79.2
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 1.0e-81 307.8 177 84.2
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 1.6e-79 300.4 308 49.7
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 3.7e-71 272.7 221 61.5
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 1.8e-54 217.2 304 37.8
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 4.8e-47 192.6 198 46.0
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 1.8e-46 190.7 96 96.9
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 6.6e-36 155.6 99 74.7
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 6.8e-33 145.6 75 86.7
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 3.4e-32 143.3 86 83.7
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 7.5e-32 142.1 99 70.7
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 7.0e-30 135.6 95 68.4
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.0e-29 134.0 95 68.4
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 8.6e-28 128.6 119 58.8
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 8.0e-26 122.1 330 28.2
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 2.9e-23 113.6 88 64.8
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 3.3e-19 100.1 83 57.8
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 1.7e-15 87.8 63 65.1
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 7.8e-13 79.0 54 74.1
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 7.8e-13 79.0 54 74.1
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 1.0e-12 78.6 54 74.1
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 2.1e-10 70.9 56 60.7
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 2.8e-10 70.5 62 61.3
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.8e-10 70.5 43 76.7
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 1.9e-06 57.8 70 44.3


User provided reference genes

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