Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 1.4e-84 316.2 158 100.0
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 5.6e-33 144.8 172 54.7
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 2.3e-31 139.4 137 56.9
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 4.0e-31 138.7 127 63.0
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 8.9e-31 137.5 137 54.7
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 1.2e-30 137.1 142 57.0
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 2.6e-30 136.0 127 64.6
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 2.2e-29 132.9 127 63.0
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 2.2e-29 132.9 135 51.9
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 2.2e-29 132.9 128 60.2
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 6.4e-29 131.3 133 58.6
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 6.4e-29 131.3 127 61.4
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 8.3e-29 131.0 142 55.6
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 1.1e-28 130.6 137 51.1
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 2.4e-28 129.4 120 60.0
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 2.4e-28 129.4 127 60.6
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 3.2e-28 129.0 135 48.9
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 4.1e-28 128.6 118 58.5
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 4.1e-28 128.6 121 57.9
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 7.0e-28 127.9 148 50.0
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 1.6e-27 126.7 140 54.3
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 2.0e-27 126.3 134 56.7
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 2.7e-27 125.9 131 54.2
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 1.7e-26 123.2 136 54.4
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 2.3e-26 122.9 118 55.1
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 3.0e-26 122.5 128 50.8
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 3.9e-26 122.1 128 53.1
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 3.9e-26 122.1 131 55.0
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 5.0e-26 121.7 125 53.6
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 5.0e-26 121.7 125 53.6
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 5.0e-26 121.7 141 49.6
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 5.0e-26 121.7 149 49.0
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 6.6e-26 121.3 126 54.8
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 6.6e-26 121.3 137 54.0
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 1.1e-25 120.6 116 55.2
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 1.5e-25 120.2 145 50.3
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 4.3e-25 118.6 121 52.1
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 4.3e-25 118.6 135 49.6
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 5.6e-25 118.2 138 50.0
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 7.3e-25 117.9 137 49.6
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 7.3e-25 117.9 139 48.2
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 7.3e-25 117.9 139 48.2
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 7.3e-25 117.9 147 46.9
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 9.5e-25 117.5 136 51.5
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.2e-24 117.1 157 45.9
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 1.6e-24 116.7 142 46.5
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 1.6e-24 116.7 122 56.6
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 1.6e-24 116.7 117 58.1
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 2.1e-24 116.3 140 49.3
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 6.2e-24 114.8 138 48.6
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 8.0e-24 114.4 123 52.8
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 1.0e-23 114.0 136 48.5
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 1.0e-23 114.0 121 55.4
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 1.4e-23 113.6 127 48.8
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 1.4e-23 113.6 123 52.8
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 1.4e-23 113.6 122 49.2
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 2.3e-23 112.8 132 47.0
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 2.3e-23 112.8 131 49.6
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 3.1e-23 112.5 114 58.8
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 3.1e-23 112.5 133 51.1
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 3.1e-23 112.5 152 46.7
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 3.1e-23 112.5 126 49.2
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 4.0e-23 112.1 131 47.3
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 4.0e-23 112.1 145 52.4
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 4.0e-23 112.1 152 46.7
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 5.2e-23 111.7 126 47.6
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 6.8e-23 111.3 125 52.8
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 1.5e-22 110.2 129 49.6
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 1.5e-22 110.2 121 51.2
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 2.0e-22 109.8 131 46.6
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 2.0e-22 109.8 139 46.0
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 2.0e-22 109.8 129 48.8
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.0e-22 109.8 152 46.1
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 2.6e-22 109.4 146 41.8
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 2.6e-22 109.4 129 50.4
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 2.6e-22 109.4 131 48.9
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 3.4e-22 109.0 139 43.2
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 4.4e-22 108.6 120 53.3
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 7.5e-22 107.8 116 53.4
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 9.8e-22 107.5 129 52.7
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 9.8e-22 107.5 115 49.6
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 1.3e-21 107.1 142 48.6
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 1.3e-21 107.1 130 48.5
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 1.7e-21 106.7 104 60.6
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 1.7e-21 106.7 110 54.5
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 3.7e-21 105.5 110 54.5
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 4.9e-21 105.1 110 54.5
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 4.9e-21 105.1 126 53.2
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 6.4e-21 104.8 118 47.5
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 6.4e-21 104.8 106 52.8
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 6.4e-21 104.8 128 51.6
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 6.4e-21 104.8 128 51.6
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 1.4e-20 103.6 111 52.3
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 1.4e-20 103.6 133 46.6
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 1.4e-20 103.6 139 47.5
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 1.4e-20 103.6 128 49.2
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 1.9e-20 103.2 118 49.2
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 4.1e-20 102.1 125 46.4
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 5.4e-20 101.7 107 52.3
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 7.0e-20 101.3 115 47.8
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 1.2e-19 100.5 118 47.5
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 2.0e-19 99.8 135 45.2
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 3.5e-19 99.0 118 46.6
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 3.5e-19 99.0 118 46.6
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 4.6e-19 98.6 118 45.8
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 7.8e-19 97.8 118 45.8
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 3.0e-18 95.9 118 44.9
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 3.0e-18 95.9 118 44.9
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 5.0e-18 95.1 121 47.9
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 6.6e-18 94.7 127 44.1
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 8.6e-18 94.4 118 44.9
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 1.1e-17 94.0 130 46.2
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 1.1e-17 94.0 127 44.9
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 2.5e-17 92.8 120 45.0
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 2.5e-17 92.8 120 45.0
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 2.5e-17 92.8 120 45.0
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 4.3e-17 92.0 128 45.3
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 7.3e-17 91.3 130 44.6
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 7.3e-17 91.3 117 41.0
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 2.1e-16 89.7 128 46.1
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 2.1e-16 89.7 128 46.1
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 2.1e-16 89.7 113 45.1
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 2.8e-16 89.4 117 43.6
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 3.6e-16 89.0 78 57.7
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 8.1e-16 87.8 128 41.4
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 1.1e-15 87.4 122 42.6
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 1.1e-15 87.4 117 42.7
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 8.9e-15 84.3 121 43.8
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 1.5e-14 83.6 117 41.9
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 4.4e-14 82.0 124 39.5
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 1.7e-13 80.1 117 41.9
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 7.1e-12 74.7 93 51.6
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 3.9e-10 68.9 111 40.5
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 8.6e-10 67.8 146 33.6
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 1.5e-09 67.0 66 53.0
SEGI_39402 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 1.9e-09 66.6 126 31.0
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 4.3e-09 65.5 58 56.9
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 9.5e-09 64.3 36 77.8
SEGI_10606 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 1.6e-08 63.5 116 36.2
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 4.0e-07 58.9 76 47.4
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 5.2e-07 58.5 76 46.1
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 5.2e-07 58.5 128 33.6
Lj1g0002957 Lotus japonicus HOM05D006278 ORTHO05D007526 6.8e-07 58.2 82 45.1
Zm00001eb418860 Zea mays HOM05D005336 ORTHO05D006511 8.9e-07 57.8 124 29.0
Migut.E00712 Erythranthe guttata HOM05D005336 ORTHO05D006511 1.5e-06 57.0 99 42.4
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 1.5e-06 57.0 129 34.1
Os04g0105200 Oryza sativa ssp. japonica HOM05D005336 ORTHO05D006511 1.5e-06 57.0 117 30.8
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 2.0e-06 56.6 154 30.5
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 2.6e-06 56.2 136 31.6
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 4.4e-06 55.5 86 44.2
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 5.8e-06 55.1 154 27.9
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 5.8e-06 55.1 85 37.6
Os01g0106600 Oryza sativa ssp. japonica HOM05D041344 ORTHO05D037183 7.6e-06 54.7 121 35.5
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 7.6e-06 54.7 136 28.7
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 9.9e-06 54.3 125 32.0


User provided reference genes

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