Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 3.7e-252 874.4 443 100.0
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 4.3e-224 781.2 443 88.7
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 2.4e-219 765.4 443 87.1
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 1.0e-217 760.0 443 86.2
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 8.7e-217 756.9 444 86.9
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 2.2e-212 742.3 431 86.8
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 1.1e-211 740.0 443 84.4
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 2.1e-210 735.7 443 83.3
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 3.5e-210 734.9 437 84.2
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 3.9e-209 731.5 443 83.3
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 3.9e-209 731.5 441 84.1
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 3.9e-209 731.5 444 83.1
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 1.3e-207 726.5 443 83.5
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 8.1e-207 723.8 445 82.9
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 3.1e-206 721.8 444 83.1
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 2.0e-205 719.2 437 83.1
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 2.6e-205 718.8 445 81.8
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 3.4e-205 718.4 432 83.8
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 3.4e-205 718.4 445 81.6
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 7.6e-205 717.2 443 81.7
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 7.6e-205 717.2 440 83.0
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 9.9e-205 716.8 439 82.2
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 3.8e-204 714.9 443 81.5
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 6.4e-204 714.1 443 81.7
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 1.4e-203 713.0 442 81.7
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 1.9e-203 712.6 445 82.0
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 7.1e-203 710.7 442 80.5
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 9.3e-203 710.3 440 81.4
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 9.3e-203 710.3 444 81.5
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 1.2e-202 709.9 442 80.5
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 1.6e-202 709.5 428 83.9
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 4.6e-202 708.0 433 82.4
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 4.6e-202 708.0 558 68.1
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 1.0e-201 706.8 436 81.2
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 1.8e-201 706.1 443 80.8
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 2.3e-201 705.7 439 82.0
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 2.3e-201 705.7 431 81.9
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 3.9e-201 704.9 439 80.6
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 3.9e-201 704.9 441 81.0
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.1e-201 704.5 442 80.5
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 5.1e-201 704.5 433 82.2
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 6.7e-201 704.1 432 82.6
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.1e-200 703.4 442 79.0
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 1.5e-200 703.0 520 71.7
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 2.5e-200 702.2 431 82.8
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 3.3e-200 701.8 440 80.0
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 4.3e-200 701.4 460 78.3
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 5.6e-200 701.0 443 79.9
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 5.6e-200 701.0 440 81.1
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 7.4e-200 700.7 444 81.1
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 7.4e-200 700.7 431 81.7
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 9.6e-200 700.3 440 80.9
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 9.6e-200 700.3 473 77.2
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.3e-199 699.9 442 79.9
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 4.8e-199 698.0 442 78.5
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 4.8e-199 698.0 442 78.5
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 8.1e-199 697.2 439 81.3
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 1.8e-198 696.0 442 79.2
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 2.4e-198 695.7 451 78.9
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 2.4e-198 695.7 437 81.2
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 3.1e-198 695.3 445 79.3
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 1.2e-197 693.3 432 82.2
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 1.2e-197 693.3 430 80.9
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 1.5e-197 693.0 430 80.5
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 1.5e-197 693.0 430 80.5
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 1.5e-197 693.0 430 80.5
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 2.0e-197 692.6 430 80.2
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 2.0e-197 692.6 430 80.2
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 2.0e-197 692.6 444 78.6
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 2.0e-197 692.6 444 78.6
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 2.6e-197 692.2 432 80.3
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 3.4e-197 691.8 414 82.1
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 3.4e-197 691.8 440 79.8
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 7.6e-197 690.6 430 80.9
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 9.9e-197 690.3 430 80.9
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 1.3e-196 689.9 430 80.2
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 1.3e-196 689.9 447 79.0
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 1.7e-196 689.5 430 80.7
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 2.2e-196 689.1 431 80.3
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 2.2e-196 689.1 430 80.2
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 2.9e-196 688.7 430 80.7
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 3.8e-196 688.3 432 79.6
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 3.8e-196 688.3 430 80.7
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 4.9e-196 688.0 430 80.7
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 8.4e-196 687.2 439 79.5
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 1.1e-195 686.8 416 81.7
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 1.4e-195 686.4 440 79.3
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 1.4e-195 686.4 430 81.6
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 1.4e-195 686.4 430 81.6
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 3.2e-195 685.3 416 81.5
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 4.2e-195 684.9 426 79.8
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 4.2e-195 684.9 407 83.3
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 1.2e-194 683.3 436 78.7
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 1.6e-194 682.9 431 80.3
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 2.1e-194 682.6 443 79.0
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.5e-194 681.8 429 80.9
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 7.9e-194 680.6 491 72.9
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.3e-193 679.9 441 79.1
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 8.7e-193 677.2 441 79.1
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 8.7e-193 677.2 432 80.8
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 1.5e-192 676.4 432 78.2
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 1.5e-192 676.4 431 80.3
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.9e-192 676.0 429 80.2
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 7.4e-192 674.1 429 79.3
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 7.4e-192 674.1 440 78.9
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 4.8e-191 671.4 444 76.8
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 8.2e-191 670.6 438 76.9
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 1.8e-190 669.5 436 77.5
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 2.4e-190 669.1 436 77.5
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 3.1e-190 668.7 440 77.7
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 9.0e-190 667.2 443 76.5
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 1.5e-189 666.4 431 77.0
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.0e-189 666.0 444 75.9
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 1.0e-188 663.7 431 77.0
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 1.3e-188 663.3 438 76.3
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 8.4e-188 660.6 438 76.0
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 3.2e-187 658.7 432 77.5
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.3e-185 653.3 480 72.3
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 1.3e-183 646.7 446 74.7
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.3e-183 646.7 441 76.6
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 6.9e-182 641.0 383 81.7
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 1.5e-181 639.8 410 78.0
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 2.0e-181 639.4 387 81.9
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 2.6e-181 639.0 384 82.0
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 7.9e-178 627.5 441 73.9
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 7.4e-176 620.9 399 79.2
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 1.3e-175 620.2 380 81.1
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 1.7e-175 619.8 393 77.6
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 2.8e-175 619.0 412 76.0
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 8.2e-175 617.5 393 76.3
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.3e-174 614.8 444 71.6
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.2e-173 613.6 395 77.5
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 8.8e-169 597.4 349 88.3
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 1.5e-168 596.7 372 79.8
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 1.7e-164 583.2 353 84.7
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 5.5e-163 578.2 350 82.9
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 1.8e-161 573.2 364 79.7
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 5.2e-161 571.6 340 83.8
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 7.4e-160 567.8 364 79.1
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 8.2e-159 564.3 428 68.9
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 8.8e-153 544.3 346 75.4
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 5.0e-148 528.5 440 64.8
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 2.7e-146 522.7 353 74.5
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 2.0e-144 516.5 348 75.0
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 7.5e-144 514.6 370 69.2
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 1.3e-143 513.8 376 68.4
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 4.5e-141 505.4 365 71.0
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 1.6e-130 470.3 261 87.4
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 1.2e-125 454.1 331 68.0
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 6.8e-121 438.3 264 81.1
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 1.5e-120 437.2 269 82.2
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 3.9e-116 422.5 381 59.8
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 1.2e-104 384.4 233 83.7
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 8.1e-98 361.7 233 77.7
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 4.9e-95 352.4 247 73.3
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 3.1e-89 333.2 188 88.8
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 3.3e-83 313.2 193 80.3
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 4.8e-82 309.3 364 46.4
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 1.8e-81 307.4 354 50.3
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 1.1e-70 271.6 155 80.6
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 2.1e-69 267.3 187 70.6
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 2.1e-69 267.3 187 70.6
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 7.2e-62 242.3 146 81.5
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 1.8e-60 237.7 220 62.7
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 5.3e-57 226.1 244 55.7
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 4.8e-42 176.4 159 61.6
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 4.5e-40 169.9 99 82.8
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.1e-33 148.7 220 47.7
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.9e-30 137.9 297 38.0
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 4.9e-26 123.2 84 73.8
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 1.3e-23 115.2 60 95.0
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 4.0e-20 103.6 82 67.1
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 2.2e-18 97.8 59 83.1
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 2.2e-18 97.8 59 83.1
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 1.8e-17 94.7 79 63.3
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.6e-16 90.1 90 53.3
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 5.0e-15 86.7 46 87.0
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 2.5e-14 84.3 47 89.4
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 2.5e-14 84.3 49 81.6
Actinidia38274 Actinidia chinensis HOM05D003701 ORTHO05D012924 1.2e-11 75.5 44 79.5
C02p38530 Brassica napus HOM05D003701 ORTHO05D101262 4.1e-09 67.0 74 48.6
CBR_g74262 Chara braunii HOM05D003701 ORTHO05D004771 9.2e-09 65.9 43 76.7
BolC2t09870H Brassica oleracea HOM05D003701 ORTHO05D041413 1.2e-08 65.5 74 50.0
MBI09_g06128_MAGBIO Magnolia biondii HOM05D018637 ORTHO05D012924 1.2e-08 65.5 46 65.2
Rhsim05G0028600 Rhododendron simsii HOM05D000745 ORTHO05D000641 1.6e-08 65.1 136 37.5
C05p40290 Brassica napus HOM05D003701 ORTHO05D041413 1.0e-07 62.4 74 48.6


User provided reference genes

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