Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv11379 Davidia involucrata HOM05D006353 ORTHO05D007993 1.5e-119 433.0 226 100.0
Dinv25324 Davidia involucrata HOM05D006353 ORTHO05D007993 1.2e-86 323.6 221 78.3
vmacro20360 Vaccinium macrocarpon HOM05D006353 ORTHO05D007993 9.0e-61 237.7 220 56.8
CSS0001064 Camellia sinensis var. sinensis HOM05D006353 ORTHO05D007993 4.9e-59 231.9 201 59.7
CSS0032329 Camellia sinensis var. sinensis HOM05D006353 ORTHO05D007993 4.9e-59 231.9 201 59.7
Actinidia11518 Actinidia chinensis HOM05D006353 ORTHO05D007993 6.5e-59 231.5 223 57.0
Rhsim05G0229500 Rhododendron simsii HOM05D006353 ORTHO05D007993 4.2e-58 228.8 220 55.5
Actinidia29043 Actinidia chinensis HOM05D006353 ORTHO05D007993 1.9e-50 203.4 175 61.1
GSVIVG01030203001 Vitis vinifera HOM05D006353 ORTHO05D007993 1.9e-50 203.4 235 48.5
Oeu026960.1 Olea europaea HOM05D006353 ORTHO05D007993 1.5e-47 193.7 204 53.4
THA.LOC104806639 Tarenaya hassleriana HOM05D006353 ORTHO05D007993 3.8e-43 179.1 238 43.3
BcaB02g09176 Brassica carinata HOM05D006353 ORTHO05D007993 5.0e-43 178.7 228 44.7
A05p07550 Brassica napus HOM05D006353 ORTHO05D007993 5.0e-43 178.7 228 44.7
BraA05t19722Z Brassica rapa HOM05D006353 ORTHO05D007993 5.0e-43 178.7 228 44.7
BcaC02g12001 Brassica carinata HOM05D006353 ORTHO05D007993 1.1e-42 177.6 228 44.3
C04p09030 Brassica napus HOM05D006353 ORTHO05D007993 1.1e-42 177.6 228 44.7
BolC4t22493H Brassica oleracea HOM05D006353 ORTHO05D007993 1.1e-42 177.6 228 44.7
Migut.J00057 Erythranthe guttata HOM05D006353 ORTHO05D007993 5.5e-42 175.3 203 47.3
Aa31LG5G23800 Aethionema arabicum HOM05D006353 ORTHO05D007993 5.1e-40 168.7 204 46.6
AL4G35790 Arabidopsis lyrata HOM05D006353 ORTHO05D007993 1.1e-39 167.5 232 43.1
EL10Ac7g17070 Beta vulgaris HOM05D006353 ORTHO05D007993 1.5e-39 167.2 216 48.6
QL07p032560 Quercus lobata HOM05D006353 ORTHO05D007993 1.5e-39 167.2 206 46.6
Carub.0004s2049 Capsella rubella HOM05D006353 ORTHO05D007993 2.0e-39 166.8 232 43.1
Thecc.04G154100 Theobroma cacao HOM05D006353 ORTHO05D007993 2.0e-39 166.8 229 44.1
Sp4g20840 Schrenkiella parvula HOM05D006353 ORTHO05D007993 2.5e-39 166.4 232 43.1
AT2G38500 Arabidopsis thaliana HOM05D006353 ORTHO05D007993 3.3e-39 166.0 232 42.7
TAR636G2144 Trochodendron aralioides HOM05D006353 ORTHO05D007993 3.3e-39 166.0 212 46.7
Thhalv10016859m.g Eutrema salsugineum HOM05D006353 ORTHO05D007993 5.7e-39 165.2 232 42.7
Duzib212G0771 Durio zibethinus HOM05D006353 ORTHO05D007993 7.4e-39 164.9 227 44.5
Potri.016G134500 Populus trichocarpa HOM05D006353 ORTHO05D007993 7.4e-39 164.9 231 41.6
Ah.08g209640 Amaranthus hybridus HOM05D006353 ORTHO05D007993 9.7e-39 164.5 217 47.9
CARHR133200 Cardamine hirsuta HOM05D006353 ORTHO05D007993 9.7e-39 164.5 232 42.7
Cfa017056 Carpinus fangiana HOM05D006353 ORTHO05D007993 9.7e-39 164.5 205 44.4
Haze_21157 Corylus avellana HOM05D006353 ORTHO05D007993 2.8e-38 162.9 206 45.6
CiPaw.09G219300 Carya illinoinensis HOM05D006353 ORTHO05D007993 4.8e-38 162.2 206 43.7
AUR62006369 Chenopodium quinoa HOM05D006353 ORTHO05D007993 4.8e-38 162.2 216 46.8
MSTRG.18951 Avicennia marina HOM05D006353 ORTHO05D007993 8.2e-38 161.4 187 48.7
Hund19788 Selenicereus undatus HOM05D006353 ORTHO05D007993 1.1e-37 161.0 219 47.5
Manes.09G116500 Manihot esculenta HOM05D006353 ORTHO05D007993 1.8e-37 160.2 219 43.8
Duzib151G0311 Durio zibethinus HOM05D006353 ORTHO05D007993 5.3e-37 158.7 229 42.8
AUR62029702 Chenopodium quinoa HOM05D006353 ORTHO05D007993 6.9e-37 158.3 216 45.8
Gohir.A10G149700 Gossypium hirsutum HOM05D006353 ORTHO05D007993 2.6e-36 156.4 229 40.6
BcaC01g05532 Brassica carinata HOM05D006353 ORTHO05D007993 4.5e-36 155.6 203 42.4
C03p25230 Brassica napus HOM05D006353 ORTHO05D007993 4.5e-36 155.6 203 42.4
BolC3t14918H Brassica oleracea HOM05D006353 ORTHO05D007993 4.5e-36 155.6 203 42.4
A03p21360 Brassica napus HOM05D006353 ORTHO05D007993 7.7e-36 154.8 203 41.4
BraA03t11371Z Brassica rapa HOM05D006353 ORTHO05D007993 7.7e-36 154.8 203 41.9
Atru.chr8.2382 Acer truncatum HOM05D006353 ORTHO05D007993 1.0e-35 154.5 217 39.2
Gohir.D10G117100 Gossypium hirsutum HOM05D006353 ORTHO05D007993 1.0e-35 154.5 212 42.0
Gorai.011G129000 Gossypium raimondii HOM05D006353 ORTHO05D007993 1.0e-35 154.5 212 42.0
Ciclev10012094m.g Citrus clementina HOM05D006353 ORTHO05D007993 2.2e-35 153.3 230 41.7
ECA248G0672 Erigeron canadensis HOM05D006353 ORTHO05D007993 2.2e-35 153.3 200 42.5
HanXRQChr14g0433401 Helianthus annuus HOM05D006353 ORTHO05D007993 2.2e-35 153.3 200 42.5
Sabra04G0151900 Salix brachista HOM05D006353 ORTHO05D007993 8.5e-35 151.4 204 42.2
BcaB01g03678 Brassica carinata HOM05D006353 ORTHO05D007993 2.5e-34 149.8 204 41.7
PGSC0003DMG400004416 Solanum tuberosum HOM05D006353 ORTHO05D007993 9.4e-34 147.9 187 43.3
Lsat_1_v5_gn_5_150140 Lactuca sativa HOM05D006353 ORTHO05D007993 1.6e-33 147.1 195 42.6
Sc07g0005810 Simmondsia chinensis HOM05D006353 ORTHO05D007993 1.6e-33 147.1 214 43.5
TWI74G0177 Tripterygium wilfordii HOM05D006353 ORTHO05D007993 2.1e-33 146.7 213 38.5
Lsat_1_v5_gn_8_107941 Lactuca sativa HOM05D006353 ORTHO05D007993 4.7e-33 145.6 217 38.2
RcHm_v2.0_Chr3g0460831 Rosa chinensis HOM05D006353 ORTHO05D007993 7.9e-33 144.8 209 40.2
BcaB01g03677 Brassica carinata HOM05D006353 ORTHO05D007993 2.3e-32 143.3 203 39.9
Sopen09g010850 Solanum pennellii HOM05D006353 ORTHO05D007993 3.0e-32 142.9 188 42.6
SalBow5G5035 Salvia bowleyana HOM05D006353 ORTHO05D007993 1.1e-31 141.0 191 45.0
SalBow5G5483 Salvia bowleyana HOM05D006353 ORTHO05D007993 1.1e-31 141.0 191 45.0
Nitab4.5_0003003g0010 Nicotiana tabacum HOM05D006353 ORTHO05D007993 1.5e-31 140.6 140 51.4
Prupe.6G291400 Prunus persica HOM05D006353 ORTHO05D007993 3.3e-31 139.4 231 40.7
Sc20g0006870 Simmondsia chinensis HOM05D006353 ORTHO05D007993 5.7e-31 138.7 190 45.3
arahy.Tifrunner.gnm1.ann1.FA4IPG Arachis hypogaea HOM05D006353 ORTHO05D007993 1.7e-30 137.1 205 40.0
arahy.Tifrunner.gnm1.ann1.0YL58U Arachis hypogaea HOM05D006353 ORTHO05D007993 2.2e-30 136.7 205 40.0
HanXRQChr16g0509461 Helianthus annuus HOM05D006353 ORTHO05D007993 2.2e-30 136.7 214 36.4
Manes.08G173800 Manihot esculenta HOM05D006353 ORTHO05D007993 2.8e-30 136.3 206 39.3
Peaxi162Scf00732g00043 Petunia axillaris HOM05D006353 ORTHO05D007993 6.3e-30 135.2 146 49.3
ECA236G3817 Erigeron canadensis HOM05D006353 ORTHO05D007993 3.1e-29 132.9 217 36.4
FAN05G4939 Fragaria x ananassa HOM05D006353 ORTHO05D007993 5.3e-29 132.1 211 39.8
Lj1g0007888 Lotus japonicus HOM05D006353 ORTHO05D007993 2.0e-28 130.2 203 40.4
MD12G1185800 Malus domestica HOM05D006353 ORTHO05D007993 4.5e-28 129.0 227 40.1
FAN14G4939 Fragaria x ananassa HOM05D006353 ORTHO05D007993 5.9e-28 128.6 195 41.0
FvH4_6g10130 Fragaria vesca HOM05D006353 ORTHO05D007993 7.7e-28 128.3 195 41.0
Glyma.18G215200 Glycine max HOM05D006353 ORTHO05D007993 1.0e-27 127.9 207 40.6
PSO384G2070 Papaver somniferum HOM05D006353 ORTHO05D007993 1.3e-27 127.5 252 34.1
PSO339G6092 Papaver somniferum HOM05D006353 ORTHO05D007993 2.2e-27 126.7 227 33.9
Nn2g10337 Nelumbo nucifera HOM05D006353 ORTHO05D007993 2.9e-27 126.3 216 38.0
Phvul.008G084100 Phaseolus vulgaris HOM05D006353 ORTHO05D007993 2.9e-27 126.3 205 40.5
VMungo1383G2355 Vigna mungo HOM05D006353 ORTHO05D007993 2.9e-27 126.3 205 40.5
Lalb_Chr19g0124031 Lupinus albus HOM05D006353 ORTHO05D007993 8.5e-27 124.8 209 39.2
Nitab4.5_0001469g0020 Nicotiana tabacum HOM05D006353 ORTHO05D007993 7.2e-26 121.7 140 46.4
FAN09G0411 Fragaria x ananassa HOM05D006353 ORTHO05D007993 2.1e-25 120.2 211 38.4
PGR004G2035 Punica granatum HOM05D006353 ORTHO05D007993 4.0e-24 115.9 217 37.3
Ca_07754_v3 Cicer arietinum L. HOM05D006353 ORTHO05D007993 2.0e-23 113.6 203 38.4
Ca_29600_v3 Cicer arietinum L. HOM05D006353 ORTHO05D007993 2.0e-23 113.6 203 38.4
MELO3C025210.2 Cucumis melo HOM05D006353 ORTHO05D007993 2.0e-23 113.6 214 35.5
COL.COLO4_16552 Corchorus olitorius HOM05D006353 ORTHO05D007993 1.3e-22 110.9 147 45.6
SGA_v2.0_scaffold85G26642 Striga asiatica HOM05D006353 ORTHO05D007993 2.8e-22 109.8 138 44.9
Medtr7g072635 Medicago truncatula HOM05D006353 ORTHO05D007993 3.7e-22 109.4 203 37.4
Medtr7g072870 Medicago truncatula HOM05D006353 ORTHO05D007993 3.7e-22 109.4 203 37.4
Eucgr.K01277 Eucalyptus grandis HOM05D006353 ORTHO05D007993 6.3e-22 108.6 208 34.6
FAN05G5674 Fragaria x ananassa HOM05D006353 ORTHO05D007993 6.3e-22 108.6 132 46.2
HPP92_022856 Vanilla planifolia HOM05D006353 ORTHO05D007993 8.2e-22 108.2 222 32.4
CiPaw.09G219500 Carya illinoinensis HOM05D006353 ORTHO05D007993 1.1e-21 107.8 97 58.8
Psat3g120040 Pisum sativum HOM05D006353 ORTHO05D007993 1.8e-21 107.1 185 40.0
CANSAT35G0573 Cannabis sativa HOM05D006353 ORTHO05D007993 4.1e-21 105.9 212 35.8
CsaV3_4G027090 Cucumis sativus L. HOM05D006353 ORTHO05D007993 9.1e-21 104.8 189 36.0
ClCG04G006410 Citrullus lanatus HOM05D006353 ORTHO05D007993 5.0e-19 99.0 213 35.2
Sed0002935 Sechium edule HOM05D006353 ORTHO05D007993 5.0e-19 99.0 213 35.7
TAR626G1633 Trochodendron aralioides HOM05D006831 ORTHO05D008256 8.5e-19 98.2 212 32.1
BcaB02g09177 Brassica carinata HOM05D006353 ORTHO05D007993 1.9e-18 97.1 140 42.9
Ciclev10025849m.g Citrus clementina HOM05D006831 ORTHO05D008256 1.9e-18 97.1 213 30.5
Hma1.2p1_1052F.1_g252320 Hydrangea macrophylla HOM05D006353 ORTHO05D007993 1.9e-18 97.1 172 43.0
DCAR_018544 Daucus carota HOM05D006353 ORTHO05D007993 3.2e-18 96.3 193 35.8
Atru.chr1.3517 Acer truncatum HOM05D006831 ORTHO05D008256 4.2e-18 95.9 217 30.9
TAR383G0884 Trochodendron aralioides HOM05D006831 ORTHO05D008256 5.5e-18 95.5 212 31.6
Dinv30442 Davidia involucrata HOM05D006831 ORTHO05D008256 3.6e-17 92.8 220 29.5
Thecc.06G098700 Theobroma cacao HOM05D006831 ORTHO05D008256 3.6e-17 92.8 220 30.5
Manes.11G034300 Manihot esculenta HOM05D006831 ORTHO05D008256 4.7e-17 92.4 190 28.4
Peaxi162Scf00038g00918 Petunia axillaris HOM05D006831 ORTHO05D008256 8.0e-17 91.7 185 32.4
QL05p020342 Quercus lobata HOM05D006831 ORTHO05D008256 5.2e-16 89.0 220 28.6
MBI04_g30107_MAGBIO Magnolia biondii HOM05D006831 ORTHO05D008256 6.8e-16 88.6 213 29.6
Duzib235G1306 Durio zibethinus HOM05D006831 ORTHO05D008256 8.8e-16 88.2 212 29.7
CANSAT56G0873 Cannabis sativa HOM05D006831 ORTHO05D008256 1.2e-15 87.8 187 28.9
Sabra01G0151300 Salix brachista HOM05D006831 ORTHO05D008256 3.4e-15 86.3 223 27.8
Potri.001G189400 Populus trichocarpa HOM05D006831 ORTHO05D008256 4.4e-15 85.9 223 26.9
ATR0681G315 Amborella trichopoda HOM05D006353 ORTHO05D007993 5.7e-15 85.5 160 33.1
Nitab4.5_0009505g0020 Nicotiana tabacum HOM05D006831 ORTHO05D008256 5.7e-15 85.5 160 35.0
Nn6g35309 Nelumbo nucifera HOM05D006831 ORTHO05D008256 7.5e-15 85.1 182 31.9
Gorai.011G071900 Gossypium raimondii HOM05D006831 ORTHO05D008256 9.8e-15 84.7 190 28.9
AUR62031907 Chenopodium quinoa HOM05D006831 ORTHO05D008256 1.7e-14 84.0 223 28.3
ECA247G2417 Erigeron canadensis HOM05D006831 ORTHO05D008256 2.2e-14 83.6 215 28.4
Gohir.D03G058400 Gossypium hirsutum HOM05D006831 ORTHO05D008256 2.2e-14 83.6 184 29.9
Gorai.003G062200 Gossypium raimondii HOM05D006831 ORTHO05D008256 2.2e-14 83.6 184 29.9
Gohir.A10G066100 Gossypium hirsutum HOM05D006831 ORTHO05D008256 2.8e-14 83.2 190 28.4
Solyc03g120970.3 Solanum lycopersicum HOM05D006831 ORTHO05D008256 2.8e-14 83.2 142 33.8
CiPaw.01G232000 Carya illinoinensis HOM05D006831 ORTHO05D008256 4.8e-14 82.4 221 26.2
COL.COLO4_30498 Corchorus olitorius HOM05D006831 ORTHO05D008256 4.8e-14 82.4 230 30.4
Actinidia21708 Actinidia chinensis HOM05D006831 ORTHO05D008256 6.3e-14 82.0 210 29.0
CSS0014632 Camellia sinensis var. sinensis HOM05D006831 ORTHO05D008256 6.3e-14 82.0 221 28.1
Cpa.g.sc109.6 Carica papaya HOM05D006831 ORTHO05D008256 8.3e-14 81.6 215 24.2
Cfa003655 Carpinus fangiana HOM05D006831 ORTHO05D008256 8.3e-14 81.6 220 26.8
PGSC0003DMG400002528 Solanum tuberosum HOM05D006831 ORTHO05D008256 1.4e-13 80.9 142 33.1
TWI12G0407 Tripterygium wilfordii HOM05D006831 ORTHO05D008256 2.4e-13 80.1 223 27.8
PSO210G4514 Papaver somniferum HOM05D006831 ORTHO05D008256 4.1e-13 79.3 185 27.6
CAN.G1143.6 Capsicum annuum HOM05D006831 ORTHO05D008256 5.4e-13 79.0 142 34.5
AUR62022199 Chenopodium quinoa HOM05D006831 ORTHO05D008256 5.4e-13 79.0 224 27.2
Gohir.D10G067400 Gossypium hirsutum HOM05D006831 ORTHO05D008256 5.4e-13 79.0 194 28.4
Sopen03g039800 Solanum pennellii HOM05D006831 ORTHO05D008256 5.4e-13 79.0 142 31.7
Gohir.A02G117700 Gossypium hirsutum HOM05D006831 ORTHO05D008256 9.1e-13 78.2 178 28.7
Sabra11G0033200 Salix brachista HOM05D006831 ORTHO05D008256 9.1e-13 78.2 206 26.2
Haze_06254 Corylus avellana HOM05D006831 ORTHO05D008256 1.2e-12 77.8 220 25.9
MD09G1204500 Malus domestica HOM05D006831 ORTHO05D008256 1.2e-12 77.8 226 26.5
PSO210G6112 Papaver somniferum HOM05D006831 ORTHO05D008256 1.2e-12 77.8 186 28.0
CiPaw.02G146100 Carya illinoinensis HOM05D006831 ORTHO05D008256 1.6e-12 77.4 188 27.7
Cc04_g02630 Coffea canephora HOM05D006831 ORTHO05D008256 2.0e-12 77.0 214 26.2
FAN02G1449 Fragaria x ananassa HOM05D006353 ORTHO05D007993 2.0e-12 77.0 131 38.2
Zm00001eb368790 Zea mays HOM05D006353 ORTHO05D007993 3.5e-12 76.3 205 30.7
Nitab4.5_0012387g0010 Nicotiana tabacum HOM05D006831 ORTHO05D008256 7.7e-12 75.1 139 33.8
Lalb_Chr04g0262951 Lupinus albus HOM05D006831 ORTHO05D008256 1.0e-11 74.7 211 26.1
Sed0018864 Sechium edule HOM05D006831 ORTHO05D008256 1.0e-11 74.7 206 28.2
Os01g0823400 Oryza sativa ssp. japonica HOM05D006353 ORTHO05D007993 1.7e-11 73.9 212 28.3
DCAR_016191 Daucus carota HOM05D006831 ORTHO05D008256 2.2e-11 73.6 164 32.3
Hma1.2p1_0430F.1_g151466 Hydrangea macrophylla HOM05D006831 ORTHO05D008256 3.8e-11 72.8 225 28.0
Prupe.3G060100 Prunus persica HOM05D006831 ORTHO05D008256 3.8e-11 72.8 222 26.1
ATR0705G209 Amborella trichopoda HOM05D006831 ORTHO05D008256 5.0e-11 72.4 166 27.1
ClCG00G002730 Citrullus lanatus HOM05D006831 ORTHO05D008256 1.5e-10 70.9 218 27.1
ClCG07G013280 Citrullus lanatus HOM05D006831 ORTHO05D008256 1.5e-10 70.9 218 27.1
MSTRG.11030 Avicennia marina HOM05D006831 ORTHO05D008256 1.9e-10 70.5 195 25.1
SalBow2G3477 Salvia bowleyana HOM05D006831 ORTHO05D008256 2.5e-10 70.1 200 25.5
Lj3g0006655 Lotus japonicus HOM05D006831 ORTHO05D008256 3.2e-10 69.7 190 26.3
Oeu050599.1 Olea europaea HOM05D006831 ORTHO05D008256 4.2e-10 69.3 216 25.5
Rhsim08G0227100 Rhododendron simsii HOM05D006831 ORTHO05D008256 7.2e-10 68.6 197 27.4
HanXRQChr10g0313251 Helianthus annuus HOM05D006831 ORTHO05D008256 2.7e-09 66.6 235 25.1
Lsat_1_v5_gn_5_134400 Lactuca sativa HOM05D006831 ORTHO05D008256 6.1e-09 65.5 214 25.7
Lj5A54G57 Lonicera japonica HOM05D006831 ORTHO05D008256 6.1e-09 65.5 171 26.3
vmacro18857 Vaccinium macrocarpon HOM05D006831 ORTHO05D008256 1.0e-08 64.7 233 25.3
SGA_v2.0_scaffold66G22536 Striga asiatica HOM05D001613 ORTHO05D008256 5.2e-08 62.4 140 30.0
HPP92_006371 Vanilla planifolia HOM05D006831 ORTHO05D008256 2.0e-07 60.5 221 27.6
Aa31LG4G70 Aethionema arabicum HOM05D006831 ORTHO05D008256 3.4e-07 59.7 173 29.5
HanXRQChr02g0032201 Helianthus annuus HOM05D006831 ORTHO05D008256 5.7e-07 58.9 142 27.5
SEGI_28444 Sequoiadendron giganteum HOM05D007537 ORTHO05D008256 7.5e-07 58.5 153 29.4
SEGI_29994 Sequoiadendron giganteum HOM05D007537 ORTHO05D008256 7.5e-07 58.5 153 29.4
Solyc09g018180.3 Solanum lycopersicum HOM05D006353 ORTHO05D007993 3.7e-06 56.2 44 61.4


User provided reference genes

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