Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv11352 Davidia involucrata HOM05D002740 ORTHO05D035063 1.0e-31 139.4 69 100.0
Dinv19266 Davidia involucrata HOM05D002740 ORTHO05D003126 4.9e-26 120.6 63 92.1
Lj1A74G101 Lonicera japonica HOM05D002740 ORTHO05D003126 3.5e-16 87.8 63 71.4
Solyc09g064510.3 Solanum lycopersicum HOM05D002740 ORTHO05D003126 7.8e-16 86.7 56 66.1
GSVIVG01028433001 Vitis vinifera HOM05D002740 ORTHO05D003126 7.8e-16 86.7 63 63.5
Nitab4.5_0000845g0210 Nicotiana tabacum HOM05D002740 ORTHO05D003126 1.0e-15 86.3 56 66.1
TWI32G1314 Tripterygium wilfordii HOM05D002740 ORTHO05D003126 1.0e-15 86.3 62 62.9
CAN.G536.13 Capsicum annuum HOM05D002740 ORTHO05D003126 1.7e-15 85.5 59 66.1
Nn1g02994 Nelumbo nucifera HOM05D002740 ORTHO05D003126 1.7e-15 85.5 64 64.1
Nitab4.5_0002435g0030 Nicotiana tabacum HOM05D002740 ORTHO05D003126 3.0e-15 84.7 56 64.3
PGSC0003DMG400008580 Solanum tuberosum HOM05D002740 ORTHO05D003126 3.0e-15 84.7 56 66.1
arahy.Tifrunner.gnm1.ann1.33UQPP Arachis hypogaea HOM05D002740 ORTHO05D003126 3.9e-15 84.3 59 66.1
arahy.Tifrunner.gnm1.ann1.JB472D Arachis hypogaea HOM05D002740 ORTHO05D003126 3.9e-15 84.3 59 66.1
Sopen09g025670 Solanum pennellii HOM05D002740 ORTHO05D003126 3.9e-15 84.3 56 64.3
Aqoxy5G00131 Aquilegia oxysepala HOM05D002740 ORTHO05D003126 5.1e-15 84.0 64 62.5
GSVIVG01001480001 Vitis vinifera HOM05D002740 ORTHO05D003126 5.1e-15 84.0 59 64.4
vmacro02711 Vaccinium macrocarpon HOM05D002740 ORTHO05D003126 6.6e-15 83.6 57 61.4
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 8.7e-15 83.2 64 62.5
Ciclev10023610m.g Citrus clementina HOM05D002740 ORTHO05D003126 1.1e-14 82.8 56 64.3
Nitab4.5_0000841g0010 Nicotiana tabacum HOM05D002740 ORTHO05D003126 1.1e-14 82.8 58 62.1
Nitab4.5_0002088g0010 Nicotiana tabacum HOM05D002740 ORTHO05D003126 1.1e-14 82.8 58 62.1
Psat6g144200 Pisum sativum HOM05D002740 ORTHO05D003126 1.1e-14 82.8 56 62.5
CiPaw.03G271200 Carya illinoinensis HOM05D002740 ORTHO05D003126 1.5e-14 82.4 60 60.0
Dinv07505 Davidia involucrata HOM05D002740 ORTHO05D003126 1.5e-14 82.4 62 58.1
Nn3g19799 Nelumbo nucifera HOM05D002740 ORTHO05D003126 1.5e-14 82.4 63 61.9
Potri.019G022700 Populus trichocarpa HOM05D002740 ORTHO05D003126 1.9e-14 82.0 54 68.5
TPR.G26625 Trifolium pratense HOM05D002740 ORTHO05D003126 1.9e-14 82.0 56 64.3
Actinidia37554 Actinidia chinensis HOM05D002740 ORTHO05D003126 2.5e-14 81.6 65 60.0
Lj5g0022875 Lotus japonicus HOM05D002740 ORTHO05D003126 2.5e-14 81.6 56 64.3
Peaxi162Scf00043g00272 Petunia axillaris HOM05D002740 ORTHO05D003126 2.5e-14 81.6 56 64.3
Medtr1g080470 Medicago truncatula HOM05D002740 ORTHO05D003126 3.3e-14 81.3 56 62.5
Phvul.008G137801 Phaseolus vulgaris HOM05D002740 ORTHO05D003126 3.3e-14 81.3 56 62.5
RcHm_v2.0_Chr6g0286581 Rosa chinensis HOM05D002740 ORTHO05D003126 3.3e-14 81.3 59 55.9
VMungo0720G1032 Vigna mungo HOM05D002740 ORTHO05D003126 3.3e-14 81.3 56 62.5
Glyma.10G164300 Glycine max HOM05D002740 ORTHO05D003126 4.3e-14 80.9 54 66.7
EL10Ac4g09762 Beta vulgaris HOM05D002740 ORTHO05D003126 5.6e-14 80.5 63 57.1
CSS0008677 Camellia sinensis var. sinensis HOM05D002740 ORTHO05D003126 5.6e-14 80.5 55 61.8
Sabra13G0045500 Salix brachista HOM05D002740 ORTHO05D003126 5.6e-14 80.5 54 64.8
FvH4_2g20480 Fragaria vesca HOM05D002740 ORTHO05D003126 9.6e-14 79.7 59 57.6
FAN24G0357 Fragaria x ananassa HOM05D002740 ORTHO05D003126 9.6e-14 79.7 59 57.6
FAN27G2178 Fragaria x ananassa HOM05D002740 ORTHO05D003126 9.6e-14 79.7 59 57.6
Glyma.20G226700 Glycine max HOM05D002740 ORTHO05D003126 1.3e-13 79.3 54 66.7
Gohir.D08G234800 Gossypium hirsutum HOM05D002740 ORTHO05D003126 1.3e-13 79.3 63 55.6
Gorai.004G249600 Gossypium raimondii HOM05D002740 ORTHO05D003126 1.3e-13 79.3 63 55.6
Ah.06g187970 Amaranthus hybridus HOM05D002740 ORTHO05D003126 1.6e-13 79.0 61 55.7
CAN.G94.6 Capsicum annuum HOM05D002740 ORTHO05D003126 1.6e-13 79.0 58 58.6
AUR62006985 Chenopodium quinoa HOM05D002740 ORTHO05D003126 2.1e-13 78.6 61 57.4
FAN15G0236 Fragaria x ananassa HOM05D002740 ORTHO05D003126 2.1e-13 78.6 59 55.9
Prupe.6G352500 Prunus persica HOM05D002740 ORTHO05D003126 2.1e-13 78.6 63 57.1
Cpa.g.sc87.32 Carica papaya HOM05D002740 ORTHO05D003126 2.8e-13 78.2 58 60.3
CiPaw.07G070800 Carya illinoinensis HOM05D002740 ORTHO05D003126 2.8e-13 78.2 54 63.0
Ca_10029_v3 Cicer arietinum L. HOM05D002740 ORTHO05D003126 2.8e-13 78.2 56 62.5
COL.COLO4_15534 Corchorus olitorius HOM05D002740 ORTHO05D003126 2.8e-13 78.2 60 56.7
Lsat_1_v5_gn_8_2520 Lactuca sativa HOM05D002740 ORTHO05D003126 2.8e-13 78.2 56 57.1
TWI60G0984 Tripterygium wilfordii HOM05D002740 ORTHO05D003126 2.8e-13 78.2 62 54.8
Thecc.01G249900 Theobroma cacao HOM05D002740 ORTHO05D003126 3.6e-13 77.8 63 57.1
AUR62000632 Chenopodium quinoa HOM05D002740 ORTHO05D003126 4.8e-13 77.4 61 55.7
Lj2A46T69 Lonicera japonica HOM05D002740 ORTHO05D003126 4.8e-13 77.4 56 57.1
MD12G1250300 Malus domestica HOM05D002740 ORTHO05D003126 4.8e-13 77.4 60 60.0
Potri.013G049300 Populus trichocarpa HOM05D002740 ORTHO05D003126 8.1e-13 76.6 54 61.1
Sc09g0001850 Simmondsia chinensis HOM05D002740 ORTHO05D003126 8.1e-13 76.6 65 52.3
Atru.chr2.1110 Acer truncatum HOM05D002740 ORTHO05D003126 1.4e-12 75.9 58 56.9
ATR0787G107 Amborella trichopoda HOM05D002740 ORTHO05D003126 1.4e-12 75.9 59 54.2
Duzib128G1958 Durio zibethinus HOM05D002740 ORTHO05D003126 1.4e-12 75.9 62 53.2
Lsat_1_v5_gn_9_11541 Lactuca sativa HOM05D002740 ORTHO05D003126 1.4e-12 75.9 63 57.1
TAR365G0402 Trochodendron aralioides HOM05D002740 ORTHO05D003126 1.4e-12 75.9 63 57.1
CANSAT54G3003 Cannabis sativa HOM05D002740 ORTHO05D003126 1.8e-12 75.5 54 57.4
Hma1.2p1_0130F.1_g060480 Hydrangea macrophylla HOM05D002740 ORTHO05D003126 1.8e-12 75.5 63 57.1
CSS0008679 Camellia sinensis var. sinensis HOM05D002740 ORTHO05D003126 2.4e-12 75.1 54 59.3
Lj8A197T37 Lonicera japonica HOM05D002740 ORTHO05D003126 2.4e-12 75.1 54 59.3
Ciclev10030905m.g Citrus clementina HOM05D002740 ORTHO05D003126 3.1e-12 74.7 54 59.3
DCAR_005516 Daucus carota HOM05D002740 ORTHO05D003126 3.1e-12 74.7 54 61.1
HanXRQChr10g0280201 Helianthus annuus HOM05D002740 ORTHO05D003126 3.1e-12 74.7 64 54.7
Actinidia06833 Actinidia chinensis HOM05D002740 ORTHO05D003126 4.0e-12 74.3 54 59.3
Cfa002487 Carpinus fangiana HOM05D002740 ORTHO05D003126 4.0e-12 74.3 59 55.9
Lalb_Chr02g0148991 Lupinus albus HOM05D002740 ORTHO05D003126 4.0e-12 74.3 54 57.4
MSTRG.12516 Avicennia marina HOM05D002740 ORTHO05D003126 5.3e-12 73.9 66 54.5
Haze_04394 Corylus avellana HOM05D002740 ORTHO05D003126 5.3e-12 73.9 54 59.3
MD04G1232700 Malus domestica HOM05D002740 ORTHO05D003126 5.3e-12 73.9 60 55.0
Duzib133G0998 Durio zibethinus HOM05D002740 ORTHO05D003126 6.9e-12 73.6 63 57.1
Oeu052082.1 Olea europaea HOM05D002740 ORTHO05D003126 6.9e-12 73.6 54 61.1
TAR365G1151 Trochodendron aralioides HOM05D002740 ORTHO05D003126 6.9e-12 73.6 63 55.6
Psat7g152280 Pisum sativum HOM05D002740 ORTHO05D003126 1.2e-11 72.8 52 57.7
Gohir.D07G158800 Gossypium hirsutum HOM05D002740 ORTHO05D003126 1.5e-11 72.4 63 57.1
Gorai.001G182000 Gossypium raimondii HOM05D002740 ORTHO05D003126 1.5e-11 72.4 63 57.1
Thecc.05G266800 Theobroma cacao HOM05D002740 ORTHO05D003126 1.5e-11 72.4 54 51.9
MSTRG.8171 Avicennia marina HOM05D002740 ORTHO05D003126 2.0e-11 72.0 54 59.3
Duzib106G0100 Durio zibethinus HOM05D002740 ORTHO05D003126 2.0e-11 72.0 56 53.6
Eucgr.H04213 Eucalyptus grandis HOM05D002740 ORTHO05D003126 2.0e-11 72.0 54 57.4
Gohir.A07G152600 Gossypium hirsutum HOM05D002740 ORTHO05D003126 2.0e-11 72.0 63 55.6
Manes.13G039600 Manihot esculenta HOM05D002740 ORTHO05D003126 2.0e-11 72.0 58 56.9
QL03p029148 Quercus lobata HOM05D002740 ORTHO05D003126 2.0e-11 72.0 54 57.4
Ah.02g118370 Amaranthus hybridus HOM05D002740 ORTHO05D003126 2.6e-11 71.6 61 52.5
Migut.F02056 Erythranthe guttata HOM05D002740 ORTHO05D003126 2.6e-11 71.6 54 57.4
Prupe.8G215100 Prunus persica HOM05D002740 ORTHO05D003126 2.6e-11 71.6 61 49.2
Hund07176 Selenicereus undatus HOM05D002740 ORTHO05D003126 2.6e-11 71.6 54 57.4
Solyc04g050190.4 Solanum lycopersicum HOM05D002740 ORTHO05D003126 2.6e-11 71.6 52 59.6
COL.COLO4_10203 Corchorus olitorius HOM05D002740 ORTHO05D003126 3.4e-11 71.2 61 55.7
TAR633G0934 Trochodendron aralioides HOM05D002740 ORTHO05D003126 3.4e-11 71.2 64 53.1
Aa31LG9G18030 Aethionema arabicum HOM05D002740 ORTHO05D003126 4.5e-11 70.9 60 53.3
FAN14G4679 Fragaria x ananassa HOM05D002740 ORTHO05D003126 4.5e-11 70.9 58 55.2
Sopen04g020910 Solanum pennellii HOM05D002740 ORTHO05D003126 4.5e-11 70.9 52 59.6
FAN09G1477 Fragaria x ananassa HOM05D002740 ORTHO05D003126 5.8e-11 70.5 59 52.5
Manes.09G146900 Manihot esculenta HOM05D002740 ORTHO05D003126 5.8e-11 70.5 53 54.7
QL09p041531 Quercus lobata HOM05D002740 ORTHO05D003126 5.8e-11 70.5 76 44.7
CSS0028111 Camellia sinensis var. sinensis HOM05D002740 ORTHO05D003126 7.6e-11 70.1 56 55.4
Cpa.g.sc51.3 Carica papaya HOM05D002740 ORTHO05D003126 7.6e-11 70.1 54 57.4
MELO3C010087.2 Cucumis melo HOM05D002740 ORTHO05D003126 7.6e-11 70.1 59 50.8
Duzib177G0935 Durio zibethinus HOM05D002740 ORTHO05D003126 7.6e-11 70.1 60 50.0
HanXRQChr11g0327251 Helianthus annuus HOM05D002740 ORTHO05D003126 7.6e-11 70.1 54 55.6
FAN05G0538 Fragaria x ananassa HOM05D002740 ORTHO05D003126 9.9e-11 69.7 59 52.5
FAN05G2066 Fragaria x ananassa HOM05D002740 ORTHO05D003126 9.9e-11 69.7 59 52.5
Gohir.A11G244600 Gossypium hirsutum HOM05D002740 ORTHO05D003126 9.9e-11 69.7 60 48.3
Nitab4.5_0010891g0030 Nicotiana tabacum HOM05D002740 ORTHO05D003126 9.9e-11 69.7 57 50.9
PSO764G0261 Papaver somniferum HOM05D002740 ORTHO05D003126 9.9e-11 69.7 56 51.8
ECA238G0995 Erigeron canadensis HOM05D002740 ORTHO05D003126 1.3e-10 69.3 52 55.8
Lsat_1_v5_gn_2_16740 Lactuca sativa HOM05D002740 ORTHO05D003126 1.3e-10 69.3 54 55.6
Nitab4.5_0000476g0220 Nicotiana tabacum HOM05D002740 ORTHO05D003126 1.3e-10 69.3 57 50.9
Aa31LG2G2010 Aethionema arabicum HOM05D002740 ORTHO05D003126 1.7e-10 68.9 53 54.7
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 1.7e-10 68.9 54 55.6
Manes.08G140900 Manihot esculenta HOM05D002740 ORTHO05D003126 1.7e-10 68.9 53 54.7
Manes.08G141500 Manihot esculenta HOM05D002740 ORTHO05D003126 1.7e-10 68.9 53 54.7
RcHm_v2.0_Chr3g0449211 Rosa chinensis HOM05D002740 ORTHO05D003126 1.7e-10 68.9 56 51.8
SGA_v2.0_scaffold62G21468 Striga asiatica HOM05D002740 ORTHO05D003126 1.7e-10 68.9 56 53.6
CARHR217090 Cardamine hirsuta HOM05D002740 ORTHO05D003126 2.2e-10 68.6 53 54.7
CDE02G1172 Ceratophyllum demersum HOM05D002740 ORTHO05D003126 2.2e-10 68.6 53 54.7
CDE08G1574 Ceratophyllum demersum HOM05D002740 ORTHO05D003126 2.2e-10 68.6 53 52.8
ClCG03G011470 Citrullus lanatus HOM05D002740 ORTHO05D003126 2.2e-10 68.6 59 49.2
Peaxi162Scf00156g00620 Petunia axillaris HOM05D002740 ORTHO05D003126 2.2e-10 68.6 57 50.9
Gohir.D11G254700 Gossypium hirsutum HOM05D002740 ORTHO05D003126 2.9e-10 68.2 60 46.7
Gorai.007G273300 Gossypium raimondii HOM05D002740 ORTHO05D003126 2.9e-10 68.2 60 46.7
SGA_v2.0_scaffold329G48830 Striga asiatica HOM05D002740 ORTHO05D003126 2.9e-10 68.2 56 51.8
Cc09_g02980 Coffea canephora HOM05D002740 ORTHO05D003126 3.8e-10 67.8 59 49.2
FvH4_6g01520 Fragaria vesca HOM05D002740 ORTHO05D003126 3.8e-10 67.8 54 55.6
FAN14G2846 Fragaria x ananassa HOM05D002740 ORTHO05D003126 3.8e-10 67.8 54 55.6
MBI16_g02733_MAGBIO Magnolia biondii HOM05D002740 ORTHO05D003126 3.8e-10 67.8 61 50.8
THA.LOC104823789 Tarenaya hassleriana HOM05D002740 ORTHO05D003126 3.8e-10 67.8 60 45.0
PSO832G0576 Papaver somniferum HOM05D002740 ORTHO05D003126 4.9e-10 67.4 56 50.0
TAR362G1135 Trochodendron aralioides HOM05D002740 ORTHO05D003126 4.9e-10 67.4 54 51.9
CsaV3_1G045030 Cucumis sativus L. HOM05D002740 ORTHO05D003126 6.4e-10 67.0 55 50.9
HanXRQChr14g0431491 Helianthus annuus HOM05D002740 ORTHO05D003126 6.4e-10 67.0 54 51.9
Carub.0007s3054 Capsella rubella HOM05D002740 ORTHO05D003126 1.4e-09 65.9 53 52.8
HanXRQChr14g0443151 Helianthus annuus HOM05D002740 ORTHO05D003126 1.4e-09 65.9 53 49.1
Os08g0566000 Oryza sativa ssp. japonica HOM05D002740 ORTHO05D003126 1.4e-09 65.9 60 53.3
Zm00001eb038600 Zea mays HOM05D002740 ORTHO05D003126 1.9e-09 65.5 60 53.3
Zm00001eb175630 Zea mays HOM05D002740 ORTHO05D003126 1.9e-09 65.5 60 53.3
Oeu010185.1 Olea europaea HOM05D002740 ORTHO05D003126 2.4e-09 65.1 54 48.1
Sp7g07700 Schrenkiella parvula HOM05D002740 ORTHO05D003126 3.2e-09 64.7 53 52.8
BcaC07g37707 Brassica carinata HOM05D002740 ORTHO05D003126 5.4e-09 63.9 60 45.0
A08p10090 Brassica napus HOM05D002740 ORTHO05D003126 5.4e-09 63.9 60 45.0
BolC8t48073H Brassica oleracea HOM05D002740 ORTHO05D003126 5.4e-09 63.9 60 45.0
BraA08t33006Z Brassica rapa HOM05D002740 ORTHO05D003126 5.4e-09 63.9 60 45.0
Sc16g0009790 Simmondsia chinensis HOM05D002740 ORTHO05D003126 9.3e-09 63.2 52 51.9
unitig_88.g27818 Utricularia gibba HOM05D002740 ORTHO05D003126 1.2e-08 62.8 59 44.1
Peaxi162Scf00077g00094 Petunia axillaris HOM05D002740 ORTHO05D003126 1.6e-08 62.4 59 47.5
TWI75G0335 Tripterygium wilfordii HOM05D002740 ORTHO05D003126 1.6e-08 62.4 63 47.6
Thhalv10002337m.g Eutrema salsugineum HOM05D002740 ORTHO05D003126 2.1e-08 62.0 50 50.0
AL7G43640 Arabidopsis lyrata HOM05D002740 ORTHO05D003126 3.5e-08 61.2 50 52.0
AT5G32470 Arabidopsis thaliana HOM05D002740 ORTHO05D003126 3.5e-08 61.2 50 52.0
BcaB04g18093 Brassica carinata HOM05D002740 ORTHO05D003126 3.5e-08 61.2 53 47.2
MD05G1188600 Malus domestica HOM05D002740 ORTHO05D003126 6.0e-08 60.5 55 54.5
SalBow1G0650 Salvia bowleyana HOM05D002740 ORTHO05D003126 7.9e-08 60.1 56 46.4
HPP92_025821 Vanilla planifolia HOM05D002740 ORTHO05D003126 7.9e-08 60.1 63 42.9
Migut.N02233 Erythranthe guttata HOM05D002740 ORTHO05D003126 1.8e-07 58.9 53 47.2
Eucgr.A01666 Eucalyptus grandis HOM05D002740 ORTHO05D003126 1.9e-06 55.5 56 46.4
SHI23920 Sapria himalayana HOM05D002740 ORTHO05D003126 1.9e-06 55.5 54 42.6
Sed0005304 Sechium edule HOM05D002740 ORTHO05D003126 1.9e-06 55.5 53 41.5
SMO203G0094 Selaginella moellendorffii HOM05D002740 ORTHO05D003126 1.9e-06 55.5 53 47.2
Solyc05g055900.3 Solanum lycopersicum HOM05D002740 ORTHO05D003126 1.9e-06 55.5 52 44.2
Haze_24709 Corylus avellana HOM05D002740 ORTHO05D003126 2.5e-06 55.1 43 55.8
Pp3c12_23680 Physcomitrium patens HOM05D002740 ORTHO05D003126 3.3e-06 54.7 54 40.7
RcHm_v2.0_Chr7g0224921 Rosa chinensis HOM05D060373 ORTHO05D035063 3.3e-06 54.7 43 58.1


User provided reference genes

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