Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 0.0e+00 2261.9 1169 100.0
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 0.0e+00 1576.6 1214 70.8
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 0.0e+00 1537.3 1183 70.8
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 0.0e+00 1516.9 1200 67.3
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 0.0e+00 1500.0 1210 66.2
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 0.0e+00 1417.5 1202 63.9
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 0.0e+00 1399.4 1218 64.2
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 0.0e+00 1389.4 1199 62.3
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 0.0e+00 1370.9 1207 62.0
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 0.0e+00 1364.7 1208 61.0
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 0.0e+00 1361.7 1198 61.4
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 0.0e+00 1357.0 1201 60.7
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 0.0e+00 1346.3 1206 60.8
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 0.0e+00 1345.9 1207 61.2
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 0.0e+00 1343.2 1206 60.4
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 0.0e+00 1342.8 1217 59.6
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1332.0 1205 60.8
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1327.4 1207 60.7
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 0.0e+00 1323.5 1196 59.4
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 0.0e+00 1323.5 1145 63.2
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 0.0e+00 1305.8 1206 59.2
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1296.2 1207 59.7
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 0.0e+00 1288.1 1156 61.9
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 0.0e+00 1284.6 1139 60.2
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 0.0e+00 1268.4 1195 57.7
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 0.0e+00 1254.2 1216 56.6
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 0.0e+00 1249.6 1216 56.7
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 0.0e+00 1242.3 1192 58.1
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 0.0e+00 1234.6 1219 57.6
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 0.0e+00 1227.6 1200 57.0
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 0.0e+00 1223.8 1210 55.9
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 0.0e+00 1198.7 1201 55.5
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 0.0e+00 1192.9 1197 55.0
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 0.0e+00 1187.6 1149 57.3
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 0.0e+00 1162.5 1210 53.4
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 0.0e+00 1151.3 1340 50.1
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 0.0e+00 1151.0 1198 52.9
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 0.0e+00 1149.8 1208 54.1
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 0.0e+00 1148.7 1200 53.8
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 0.0e+00 1142.9 1205 53.2
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 0.0e+00 1135.2 1202 51.8
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 0.0e+00 1133.6 1196 52.8
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 0.0e+00 1132.5 1183 54.4
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 0.0e+00 1126.7 1207 53.2
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 0.0e+00 1125.2 1095 57.4
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 0.0e+00 1122.1 1095 57.5
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 0.0e+00 1119.4 1095 57.2
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 0.0e+00 1109.7 1196 52.6
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 0.0e+00 1104.0 1333 48.7
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 0.0e+00 1100.9 1208 51.8
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 0.0e+00 1077.8 1154 53.0
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 8.0e-312 1074.7 1340 47.5
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 8.0e-312 1074.3 1183 52.6
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 8.0e-312 1073.9 1092 54.9
Nitab4.5_0007502g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005735 4.8e-307 1058.1 1098 54.9
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 2.2e-304 1049.3 1109 52.7
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 2.5e-303 1045.8 1209 51.0
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 1.2e-302 1043.5 1204 50.8
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 4.6e-302 1041.6 1205 51.5
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 3.9e-301 1038.5 1207 51.2
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 2.8e-299 1032.3 1207 49.8
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 2.8e-299 1032.3 1207 49.8
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 3.7e-299 1031.9 1186 51.0
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 8.2e-299 1030.8 1155 51.8
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 1.1e-298 1030.4 866 63.5
Nitab4.5_0000491g0190 Nicotiana tabacum HOM05D000087 ORTHO05D005735 1.0e-296 1023.8 1099 54.7
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 2.1e-294 1016.1 1201 50.0
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 2.0e-292 1009.6 1205 49.6
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 7.7e-289 997.7 1224 47.0
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 2.6e-284 982.6 1039 52.2
vmacro08519 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 1.8e-282 976.5 908 62.1
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 5.9e-265 918.3 1230 46.1
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 3.6e-262 909.1 835 59.8
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 4.9e-259 898.7 1166 47.1
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 5.9e-257 891.7 1183 46.9
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 7.8e-241 838.2 1212 42.2
Hma1.2p1_0198F.1_g085370 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 1.9e-239 833.6 592 73.0
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 4.3e-239 832.4 1007 50.5
DCAR_010123 Daucus carota HOM05D000087 ORTHO05D005735 3.6e-230 802.7 850 52.7
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 5.2e-229 798.9 1432 37.6
Aqoxy5G04397 Aquilegia oxysepala HOM05D000087 ORTHO05D005735 1.3e-222 777.7 871 51.7
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 1.3e-198 698.0 945 45.3
Glyma.06G180700 Glycine max HOM05D000087 ORTHO05D005735 7.7e-188 662.1 674 53.3
Mapoly0043s0141 Marchantia polymorpha HOM05D000087 ORTHO05D005735 8.5e-179 632.1 1048 38.6
Atru.chr9.2610 Acer truncatum HOM05D000087 ORTHO05D005735 6.7e-176 622.5 508 65.7
Pp3c3_37190 Physcomitrium patens HOM05D000087 ORTHO05D005735 3.5e-164 583.6 1146 35.0
SMO367G1062 Selaginella moellendorffii HOM05D000087 ORTHO05D005735 1.4e-160 571.6 1212 34.9
MD14G1143100 Malus domestica HOM05D000087 ORTHO05D005735 1.8e-160 571.2 592 55.2
COL.COLO4_10863 Corchorus olitorius HOM05D000087 ORTHO05D005735 4.0e-160 570.1 1154 36.2
Cpa.g.sc37.117 Carica papaya HOM05D000087 ORTHO05D005735 2.2e-158 564.3 603 53.7
VMungo1127G0184 Vigna mungo HOM05D000087 ORTHO05D005735 2.1e-153 547.7 571 52.5
HPP92_028198 Vanilla planifolia HOM05D000087 ORTHO05D005735 7.5e-151 539.3 757 41.3
HPP92_008913 Vanilla planifolia HOM05D000087 ORTHO05D005735 1.0e-147 528.9 681 45.4
Oeu019648.1 Olea europaea HOM05D000087 ORTHO05D005735 3.8e-147 526.9 500 59.6
Ca_16291_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005735 2.4e-141 507.7 607 49.8
Glyma.06G181000 Glycine max HOM05D000087 ORTHO05D005735 1.9e-133 481.5 538 51.5
CARHR143600 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.6e-129 468.4 525 53.3
vmacro08520 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 3.7e-126 457.2 405 63.2
Os08g0152900 Oryza sativa ssp. japonica HOM05D000087 ORTHO05D005735 6.8e-120 436.4 586 43.7
Duzib084G1107 Durio zibethinus HOM05D000087 ORTHO05D005735 7.6e-95 353.2 441 49.7
MD14G1142900 Malus domestica HOM05D000087 ORTHO05D005735 3.5e-84 317.8 258 65.9
CBR_g3175 Chara braunii HOM05D000087 ORTHO05D005735 7.9e-84 316.6 784 31.8
SEGI_15816 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 8.4e-78 296.6 374 47.6
SalBow4G1355 Salvia bowleyana HOM05D000087 ORTHO05D005735 3.2e-77 294.7 368 45.1
CSS0029196 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 4.6e-68 264.2 175 80.0
Duzib084G0823 Durio zibethinus HOM05D000087 ORTHO05D005735 2.7e-60 238.4 168 71.4
AL8G10020 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 3.9e-59 234.6 254 51.6
Cpa.g.sc363.3 Carica papaya HOM05D000087 ORTHO05D005735 1.1e-58 233.0 170 71.8
MCO07G377 Micromonas commoda HOM05D000087 ORTHO05D005735 2.0e-58 232.3 923 26.5
CiPaw.11G106300 Carya illinoinensis HOM05D000087 ORTHO05D005735 4.4e-58 231.1 252 51.2
AUR62009162 Chenopodium quinoa HOM05D000087 ORTHO05D005735 2.2e-57 228.8 546 35.7
MD14G1142800 Malus domestica HOM05D000087 ORTHO05D005735 3.7e-57 228.0 240 52.1
SEGI_26992 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 9.1e-56 223.4 217 54.4
CSS0034403 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.2e-54 218.8 234 55.6
CSS0007327 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.5e-53 215.3 244 53.3
FAN13G3301 Fragaria x ananassa HOM05D000087 ORTHO05D005735 8.3e-41 173.7 134 65.7
CARHR293880 Cardamine hirsuta HOM05D000087 ORTHO05D005735 3.8e-38 164.9 123 68.3
HPP92_028197 Vanilla planifolia HOM05D000087 ORTHO05D005735 5.0e-38 164.5 176 53.4
CSS0025060 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.5e-29 135.6 121 62.0
Cre03.g166600 Chlamydomonas reinhardtii HOM05D000087 ORTHO05D005735 3.3e-29 135.2 1143 21.2
SEGI_26806 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 3.3e-29 135.2 246 34.6
Oeu053260.1 Olea europaea HOM05D000087 ORTHO05D010194 2.1e-28 132.5 123 62.6
Hma1.2p1_0198F.1_g085360 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 2.8e-28 132.1 90 72.2
CSS0050207 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.2e-26 126.7 90 70.0
MBI04_g04804_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 2.6e-26 125.6 99 63.6
VMungo1127G1440 Vigna mungo HOM05D000087 ORTHO05D005735 2.7e-23 115.5 160 46.2
Rhsim02G0255800 Rhododendron simsii HOM05D000087 ORTHO05D005735 1.7e-22 112.8 99 57.6
CARHR291390 Cardamine hirsuta HOM05D000087 ORTHO05D005735 5.0e-22 111.3 67 79.1
RcHm_v2.0_Chr7g0188121 Rosa chinensis HOM05D000087 ORTHO05D005735 5.6e-21 107.8 71 81.7
Duzib084G0615 Durio zibethinus HOM05D000087 ORTHO05D005735 8.9e-19 100.5 94 57.4
MBI17_g33112_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 8.9e-19 100.5 68 67.6
CARHR293870 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.7e-17 96.3 74 68.9
SEGI_26704 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.4e-16 93.2 97 47.4
VMungo1080G1218 Vigna mungo HOM05D000087 ORTHO05D005735 1.9e-16 92.8 97 49.5
CSS0033050 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.0e-15 89.4 77 61.0
VMungo0145G0001 Vigna mungo HOM05D000087 ORTHO05D005735 4.6e-15 88.2 97 47.4
MBI04_g07085_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.3e-14 86.7 91 50.5
CARHR046160 Cardamine hirsuta HOM05D000087 ORTHO05D005735 3.0e-14 85.5 61 68.9
MBI04_g39794_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 3.9e-14 85.1 91 50.5
MBI04_g04802_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.5e-13 83.2 65 70.8
Medtr3g080660 Medicago truncatula HOM05D000087 ORTHO05D005735 3.3e-13 82.0 105 41.9
CSS0034676 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 4.0e-11 75.1 91 50.5
SalBow1G5284 Salvia bowleyana HOM05D000087 ORTHO05D005735 5.2e-11 74.7 75 57.3
Ah.10g034360 Amaranthus hybridus HOM05D000087 ORTHO05D005735 1.1e-08 67.0 67 52.2
CARHR293850 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.4e-08 66.6 76 47.4
Nitab4.5_0000949g0050 Nicotiana tabacum HOM05D005235 ORTHO05D006938 1.9e-08 66.2 74 48.6
RcHm_v2.0_Chr7g0188101 Rosa chinensis HOM05D000087 ORTHO05D005735 1.9e-08 66.2 95 36.8
CARHR293860 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.2e-07 63.5 77 41.6
CARHR291380 Cardamine hirsuta HOM05D000087 ORTHO05D005735 3.5e-07 62.0 63 52.4
CSS0049190 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.7e-06 59.7 77 46.8
SalBow7G0393 Salvia bowleyana HOM05D022560 ORTHO05D005735 8.6e-06 57.4 65 52.3


User provided reference genes

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