Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv11652 Davidia involucrata HOM05D000183 ORTHO05D000100 2.8e-70 268.5 134 100.0
Potri.002G176300 Populus trichocarpa HOM05D000183 ORTHO05D000100 7.6e-15 84.3 50 82.0
Potri.014G103000 Populus trichocarpa HOM05D000183 ORTHO05D000100 9.9e-15 84.0 50 82.0
Thecc.01G336300 Theobroma cacao HOM05D000183 ORTHO05D000100 1.3e-14 83.6 50 82.0
FvH4_7g17320 Fragaria vesca HOM05D000183 ORTHO05D000100 1.7e-14 83.2 49 83.7
FAN01G3052 Fragaria x ananassa HOM05D000183 ORTHO05D000100 1.7e-14 83.2 49 83.7
Prupe.2G194400 Prunus persica HOM05D000183 ORTHO05D000100 1.7e-14 83.2 50 82.0
FAN10G0493 Fragaria x ananassa HOM05D000183 ORTHO05D000100 2.2e-14 82.8 49 83.7
Gohir.A07G135300 Gossypium hirsutum HOM05D000183 ORTHO05D000100 3.7e-14 82.0 50 82.0
Gohir.D07G140200 Gossypium hirsutum HOM05D000183 ORTHO05D000100 3.7e-14 82.0 50 82.0
Gorai.001G152200 Gossypium raimondii HOM05D000183 ORTHO05D000100 3.7e-14 82.0 50 82.0
Cfa003757 Carpinus fangiana HOM05D000183 ORTHO05D000100 6.4e-14 81.3 50 78.0
ClCG05G000530 Citrullus lanatus HOM05D000183 ORTHO05D000100 6.4e-14 81.3 50 78.0
Duzib133G0094 Durio zibethinus HOM05D000183 ORTHO05D000100 6.4e-14 81.3 50 80.0
FAN06G2596 Fragaria x ananassa HOM05D000183 ORTHO05D000100 6.4e-14 81.3 49 81.6
Manes.01G242300 Manihot esculenta HOM05D000183 ORTHO05D000100 6.4e-14 81.3 50 80.0
Sabra14G0075800 Salix brachista HOM05D000183 ORTHO05D000100 6.4e-14 81.3 48 83.3
GSVIVG01027407001 Vitis vinifera HOM05D000183 ORTHO05D000100 8.4e-14 80.9 50 78.0
FAN06G4893 Fragaria x ananassa HOM05D000183 ORTHO05D000100 1.1e-13 80.5 49 81.6
FAN10G1020 Fragaria x ananassa HOM05D000183 ORTHO05D000100 1.4e-13 80.1 49 81.6
Glyma.16G021000 Glycine max HOM05D000183 ORTHO05D000100 1.4e-13 80.1 50 78.0
Ciclev10021877m.g Citrus clementina HOM05D000183 ORTHO05D000100 1.9e-13 79.7 50 78.0
FAN03G1073 Fragaria x ananassa HOM05D000183 ORTHO05D000100 1.9e-13 79.7 49 79.6
Hma1.2p1_0180F.1_g079830 Hydrangea macrophylla HOM05D000183 ORTHO05D000100 1.9e-13 79.7 51 74.5
MD07G1156200 Malus domestica HOM05D000183 ORTHO05D000100 1.9e-13 79.7 78 51.3
QL08p046520 Quercus lobata HOM05D000183 ORTHO05D000100 1.9e-13 79.7 50 78.0
Sed0009692 Sechium edule HOM05D000183 ORTHO05D000100 1.9e-13 79.7 50 76.0
VMungo0331G0936 Vigna mungo HOM05D000183 ORTHO05D000100 1.9e-13 79.7 50 78.0
Duzib138G1536 Durio zibethinus HOM05D000183 ORTHO05D000100 2.4e-13 79.3 50 78.0
Gohir.D11G104100 Gossypium hirsutum HOM05D000183 ORTHO05D000100 4.1e-13 78.6 50 74.0
Gorai.007G111400 Gossypium raimondii HOM05D000183 ORTHO05D000100 4.1e-13 78.6 50 74.0
MD00G1036300 Malus domestica HOM05D000183 ORTHO05D000100 4.1e-13 78.6 51 74.5
Phvul.010G117200 Phaseolus vulgaris HOM05D000183 ORTHO05D000100 4.1e-13 78.6 50 76.0
TAR375G0348 Trochodendron aralioides HOM05D000183 ORTHO05D000100 4.1e-13 78.6 50 76.0
CiPaw.01G079900 Carya illinoinensis HOM05D000183 ORTHO05D000100 5.4e-13 78.2 50 74.0
Glyma.07G052100 Glycine max HOM05D000183 ORTHO05D000100 7.1e-13 77.8 50 76.0
TWI23G0962 Tripterygium wilfordii HOM05D000183 ORTHO05D000100 7.1e-13 77.8 50 74.0
Sc01g0002350 Simmondsia chinensis HOM05D000183 ORTHO05D000100 2.1e-12 76.3 50 74.0
Aqoxy7G00019 Aquilegia oxysepala HOM05D000183 ORTHO05D000100 2.7e-12 75.9 71 57.7
Haze_15708 Corylus avellana HOM05D000183 ORTHO05D000100 2.7e-12 75.9 50 72.0
Lj7A498T43 Lonicera japonica HOM05D000183 ORTHO05D000100 2.7e-12 75.9 50 74.0
Oeu023236.1 Olea europaea HOM05D000183 ORTHO05D000100 2.7e-12 75.9 49 73.5
RcHm_v2.0_Chr1g0360751 Rosa chinensis HOM05D000183 ORTHO05D000100 2.7e-12 75.9 48 79.2
TWI14G0860 Tripterygium wilfordii HOM05D000183 ORTHO05D000100 2.7e-12 75.9 50 74.0
Lalb_Chr10g0100771 Lupinus albus HOM05D000183 ORTHO05D000100 4.6e-12 75.1 50 70.0
Eucgr.D02645 Eucalyptus grandis HOM05D000183 ORTHO05D000100 7.8e-12 74.3 50 72.0
CANSAT56G3792 Cannabis sativa HOM05D000183 ORTHO05D000100 1.0e-11 73.9 54 70.4
Cpa.g.sc144.7 Carica papaya HOM05D000183 ORTHO05D000100 1.3e-11 73.6 51 66.7
TWI59G1191 Tripterygium wilfordii HOM05D000183 ORTHO05D000100 1.3e-11 73.6 46 76.1
Lj9A602T29 Lonicera japonica HOM05D000183 ORTHO05D000100 1.7e-11 73.2 50 72.0
BcaC07g40679 Brassica carinata HOM05D000183 ORTHO05D000100 3.9e-11 72.0 48 68.8
C08p36760 Brassica napus HOM05D000183 ORTHO05D000100 3.9e-11 72.0 48 68.8
BolC8t51256H Brassica oleracea HOM05D000183 ORTHO05D000100 3.9e-11 72.0 48 68.8
PSO135G0302 Papaver somniferum HOM05D000183 ORTHO05D000100 3.9e-11 72.0 50 70.0
PSO384G5147 Papaver somniferum HOM05D000183 ORTHO05D000100 3.9e-11 72.0 50 70.0
Hund27163 Selenicereus undatus HOM05D000183 ORTHO05D000100 5.1e-11 71.6 49 69.4
DCAR_002986 Daucus carota HOM05D000183 ORTHO05D000100 6.6e-11 71.2 50 68.0
Gohir.D08G114600 Gossypium hirsutum HOM05D000183 ORTHO05D000100 6.6e-11 71.2 63 57.1
Gorai.004G123500 Gossypium raimondii HOM05D000183 ORTHO05D000100 6.6e-11 71.2 63 57.1
Hma1.2p1_0094F.1_g047200 Hydrangea macrophylla HOM05D000183 ORTHO05D000100 6.6e-11 71.2 54 64.8
COL.COLO4_14344 Corchorus olitorius HOM05D000183 ORTHO05D000100 1.1e-10 70.5 59 55.9
Hund16738 Selenicereus undatus HOM05D000183 ORTHO05D000100 1.5e-10 70.1 48 68.8
Actinidia13058 Actinidia chinensis HOM05D000183 ORTHO05D000100 1.9e-10 69.7 54 61.1
FAN01G2203 Fragaria x ananassa HOM05D000183 ORTHO05D000100 1.9e-10 69.7 50 64.0
FAN03G2240 Fragaria x ananassa HOM05D000183 ORTHO05D000100 1.9e-10 69.7 50 64.0
FAN10G0951 Fragaria x ananassa HOM05D000183 ORTHO05D000100 1.9e-10 69.7 50 64.0
FAN10G4074 Fragaria x ananassa HOM05D000183 ORTHO05D000100 1.9e-10 69.7 50 64.0
Oeu042954.1 Olea europaea HOM05D000183 ORTHO05D000100 1.9e-10 69.7 49 71.4
RcHm_v2.0_Chr1g0382431 Rosa chinensis HOM05D000183 ORTHO05D000100 1.9e-10 69.7 50 64.0
Thecc.03G206000 Theobroma cacao HOM05D000183 ORTHO05D000100 1.9e-10 69.7 56 58.9
MD01G1226600 Malus domestica HOM05D000183 ORTHO05D000100 2.5e-10 69.3 70 54.3
Actinidia06126 Actinidia chinensis HOM05D000183 ORTHO05D000100 3.3e-10 68.9 54 61.1
Sc23g0001920 Simmondsia chinensis HOM05D000183 ORTHO05D000100 4.3e-10 68.6 50 66.0
Prupe.2G316600 Prunus persica HOM05D000183 ORTHO05D000100 5.6e-10 68.2 50 62.0
Solyc01g096320.3 Solanum lycopersicum HOM05D000183 ORTHO05D000100 5.6e-10 68.2 49 69.4
MBI04_g25310_MAGBIO Magnolia biondii HOM05D000183 ORTHO05D000100 7.3e-10 67.8 62 58.1
Actinidia18677 Actinidia chinensis HOM05D000183 ORTHO05D000100 9.6e-10 67.4 54 59.3
BcaC02g12655 Brassica carinata HOM05D000183 ORTHO05D000100 9.6e-10 67.4 51 64.7
Manes.05G018700 Manihot esculenta HOM05D000183 ORTHO05D000100 9.6e-10 67.4 50 66.0
BcaB06g29482 Brassica carinata HOM05D000183 ORTHO05D000100 1.2e-09 67.0 48 66.7
Dinv35370 Davidia involucrata HOM05D000183 ORTHO05D000100 1.2e-09 67.0 50 64.0
MD07G1297100 Malus domestica HOM05D000183 ORTHO05D000100 1.2e-09 67.0 70 52.9
DCAR_020355 Daucus carota HOM05D000183 ORTHO05D000100 1.6e-09 66.6 76 48.7
PGR031G0802 Punica granatum HOM05D000183 ORTHO05D000100 1.6e-09 66.6 49 65.3
A04p34560 Brassica napus HOM05D000183 ORTHO05D000100 2.1e-09 66.2 50 62.0
BraA04t18913Z Brassica rapa HOM05D000183 ORTHO05D000100 2.1e-09 66.2 50 62.0
Carub.0005s2864 Capsella rubella HOM05D000183 ORTHO05D000100 2.1e-09 66.2 47 63.8
Potri.001G083700 Populus trichocarpa HOM05D000183 ORTHO05D000100 2.1e-09 66.2 54 59.3
Sabra01G0060600 Salix brachista HOM05D000183 ORTHO05D000100 2.1e-09 66.2 54 57.4
Sp4g28720 Schrenkiella parvula HOM05D000183 ORTHO05D000100 2.1e-09 66.2 48 64.6
SGA_v2.0_scaffold18G08456 Striga asiatica HOM05D000183 ORTHO05D000100 2.1e-09 66.2 50 62.0
SGA_v2.0_scaffold98G29433 Striga asiatica HOM05D000183 ORTHO05D000100 2.1e-09 66.2 48 62.5
BcaC02g07013 Brassica carinata HOM05D000183 ORTHO05D000100 2.8e-09 65.9 48 64.6
C04p72320 Brassica napus HOM05D000183 ORTHO05D000100 2.8e-09 65.9 48 64.6
Manes.01G038900 Manihot esculenta HOM05D000183 ORTHO05D000100 3.6e-09 65.5 50 62.0
ECA236G3776 Erigeron canadensis HOM05D000183 ORTHO05D000100 6.2e-09 64.7 50 58.0
Gohir.A08G102700 Gossypium hirsutum HOM05D000183 ORTHO05D000100 1.1e-08 63.9 50 60.0
Lalb_Chr04g0254291 Lupinus albus HOM05D000183 ORTHO05D000100 1.1e-08 63.9 50 60.0
vmacro10151 Vaccinium macrocarpon HOM05D000183 ORTHO05D000100 1.4e-08 63.5 54 55.6
Sc01g0010730 Simmondsia chinensis HOM05D000183 ORTHO05D000100 1.8e-08 63.2 49 65.3
BolC4t28720H Brassica oleracea HOM05D000183 ORTHO05D000100 2.4e-08 62.8 48 62.5
COL.COLO4_06263 Corchorus olitorius HOM05D000183 ORTHO05D000100 2.4e-08 62.8 50 64.0
Haze_09178 Corylus avellana HOM05D000183 ORTHO05D000100 2.4e-08 62.8 61 52.5
Sed0002248 Sechium edule HOM05D000183 ORTHO05D000100 3.1e-08 62.4 49 63.3
ATR0620G080 Amborella trichopoda HOM05D000183 ORTHO05D000100 4.0e-08 62.0 46 63.0
EL10Ac5g12426 Beta vulgaris HOM05D000183 ORTHO05D000100 5.2e-08 61.6 71 49.3
Oeu013380.1 Olea europaea HOM05D000183 ORTHO05D000100 5.2e-08 61.6 68 50.0
SalBow5G0067 Salvia bowleyana HOM05D000183 ORTHO05D000100 5.2e-08 61.6 46 60.9
AUR62007058 Chenopodium quinoa HOM05D000393 ORTHO05D000100 6.8e-08 61.2 49 63.3
MSTRG.13713 Avicennia marina HOM05D000183 ORTHO05D000100 8.9e-08 60.8 50 58.0
Phvul.006G116000 Phaseolus vulgaris HOM05D000183 ORTHO05D000100 8.9e-08 60.8 48 58.3
GSVIVG01019655001 Vitis vinifera HOM05D000183 ORTHO05D000100 8.9e-08 60.8 48 60.4
Dinv12931 Davidia involucrata HOM05D000183 ORTHO05D000100 1.2e-07 60.5 49 59.2
AUR62019921 Chenopodium quinoa HOM05D000393 ORTHO05D000100 1.5e-07 60.1 49 63.3
Cc02_g01010 Coffea canephora HOM05D000183 ORTHO05D000100 1.5e-07 60.1 50 56.0
MBI12_g05173_MAGBIO Magnolia biondii HOM05D000183 ORTHO05D000100 1.5e-07 60.1 50 58.0
SGA_v2.0_scaffold5G03052 Striga asiatica HOM05D000183 ORTHO05D000100 2.0e-07 59.7 43 62.8
Cc08_g16780 Coffea canephora HOM05D000183 ORTHO05D000100 3.4e-07 58.9 51 54.9
Gohir.A08G102900 Gossypium hirsutum HOM05D000183 ORTHO05D000100 3.4e-07 58.9 63 49.2
Nitab4.5_0000319g0290 Nicotiana tabacum HOM05D000183 ORTHO05D000100 4.4e-07 58.5 48 56.2
Nitab4.5_0007028g0030 Nicotiana tabacum HOM05D000183 ORTHO05D000100 5.8e-07 58.2 48 56.2
Os09g0528200 Oryza sativa ssp. japonica HOM05D000183 ORTHO05D000100 5.8e-07 58.2 50 54.0
Nn6g35737 Nelumbo nucifera HOM05D000183 ORTHO05D000100 7.6e-07 57.8 43 62.8
HanXRQChr04g0100411 Helianthus annuus HOM05D000183 ORTHO05D000100 9.9e-07 57.4 49 55.1
Lj3g0007087 Lotus japonicus HOM05D000183 ORTHO05D000100 9.9e-07 57.4 50 58.0
Oeu061017.1 Olea europaea HOM05D000183 ORTHO05D000100 1.7e-06 56.6 43 60.5
SalBow5G4179 Salvia bowleyana HOM05D000183 ORTHO05D000100 1.7e-06 56.6 47 53.2
SalBow5G4478 Salvia bowleyana HOM05D000183 ORTHO05D000100 1.7e-06 56.6 47 53.2
vmacro13850 Vaccinium macrocarpon HOM05D000183 ORTHO05D000100 1.7e-06 56.6 75 44.0
CiPaw.12G077000 Carya illinoinensis HOM05D000183 ORTHO05D000100 2.2e-06 56.2 54 51.9
Sed0006893 Sechium edule HOM05D000183 ORTHO05D000100 2.2e-06 56.2 50 56.0
Zm00001eb103330 Zea mays HOM05D000183 ORTHO05D000100 2.2e-06 56.2 50 52.0
Ah.12g053240 Amaranthus hybridus HOM05D000183 ORTHO05D000100 2.9e-06 55.8 49 55.1
Gohir.A11G016200 Gossypium hirsutum HOM05D000183 ORTHO05D000100 2.9e-06 55.8 50 52.0
Gohir.D11G016000 Gossypium hirsutum HOM05D000183 ORTHO05D000100 2.9e-06 55.8 50 52.0
SalBow5G2742 Salvia bowleyana HOM05D000183 ORTHO05D000100 2.9e-06 55.8 47 53.2
MSTRG.2022 Avicennia marina HOM05D000183 ORTHO05D000100 3.8e-06 55.5 49 57.1
AUR62006027 Chenopodium quinoa HOM05D000183 ORTHO05D000100 4.9e-06 55.1 83 39.8
Gorai.007G016800 Gossypium raimondii HOM05D000183 ORTHO05D000100 4.9e-06 55.1 69 40.6
HanXRQChr04g0120121 Helianthus annuus HOM05D000183 ORTHO05D000100 4.9e-06 55.1 48 50.0
ClCG07G009850 Citrullus lanatus HOM05D000183 ORTHO05D000100 6.4e-06 54.7 50 50.0
Phvul.006G013200 Phaseolus vulgaris HOM05D000183 ORTHO05D000100 6.4e-06 54.7 48 43.8
Solyc08g083130.4 Solanum lycopersicum HOM05D000183 ORTHO05D000100 6.4e-06 54.7 50 56.0
Sopen08g031350 Solanum pennellii HOM05D000183 ORTHO05D000100 6.4e-06 54.7 50 56.0
VMungo0540G0386 Vigna mungo HOM05D000183 ORTHO05D000100 6.4e-06 54.7 42 59.5
MSTRG.17372 Avicennia marina HOM05D000183 ORTHO05D000100 8.4e-06 54.3 50 56.0
CsaV3_4G008480 Cucumis sativus L. HOM05D000183 ORTHO05D000100 8.4e-06 54.3 71 45.1
DCAR_016533 Daucus carota HOM05D000183 ORTHO05D000100 8.4e-06 54.3 48 54.2
Hund09369 Selenicereus undatus HOM05D000183 ORTHO05D000100 8.4e-06 54.3 71 40.8


User provided reference genes

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