Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 5.5e-74 281.2 176 100.0
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 8.6e-59 230.7 175 73.1
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 4.9e-54 214.9 189 69.3
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 3.5e-52 208.8 176 69.9
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 1.6e-49 199.9 197 61.4
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 5.4e-45 184.9 193 62.2
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 9.2e-45 184.1 176 72.7
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 1.2e-44 183.7 192 60.9
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 2.0e-44 183.0 176 63.6
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 3.5e-44 182.2 177 63.8
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.5e-44 182.2 176 61.4
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.7e-43 179.9 177 63.3
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 3.0e-43 179.1 177 62.7
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 6.6e-43 177.9 178 62.4
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.1e-42 177.2 177 63.3
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.5e-42 176.0 180 66.1
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 5.6e-42 174.9 176 61.4
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 1.6e-41 173.3 176 60.8
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 2.1e-41 172.9 176 59.7
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 2.8e-41 172.6 175 58.9
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 2.8e-41 172.6 175 59.4
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 3.6e-41 172.2 181 59.7
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.0e-40 168.7 176 67.0
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 6.8e-40 167.9 183 59.6
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 8.9e-40 167.5 180 58.9
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 1.5e-39 166.8 176 59.7
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 1.5e-39 166.8 173 59.0
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 5.8e-39 164.9 179 59.2
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 5.8e-39 164.9 181 58.0
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 7.5e-39 164.5 178 68.0
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 2.2e-38 162.9 176 60.8
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 2.2e-38 162.9 181 58.0
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 2.9e-38 162.5 218 50.5
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 6.4e-38 161.4 176 56.8
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 8.3e-38 161.0 183 57.4
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 8.3e-38 161.0 174 56.3
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 2.4e-37 159.5 179 58.7
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 2.4e-37 159.5 175 57.1
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 3.2e-37 159.1 123 76.4
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 5.4e-37 158.3 179 58.1
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 5.4e-37 158.3 190 53.7
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 9.2e-37 157.5 182 56.6
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 1.6e-36 156.8 190 53.2
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 1.6e-36 156.8 173 57.8
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 2.7e-36 156.0 176 60.2
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 3.5e-36 155.6 179 57.0
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 6.0e-36 154.8 173 56.6
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 2.3e-35 152.9 177 64.4
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 3.0e-35 152.5 175 57.7
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 5.1e-35 151.8 173 56.1
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 6.6e-35 151.4 182 54.9
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 1.5e-34 150.2 182 55.5
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.5e-34 150.2 182 55.5
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 2.5e-34 149.4 193 52.3
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 4.3e-34 148.7 177 56.5
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 5.6e-34 148.3 175 54.3
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 9.5e-34 147.5 177 54.2
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 9.5e-34 147.5 179 52.5
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.2e-33 147.1 175 52.6
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 1.2e-33 147.1 180 52.8
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 2.1e-33 146.4 175 53.1
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 2.1e-33 146.4 142 61.3
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.8e-33 146.0 163 65.6
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 6.2e-33 144.8 173 54.3
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 6.2e-33 144.8 178 52.2
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 2.4e-32 142.9 173 54.3
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 4.0e-32 142.1 173 54.3
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 4.0e-32 142.1 173 54.9
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 4.0e-32 142.1 173 54.3
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 5.2e-32 141.7 213 54.0
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 5.2e-32 141.7 175 54.3
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 5.2e-32 141.7 173 52.6
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 6.8e-32 141.4 173 54.3
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 1.2e-31 140.6 173 54.3
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 1.5e-31 140.2 173 53.2
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 4.4e-31 138.7 197 49.7
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 4.4e-31 138.7 173 53.8
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 5.8e-31 138.3 179 52.0
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 5.8e-31 138.3 172 64.0
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 7.6e-31 137.9 175 52.0
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 9.9e-31 137.5 177 52.5
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.3e-30 137.1 182 52.2
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 1.7e-30 136.7 193 48.7
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 4.9e-30 135.2 213 45.5
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 6.4e-30 134.8 180 52.8
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 6.4e-30 134.8 180 52.8
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.1e-29 134.0 180 51.1
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 1.1e-29 134.0 173 49.7
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 1.4e-29 133.7 213 45.1
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 1.4e-29 133.7 191 52.9
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 2.4e-29 132.9 213 45.1
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 7.1e-29 131.3 176 51.7
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 1.2e-28 130.6 192 47.9
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 1.7e-27 126.7 193 46.6
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 1.7e-27 126.7 173 50.3
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 2.3e-27 126.3 184 50.0
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 2.3e-27 126.3 173 57.8
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 8.7e-27 124.4 173 49.7
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 3.3e-26 122.5 169 50.3
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 4.3e-26 122.1 188 46.3
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 5.6e-26 121.7 179 46.9
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 1.2e-25 120.6 193 46.6
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.2e-25 120.6 198 47.0
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 2.1e-25 119.8 173 47.4
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 2.1e-25 119.8 182 44.5
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 2.1e-25 119.8 195 46.7
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 6.2e-25 118.2 180 52.2
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 1.4e-24 117.1 173 47.4
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 1.4e-24 117.1 173 45.1
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 1.8e-24 116.7 168 53.0
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 2.4e-24 116.3 122 60.7
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 2.4e-24 116.3 174 48.9
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 3.1e-24 115.9 212 43.9
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 9.0e-24 114.4 175 48.0
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 1.2e-23 114.0 146 65.8
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 4.4e-23 112.1 173 46.8
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 5.8e-23 111.7 176 54.0
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 7.6e-23 111.3 178 44.9
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 9.9e-23 110.9 170 46.5
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 1.7e-22 110.2 175 56.0
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 2.2e-22 109.8 173 45.7
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 1.9e-21 106.7 170 55.9
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 1.9e-21 106.7 141 50.4
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 5.4e-21 105.1 169 54.4
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 9.3e-21 104.4 120 54.2
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 1.2e-20 104.0 173 53.2
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 2.1e-20 103.2 170 44.7
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 1.0e-19 100.9 173 43.9
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 1.3e-19 100.5 190 43.7
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 3.3e-18 95.9 185 45.9
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 5.6e-18 95.1 171 41.5
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 1.3e-17 94.0 134 50.0
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 4.0e-16 89.0 173 40.5
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 5.8e-15 85.1 133 43.6
PGR031G1662 Punica granatum HOM05D004018 ORTHO05D004408 5.4e-13 78.6 102 47.1
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 1.6e-12 77.0 181 36.5
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 3.5e-12 75.9 126 38.1
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 3.5e-12 75.9 155 38.1
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 6.7e-11 71.6 73 57.5
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 8.7e-11 71.2 155 41.3
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 1.9e-10 70.1 102 41.2
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 7.4e-10 68.2 76 56.6
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 1.3e-09 67.4 185 34.6
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 3.1e-08 62.8 198 30.8
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 6.9e-08 61.6 111 40.5
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 6.9e-08 61.6 160 34.4
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 1.2e-07 60.8 121 34.7
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 3.4e-07 59.3 120 40.8


User provided reference genes

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