Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 3.6e-57 224.9 134 100.0
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 5.7e-39 164.5 133 82.0
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 5.9e-36 154.5 130 64.6
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 1.0e-32 143.7 151 66.2
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 3.7e-30 135.2 134 64.2
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 1.2e-28 130.2 138 61.6
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 8.6e-27 124.0 138 60.9
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 1.5e-26 123.2 118 59.3
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 5.6e-26 121.3 129 59.7
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.2e-25 120.2 129 45.7
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 1.6e-25 119.8 125 61.6
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 2.8e-25 119.0 118 58.5
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 6.2e-25 117.9 134 61.9
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 8.1e-25 117.5 127 56.7
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 2.3e-24 115.9 125 64.8
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 3.1e-24 115.5 129 59.7
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 5.2e-24 114.8 135 54.1
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 5.2e-24 114.8 135 54.1
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 6.8e-24 114.4 128 51.6
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 8.9e-24 114.0 120 64.2
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 1.5e-23 113.2 131 56.5
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 1.5e-23 113.2 123 55.3
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 1.5e-23 113.2 119 58.0
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 2.0e-23 112.8 120 66.7
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 2.0e-23 112.8 125 50.4
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 4.4e-23 111.7 130 54.6
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 7.5e-23 110.9 128 53.9
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 9.8e-23 110.5 126 57.1
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 9.8e-23 110.5 57 75.4
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.3e-22 110.2 120 65.8
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 1.3e-22 110.2 122 65.6
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 1.3e-22 110.2 126 55.6
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 1.7e-22 109.8 138 58.7
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 1.7e-22 109.8 142 52.8
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 1.7e-22 109.8 120 60.8
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 2.2e-22 109.4 133 62.4
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 3.7e-22 108.6 118 61.9
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 4.9e-22 108.2 143 52.4
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 6.4e-22 107.8 130 55.4
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 1.4e-21 106.7 143 49.7
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 1.4e-21 106.7 116 58.6
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 1.9e-21 106.3 116 63.8
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 1.9e-21 106.3 129 61.2
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 5.4e-21 104.8 137 52.6
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 5.4e-21 104.8 117 52.1
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 7.1e-21 104.4 135 60.0
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 9.2e-21 104.0 152 57.9
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 1.2e-20 103.6 134 56.0
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 1.2e-20 103.6 123 52.8
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 1.6e-20 103.2 151 49.7
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 2.1e-20 102.8 127 48.0
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 2.1e-20 102.8 124 63.7
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 2.1e-20 102.8 131 45.0
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 3.5e-20 102.1 149 52.3
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 4.6e-20 101.7 128 59.4
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 6.0e-20 101.3 127 51.2
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 7.8e-20 100.9 141 55.3
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 1.0e-19 100.5 125 52.8
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 1.3e-19 100.1 119 52.9
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 2.3e-19 99.4 125 52.0
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 3.0e-19 99.0 122 49.2
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 5.1e-19 98.2 126 55.6
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 6.6e-19 97.8 126 57.1
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 1.1e-18 97.1 123 52.8
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 1.1e-18 97.1 156 48.7
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 1.1e-18 97.1 148 52.7
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 1.1e-18 97.1 116 49.1
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 1.1e-18 97.1 128 53.9
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 1.5e-18 96.7 145 56.6
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 1.5e-18 96.7 139 51.1
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 1.9e-18 96.3 145 54.5
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.3e-18 95.5 120 57.5
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.3e-18 95.5 120 57.5
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.3e-18 95.5 120 57.5
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.3e-18 95.5 120 57.5
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 5.6e-18 94.7 121 44.6
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 5.6e-18 94.7 149 55.0
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 5.6e-18 94.7 119 45.4
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 5.6e-18 94.7 157 49.0
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 5.6e-18 94.7 57 66.7
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 7.3e-18 94.4 128 50.0
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 9.5e-18 94.0 56 60.7
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 1.6e-17 93.2 125 56.0
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 1.6e-17 93.2 152 42.8
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 1.6e-17 93.2 124 41.9
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 2.1e-17 92.8 124 60.5
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 2.1e-17 92.8 57 59.6
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 2.1e-17 92.8 148 51.4
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 2.8e-17 92.4 133 52.6
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 2.8e-17 92.4 140 56.4
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 6.2e-17 91.3 122 37.7
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 8.1e-17 90.9 128 51.6
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 1.1e-16 90.5 164 38.4
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.1e-16 90.5 137 47.4
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 1.8e-16 89.7 133 52.6
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 2.3e-16 89.4 128 50.8
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 2.3e-16 89.4 56 62.5
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 2.3e-16 89.4 56 62.5
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 2.3e-16 89.4 56 62.5
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 2.3e-16 89.4 56 62.5
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.3e-16 89.4 135 42.2
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 3.1e-16 89.0 142 50.0
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 5.2e-16 88.2 56 60.7
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 5.2e-16 88.2 178 39.9
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 6.8e-16 87.8 56 60.7
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 6.8e-16 87.8 56 60.7
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.2e-15 87.0 124 55.6
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 1.2e-15 87.0 132 40.2
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 2.0e-15 86.3 128 50.0
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 2.0e-15 86.3 56 58.9
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 2.0e-15 86.3 56 58.9
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 2.0e-15 86.3 56 58.9
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 2.0e-15 86.3 56 58.9
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 2.0e-15 86.3 56 58.9
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 2.0e-15 86.3 56 58.9
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 2.0e-15 86.3 56 58.9
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 2.0e-15 86.3 56 58.9
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 2.0e-15 86.3 140 52.1
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 2.6e-15 85.9 56 58.9
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 2.6e-15 85.9 129 38.0
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 3.4e-15 85.5 52 61.5
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 4.4e-15 85.1 151 43.7
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 4.4e-15 85.1 130 52.3
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 4.4e-15 85.1 134 54.5
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 5.8e-15 84.7 139 44.6
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 7.6e-15 84.3 58 55.2
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 6.4e-14 81.3 123 55.3
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 6.4e-14 81.3 175 41.1
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 6.4e-14 81.3 120 42.5
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 7.1e-13 77.8 51 56.9
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 1.6e-12 76.6 51 54.9
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.6e-12 76.6 51 54.9
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 1.6e-12 76.6 141 44.7
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 1.6e-12 76.6 141 44.7
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.1e-12 76.3 51 54.9
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.1e-12 76.3 51 54.9
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 2.7e-12 75.9 132 40.2
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 2.7e-12 75.9 161 37.3
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 4.6e-12 75.1 49 57.1
vmacro14931 Vaccinium macrocarpon HOM05D001530 ORTHO05D003676 6.0e-12 74.7 124 39.5
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 1.0e-11 73.9 48 60.4
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 1.3e-11 73.6 53 56.6
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 2.3e-11 72.8 48 60.4
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 3.0e-11 72.4 114 48.2
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 3.0e-11 72.4 55 50.9
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 3.0e-11 72.4 48 60.4
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 1.1e-10 70.5 54 51.9
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 1.9e-10 69.7 51 52.9
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 2.5e-10 69.3 48 56.2
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 2.5e-10 69.3 48 56.2
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 7.3e-10 67.8 49 53.1
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 2.8e-09 65.9 49 49.0
HPP92_008197 Vanilla planifolia HOM05D024720 ORTHO05D006225 4.0e-08 62.0 114 39.5
Nn3g17864 Nelumbo nucifera HOM05D005179 ORTHO05D006225 6.4e-06 54.7 116 26.7


User provided reference genes

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