Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 6.6e-168 594.0 301 100.0
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 1.7e-155 552.7 300 91.7
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 3.5e-153 545.0 301 90.7
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 5.6e-151 537.7 300 90.0
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 1.6e-150 536.2 300 89.3
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 2.0e-148 529.3 300 89.0
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 2.6e-148 528.9 301 87.4
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 7.6e-148 527.3 301 86.7
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 9.9e-148 526.9 301 86.7
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 9.9e-148 526.9 300 88.0
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 2.2e-147 525.8 301 86.7
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 2.9e-147 525.4 317 84.2
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 3.8e-147 525.0 301 87.4
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 6.4e-147 524.2 301 86.4
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 1.9e-146 522.7 300 87.7
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 4.2e-146 521.5 301 86.4
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 5.4e-146 521.2 301 86.4
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.6e-145 519.6 301 86.0
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 1.6e-145 519.6 300 86.7
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 1.6e-145 519.6 300 86.0
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 2.3e-144 515.8 301 84.7
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 2.3e-144 515.8 301 84.4
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 1.1e-143 513.5 300 85.3
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 1.1e-143 513.5 300 86.7
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.5e-143 513.1 300 85.0
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 1.9e-143 512.7 300 84.3
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 2.5e-143 512.3 300 85.7
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 2.5e-143 512.3 300 85.0
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 2.5e-143 512.3 301 84.4
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 3.3e-143 511.9 300 84.7
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 5.6e-143 511.1 299 84.9
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 5.6e-143 511.1 300 85.7
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 7.3e-143 510.8 301 83.4
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 7.3e-143 510.8 301 83.4
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 7.3e-143 510.8 300 85.0
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 1.3e-142 510.0 300 84.7
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 1.6e-142 509.6 300 85.0
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 2.8e-142 508.8 300 84.0
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 6.2e-142 507.7 300 85.0
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 1.1e-141 506.9 300 83.7
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 1.1e-141 506.9 300 84.3
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 1.4e-141 506.5 300 84.3
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 2.4e-141 505.8 320 80.3
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 3.1e-141 505.4 300 84.0
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 4.0e-141 505.0 300 83.3
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 5.3e-141 504.6 300 83.0
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 5.3e-141 504.6 300 83.7
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 6.9e-141 504.2 300 82.3
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 9.0e-141 503.8 300 82.7
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 1.5e-140 503.1 300 83.3
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.5e-140 503.1 299 83.9
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 2.0e-140 502.7 300 82.0
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 2.0e-140 502.7 300 82.3
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.6e-140 502.3 299 83.3
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 4.5e-140 501.5 300 83.3
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 7.6e-140 500.7 300 82.0
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 9.9e-140 500.4 299 83.3
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 9.9e-140 500.4 300 82.0
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 9.9e-140 500.4 300 81.3
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.7e-139 499.6 297 83.8
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.7e-139 499.6 300 81.0
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 1.7e-139 499.6 300 81.7
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 2.9e-139 498.8 301 81.7
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 4.9e-139 498.0 300 82.7
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 4.9e-139 498.0 300 83.0
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 8.4e-139 497.3 301 81.4
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 1.9e-138 496.1 300 81.3
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 1.9e-138 496.1 300 82.3
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 2.4e-138 495.7 300 81.7
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 2.4e-138 495.7 301 82.1
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 9.3e-138 493.8 300 82.3
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 2.7e-137 492.3 301 81.7
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 3.5e-137 491.9 300 80.3
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 3.5e-137 491.9 300 82.0
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 3.5e-137 491.9 300 81.7
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 3.5e-137 491.9 301 82.7
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 1.3e-136 490.0 300 81.3
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 2.3e-136 489.2 302 81.1
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 3.9e-136 488.4 302 81.1
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 3.9e-136 488.4 303 79.9
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 3.3e-135 485.3 302 80.5
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 3.3e-135 485.3 302 80.8
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 3.3e-135 485.3 302 80.1
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 3.3e-135 485.3 302 80.5
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 4.3e-135 485.0 301 81.1
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 5.6e-135 484.6 303 80.2
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 5.6e-135 484.6 303 80.5
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 5.6e-135 484.6 303 80.5
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 5.6e-135 484.6 303 80.5
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 3.7e-134 481.9 302 79.8
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 8.1e-134 480.7 302 80.1
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 1.1e-133 480.3 299 78.9
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 1.1e-133 480.3 299 78.9
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 1.4e-133 479.9 304 79.9
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.4e-133 479.9 301 81.1
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 1.4e-133 479.9 301 80.1
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 4.0e-133 478.4 301 78.4
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 5.3e-133 478.0 300 76.7
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 5.3e-133 478.0 242 98.3
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 5.3e-133 478.0 299 80.9
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 1.5e-132 476.5 300 80.0
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 3.4e-132 475.3 302 79.8
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 4.9e-131 471.5 299 77.6
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 1.4e-130 469.9 302 78.8
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 1.9e-130 469.5 317 75.4
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 2.4e-130 469.2 304 76.6
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 2.4e-130 469.2 335 73.1
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 3.2e-130 468.8 304 76.3
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 7.1e-130 467.6 304 76.0
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 2.1e-129 466.1 300 75.3
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 2.7e-129 465.7 306 75.8
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 7.9e-129 464.2 302 76.5
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 3.9e-128 461.8 300 77.0
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 4.3e-127 458.4 340 70.0
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 1.0e-123 447.2 249 87.6
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 2.7e-121 439.1 260 83.1
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 7.4e-119 431.0 299 68.2
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 2.2e-118 429.5 309 72.8
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 2.8e-118 429.1 300 75.3
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 3.7e-118 428.7 293 71.0
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 4.1e-117 425.2 340 64.4
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 2.6e-116 422.5 300 73.0
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 1.4e-114 416.8 300 71.3
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 9.3e-114 414.1 289 70.6
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 4.6e-113 411.8 287 71.1
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 2.4e-109 399.4 508 47.8
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.0e-104 384.0 301 68.4
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 1.0e-104 384.0 297 64.6
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 1.5e-103 380.2 299 62.9
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 1.3e-99 367.1 209 86.1
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 3.8e-99 365.5 209 84.7
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 3.2e-98 362.5 290 60.3
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 4.1e-93 345.5 219 79.5
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 3.5e-92 342.4 199 86.4
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 5.7e-87 325.1 239 73.6
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 2.1e-81 306.6 242 68.2
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 1.3e-78 297.4 303 52.5
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 8.3e-78 294.7 246 58.9
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 3.0e-72 276.2 154 89.0
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 3.5e-52 209.5 281 41.3
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 1.8e-48 197.2 274 39.1
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 2.6e-47 193.4 166 57.8
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 7.5e-47 191.8 108 85.2
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 4.3e-42 176.0 101 86.1
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 3.6e-41 172.9 196 54.1
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 6.0e-36 155.6 84 85.7
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 3.1e-32 143.3 84 81.0
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 1.2e-23 114.8 70 81.4
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 5.8e-23 112.5 82 69.5
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 7.6e-23 112.1 234 29.1
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 8.4e-22 108.6 132 51.5
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 1.9e-21 107.5 63 77.8
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 5.4e-21 105.9 124 46.0
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.2e-20 104.8 162 39.5
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 6.0e-20 102.4 121 51.2
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 1.3e-19 101.3 86 65.1
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 3.7e-09 66.6 53 66.0
Lj9A668T37 Lonicera japonica HOM05D004556 ORTHO05D005298 1.4e-08 64.7 63 55.6
RcHm_v2.0_Chr7g0229041 Rosa chinensis HOM05D004556 ORTHO05D005298 2.4e-08 63.9 40 75.0
Sp1g08890 Schrenkiella parvula HOM05D000111 ORTHO05D013786 3.1e-08 63.5 63 57.1
AagrBONN_evm.TU.Sc2ySwM_362.2853 Anthoceros agrestis HOM05D003469 ORTHO05D004084 4.9e-06 56.2 89 32.6


User provided reference genes

Program Settings