Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv11287 Davidia involucrata HOM05D005114 ORTHO05D006301 7.6e-64 246.9 116 100.0
Dinv13785 Davidia involucrata HOM05D005114 ORTHO05D006301 4.5e-24 114.8 56 92.9
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 5.5e-22 107.8 57 89.5
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 8.0e-13 77.4 60 63.3
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 8.0e-13 77.4 60 65.0
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.4e-12 76.6 60 65.0
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 1.8e-12 76.3 60 60.0
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.8e-12 76.3 59 64.4
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 1.8e-12 76.3 59 64.4
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.8e-12 76.3 60 63.3
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 2.3e-12 75.9 60 61.7
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 3.0e-12 75.5 43 81.4
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 4.0e-12 75.1 58 60.3
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 4.0e-12 75.1 60 61.7
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 5.2e-12 74.7 63 58.7
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 6.8e-12 74.3 59 62.7
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 6.8e-12 74.3 41 75.6
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 1.5e-11 73.2 44 72.7
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 2.0e-11 72.8 65 56.9
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 2.6e-11 72.4 59 61.0
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 5.7e-11 71.2 43 72.1
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 7.5e-11 70.9 43 72.1
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 7.5e-11 70.9 43 67.4
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 7.5e-11 70.9 43 67.4
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 9.8e-11 70.5 65 55.4
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 1.3e-10 70.1 60 55.0
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 1.7e-10 69.7 43 74.4
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 1.7e-10 69.7 61 57.4
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 1.7e-10 69.7 54 64.8
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 2.2e-10 69.3 65 56.9
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 2.2e-10 69.3 43 74.4
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 2.8e-10 68.9 44 70.5
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 2.8e-10 68.9 53 62.3
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 4.8e-10 68.2 43 69.8
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 4.8e-10 68.2 43 69.8
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 4.8e-10 68.2 43 69.8
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 4.8e-10 68.2 60 58.3
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 1.4e-09 66.6 48 60.4
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 1.8e-09 66.2 54 61.1
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 1.8e-09 66.2 60 58.3
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 2.4e-09 65.9 61 55.7
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 3.1e-09 65.5 43 74.4
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 3.1e-09 65.5 61 54.1
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 4.1e-09 65.1 56 53.6
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 4.1e-09 65.1 61 49.2
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 4.1e-09 65.1 44 68.2
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 5.4e-09 64.7 43 67.4
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 7.0e-09 64.3 68 45.6
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 7.0e-09 64.3 43 65.1
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 9.1e-09 63.9 56 53.6
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 1.2e-08 63.5 46 63.0
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 1.2e-08 63.5 59 50.8
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 1.2e-08 63.5 59 50.8
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 1.6e-08 63.2 55 54.5
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 2.0e-08 62.8 38 65.8
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 2.0e-08 62.8 60 55.0
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 2.0e-08 62.8 43 55.8
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 2.0e-08 62.8 60 51.7
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 2.0e-08 62.8 54 51.9
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 3.5e-08 62.0 58 58.6
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 3.5e-08 62.0 58 58.6
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 3.5e-08 62.0 60 51.7
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 1.0e-07 60.5 47 55.3
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 1.0e-07 60.5 44 61.4
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 1.0e-07 60.5 46 58.7
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 1.7e-07 59.7 28 85.7
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 2.9e-07 58.9 43 58.1
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 2.9e-07 58.9 56 50.0
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 2.9e-07 58.9 43 58.1
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 3.8e-07 58.5 43 60.5
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 3.8e-07 58.5 57 49.1
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 5.0e-07 58.2 43 55.8
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 5.0e-07 58.2 44 61.4
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 5.0e-07 58.2 44 54.5
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 8.6e-07 57.4 59 50.8
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 8.6e-07 57.4 43 51.2
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 1.5e-06 56.6 43 53.5
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 7.2e-06 54.3 32 71.9
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 9.5e-06 53.9 60 46.7


User provided reference genes

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