Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 6.3e-227 790.4 398 100.0
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 9.6e-167 590.5 390 75.6
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 2.0e-164 582.8 414 72.0
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 1.8e-157 559.7 398 71.9
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 1.7e-155 553.1 373 74.0
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 2.2e-155 552.7 428 67.1
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 2.9e-155 552.4 353 76.5
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 1.9e-154 549.7 368 73.6
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 2.5e-154 549.3 396 69.4
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 3.2e-154 548.9 435 64.6
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 2.7e-153 545.8 374 73.8
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 6.1e-153 544.7 405 69.6
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 1.0e-152 543.9 375 72.3
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 2.3e-152 542.7 336 76.5
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 9.7e-151 537.3 392 70.9
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 4.1e-149 531.9 376 71.8
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 6.9e-149 531.2 373 71.8
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 1.2e-148 530.4 390 69.5
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 2.0e-148 529.6 359 72.1
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 2.0e-148 529.6 376 71.5
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 2.9e-147 525.8 361 71.7
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 8.5e-147 524.2 388 69.1
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 8.5e-147 524.2 381 70.6
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 1.9e-146 523.1 396 67.4
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 4.2e-146 521.9 391 68.5
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 7.2e-146 521.2 401 67.6
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 3.6e-145 518.8 372 70.2
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 6.1e-145 518.1 380 70.0
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 1.4e-144 516.9 380 69.7
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 3.0e-144 515.8 407 64.4
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 5.1e-144 515.0 376 69.7
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 6.7e-144 514.6 406 65.0
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 2.6e-143 512.7 380 69.5
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 5.7e-143 511.5 372 68.0
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 9.7e-143 510.8 297 83.5
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 4.8e-142 508.4 316 77.2
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 6.3e-142 508.1 382 67.5
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 8.2e-142 507.7 372 68.8
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 1.1e-141 507.3 376 67.6
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 7.0e-141 504.6 451 60.3
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 9.1e-141 504.2 396 65.2
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 2.6e-140 502.7 336 72.6
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 1.0e-139 500.7 387 66.4
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 2.2e-139 499.6 380 66.8
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 2.9e-139 499.2 391 66.8
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 3.8e-139 498.8 405 63.7
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 5.0e-139 498.4 397 64.7
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 8.5e-139 497.7 407 65.1
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 3.2e-138 495.7 397 64.7
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 7.2e-138 494.6 392 64.0
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 7.2e-138 494.6 372 66.4
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 9.4e-138 494.2 426 62.2
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 1.6e-137 493.4 397 65.0
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 6.7e-136 488.0 325 73.8
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 6.7e-136 488.0 346 68.5
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 8.8e-136 487.6 392 64.5
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.5e-135 486.9 418 61.5
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.5e-135 486.9 418 61.5
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 2.6e-135 486.1 335 69.0
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 4.4e-135 485.3 392 63.0
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 1.4e-133 480.3 391 65.0
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 1.4e-133 480.3 372 63.2
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 2.4e-133 479.6 336 68.8
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 5.3e-133 478.4 386 63.0
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 9.1e-133 477.6 406 61.8
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 1.6e-132 476.9 405 62.5
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 4.5e-132 475.3 410 59.8
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 5.9e-132 474.9 383 63.2
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 1.0e-131 474.2 458 56.8
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 1.0e-131 474.2 400 61.5
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 1.3e-131 473.8 351 66.1
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 1.7e-131 473.4 374 64.7
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 2.2e-131 473.0 368 62.5
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 2.2e-131 473.0 385 60.5
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 2.9e-131 472.6 390 61.8
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 2.9e-131 472.6 413 62.2
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 3.8e-131 472.2 316 71.2
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 3.8e-131 472.2 392 62.0
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 5.0e-131 471.9 387 62.3
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 6.5e-131 471.5 337 70.9
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 2.5e-130 469.5 360 65.6
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 4.2e-130 468.8 389 62.5
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 5.5e-130 468.4 392 61.7
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 9.4e-130 467.6 376 63.0
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 6.1e-129 464.9 376 62.5
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 2.3e-128 463.0 315 70.8
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 4.0e-128 462.2 337 66.8
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 8.8e-128 461.1 332 66.3
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 1.5e-127 460.3 386 60.6
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 7.5e-127 458.0 327 69.4
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 1.7e-126 456.8 327 69.4
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 2.2e-123 446.4 339 63.1
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 7.2e-122 441.4 376 59.6
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 1.2e-121 440.7 379 59.1
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 2.7e-121 439.5 419 59.2
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 3.6e-121 439.1 336 62.5
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 8.0e-121 438.0 360 59.4
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 1.0e-120 437.6 378 59.8
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 1.8e-120 436.8 336 61.9
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 2.3e-120 436.4 360 58.9
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 3.0e-120 436.0 381 62.5
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 1.2e-119 434.1 336 61.6
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 3.4e-119 432.6 379 57.3
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 3.4e-119 432.6 396 56.3
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 2.2e-118 429.9 337 61.4
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 3.7e-118 429.1 348 59.5
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 1.1e-117 427.6 347 59.4
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 2.0e-116 423.3 336 60.4
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 2.0e-116 423.3 336 60.4
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 3.5e-116 422.5 347 58.8
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 5.9e-116 421.8 373 59.8
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 7.7e-116 421.4 352 60.2
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 5.5e-114 415.2 401 55.1
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 1.2e-113 414.1 421 52.7
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 1.5e-111 407.1 288 70.1
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 5.7e-111 405.2 267 73.4
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 7.5e-111 404.8 362 54.7
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 3.5e-108 396.0 334 56.3
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 3.4e-103 379.4 337 56.1
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 4.4e-103 379.0 267 67.4
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 1.6e-100 370.5 402 48.0
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.0e-100 370.2 425 50.8
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.5e-100 369.4 404 52.7
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 4.9e-94 349.0 298 58.7
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 1.1e-90 337.8 271 62.4
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 5.4e-85 318.9 286 60.1
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 9.2e-85 318.2 272 59.6
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 1.5e-82 310.8 470 41.9
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 1.1e-77 294.7 386 42.7
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 7.8e-76 288.5 271 53.9
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 6.6e-75 285.4 435 39.1
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 8.7e-75 285.0 331 46.2
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.4e-72 277.7 267 53.2
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 3.1e-72 276.6 396 43.7
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 2.2e-70 270.4 180 68.3
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 4.5e-63 246.1 389 42.9
AUR62029644 Chenopodium quinoa HOM05D004497 ORTHO05D005539 8.4e-62 241.9 215 57.7
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.2e-60 238.0 181 69.6
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 2.2e-54 217.2 336 41.4
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 2.2e-54 217.2 336 41.4
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 1.0e-51 208.4 276 41.3
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 5.1e-51 206.1 127 74.0
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 7.9e-44 182.2 394 33.5
RcHm_v2.0_Chr5g0041021 Rosa chinensis HOM05D004497 ORTHO05D005539 3.0e-43 180.3 333 37.2
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 5.5e-37 159.5 206 43.7
AUR62025079 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.8e-35 154.5 294 37.8
TAR371G1248 Trochodendron aralioides HOM05D004497 ORTHO05D005539 5.1e-27 126.3 124 52.4
MCO03G018 Micromonas commoda HOM05D004497 ORTHO05D005539 8.5e-22 109.0 192 32.8
Cre17.g718650 Chlamydomonas reinhardtii HOM05D004497 ORTHO05D005539 4.2e-21 106.7 347 25.4
C04p39580 Brassica napus HOM05D004497 ORTHO05D005539 1.5e-18 98.2 87 57.5
BolC4t25523H Brassica oleracea HOM05D004497 ORTHO05D005539 1.5e-18 98.2 87 57.5
PRCOL_00003967 Prasinoderma coloniale HOM05D004497 ORTHO05D005539 9.7e-18 95.5 250 27.6
AUR62025092 Chenopodium quinoa HOM05D004497 ORTHO05D005539 7.0e-16 89.4 53 75.5
Phvul.003G017700 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 7.7e-15 85.9 74 59.5
Gohir.D13G181701 Gossypium hirsutum HOM05D004497 ORTHO05D005539 2.9e-14 84.0 81 53.1
Oeu006698.1 Olea europaea HOM05D004497 ORTHO05D005539 2.2e-06 57.8 75 45.3


User provided reference genes

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