Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv11093 Davidia involucrata HOM05D005145 ORTHO05D006062 3.3e-68 261.5 127 100.0
Dinv09339 Davidia involucrata HOM05D005145 ORTHO05D006062 3.4e-41 171.8 88 87.5
Dinv01450 Davidia involucrata HOM05D007544 ORTHO05D006062 1.3e-40 169.9 88 87.5
Actinidia31072 Actinidia chinensis HOM05D000961 ORTHO05D000841 6.4e-40 167.5 87 85.1
Eucgr.G03367 Eucalyptus grandis HOM05D005145 ORTHO05D006062 1.4e-39 166.4 88 84.1
Dinv09242 Davidia involucrata HOM05D007544 ORTHO05D009682 1.9e-39 166.0 88 85.2
GSVIVG01032135001 Vitis vinifera HOM05D005145 ORTHO05D006062 1.9e-39 166.0 88 84.1
Dinv22085 Davidia involucrata HOM05D007544 ORTHO05D006062 2.4e-39 165.6 88 85.2
TWI09G1580 Tripterygium wilfordii HOM05D005145 ORTHO05D006062 2.4e-39 165.6 88 85.2
MSTRG.17025 Avicennia marina HOM05D005145 ORTHO05D006062 3.2e-39 165.2 88 81.8
CSS0031676 Camellia sinensis var. sinensis HOM05D005145 ORTHO05D006062 4.2e-39 164.9 88 83.0
Duzib138G1043 Durio zibethinus HOM05D005145 ORTHO05D006062 5.4e-39 164.5 88 81.8
Gohir.A07G061000 Gossypium hirsutum HOM05D005145 ORTHO05D006062 5.4e-39 164.5 88 81.8
Gohir.D07G065700 Gossypium hirsutum HOM05D005145 ORTHO05D006062 5.4e-39 164.5 88 81.8
Gorai.001G069200 Gossypium raimondii HOM05D005145 ORTHO05D006062 5.4e-39 164.5 88 81.8
Manes.07G007200 Manihot esculenta HOM05D005145 ORTHO05D006062 5.4e-39 164.5 88 81.8
Sabra09G0043600 Salix brachista HOM05D005145 ORTHO05D006062 7.1e-39 164.1 88 80.7
TAR636G0099 Trochodendron aralioides HOM05D005145 ORTHO05D006062 7.1e-39 164.1 88 84.1
Actinidia19403 Actinidia chinensis HOM05D005145 ORTHO05D006062 9.3e-39 163.7 88 80.7
COL.COLO4_04870 Corchorus olitorius HOM05D005145 ORTHO05D006062 9.3e-39 163.7 88 81.8
Potri.001G264400 Populus trichocarpa HOM05D005145 ORTHO05D006062 9.3e-39 163.7 88 81.8
QL04p008103 Quercus lobata HOM05D005145 ORTHO05D006062 1.6e-38 162.9 88 84.1
QL04p008544 Quercus lobata HOM05D005145 ORTHO05D006062 1.6e-38 162.9 88 84.1
FvH4_7g01260 Fragaria vesca HOM05D005145 ORTHO05D006062 2.1e-38 162.5 88 80.7
FAN03G2501 Fragaria x ananassa HOM05D005145 ORTHO05D006062 2.1e-38 162.5 88 80.7
FAN06G2757 Fragaria x ananassa HOM05D005145 ORTHO05D006062 2.1e-38 162.5 88 80.7
RcHm_v2.0_Chr1g0317011 Rosa chinensis HOM05D005145 ORTHO05D006062 2.1e-38 162.5 88 80.7
Sabra16G0162500 Salix brachista HOM05D005145 ORTHO05D006062 2.1e-38 162.5 88 80.7
SalBow1G5123 Salvia bowleyana HOM05D005145 ORTHO05D006062 2.7e-38 162.2 88 80.7
Potri.009G059200 Populus trichocarpa HOM05D005145 ORTHO05D006062 4.6e-38 161.4 88 79.5
SGA_v2.0_scaffold4G02519 Striga asiatica HOM05D005145 ORTHO05D006062 4.6e-38 161.4 88 80.7
CANSAT35G1224 Cannabis sativa HOM05D005145 ORTHO05D006062 6.0e-38 161.0 89 78.7
Cpa.g.sc125.17 Carica papaya HOM05D005145 ORTHO05D006062 6.0e-38 161.0 88 78.4
Thecc.01G408700 Theobroma cacao HOM05D005145 ORTHO05D006062 6.0e-38 161.0 88 78.4
FAN01G2312 Fragaria x ananassa HOM05D005145 ORTHO05D006062 7.9e-38 160.6 88 79.5
FAN10G0323 Fragaria x ananassa HOM05D005145 ORTHO05D006062 7.9e-38 160.6 88 79.5
MD02G1308400 Malus domestica HOM05D005145 ORTHO05D006062 7.9e-38 160.6 88 80.7
CiPaw.13G006700 Carya illinoinensis HOM05D005145 ORTHO05D006062 1.0e-37 160.2 87 82.8
DCAR_029683 Daucus carota HOM05D005145 ORTHO05D006062 1.0e-37 160.2 88 80.7
Nitab4.5_0000707g0300 Nicotiana tabacum HOM05D005145 ORTHO05D006062 1.0e-37 160.2 86 82.6
Nitab4.5_0002918g0060 Nicotiana tabacum HOM05D005145 ORTHO05D006062 1.0e-37 160.2 86 82.6
Sc11g0009070 Simmondsia chinensis HOM05D005145 ORTHO05D006062 1.0e-37 160.2 88 80.7
Cc02_g28150 Coffea canephora HOM05D005145 ORTHO05D006062 1.3e-37 159.8 88 78.4
Peaxi162Scf00744g00356 Petunia axillaris HOM05D005145 ORTHO05D006062 1.8e-37 159.5 87 80.5
Sc23g0005930 Simmondsia chinensis HOM05D005145 ORTHO05D006062 1.8e-37 159.5 88 80.7
Ah.13g067830 Amaranthus hybridus HOM05D005145 ORTHO05D006062 2.3e-37 159.1 88 79.5
ClCG10G012290 Citrullus lanatus HOM05D005145 ORTHO05D006062 2.3e-37 159.1 88 78.4
CsaV3_3G032060 Cucumis sativus L. HOM05D005145 ORTHO05D006062 2.3e-37 159.1 88 78.4
Prupe.2G017100 Prunus persica HOM05D005145 ORTHO05D006062 2.3e-37 159.1 88 78.4
BcaC06g33022 Brassica carinata HOM05D005145 ORTHO05D006062 3.0e-37 158.7 88 76.1
BraA03t13968Z Brassica rapa HOM05D005145 ORTHO05D006062 3.0e-37 158.7 88 76.1
AUR62009396 Chenopodium quinoa HOM05D005145 ORTHO05D006062 3.0e-37 158.7 88 78.4
Dinv10758 Davidia involucrata HOM05D005145 ORTHO05D006062 3.0e-37 158.7 100 76.0
Lalb_Chr01g0000411 Lupinus albus HOM05D005145 ORTHO05D006062 3.0e-37 158.7 88 77.3
BcaB01g00448 Brassica carinata HOM05D005145 ORTHO05D006062 5.1e-37 157.9 88 76.1
BcaNung06088 Brassica carinata HOM05D005145 ORTHO05D006062 5.1e-37 157.9 88 76.1
C08p27330 Brassica napus HOM05D005145 ORTHO05D006062 5.1e-37 157.9 88 76.1
EL10Ac2g04343 Beta vulgaris HOM05D005145 ORTHO05D006062 6.7e-37 157.5 88 79.5
BcaC06g33379 Brassica carinata HOM05D005145 ORTHO05D006062 6.7e-37 157.5 88 75.0
BolC7t45194H Brassica oleracea HOM05D005145 ORTHO05D006062 6.7e-37 157.5 88 75.0
PGR083G1973 Punica granatum HOM05D005145 ORTHO05D006062 6.7e-37 157.5 88 78.4
Sed0001165 Sechium edule HOM05D005145 ORTHO05D006062 6.7e-37 157.5 88 77.3
BolC8t50350H Brassica oleracea HOM05D005145 ORTHO05D006062 8.7e-37 157.1 88 75.0
Sed0004407 Sechium edule HOM05D005145 ORTHO05D006062 8.7e-37 157.1 88 77.3
SGA_v2.0_scaffold69G23365 Striga asiatica HOM05D005145 ORTHO05D006062 8.7e-37 157.1 88 77.3
TAR369G0045 Trochodendron aralioides HOM05D005145 ORTHO05D006062 8.7e-37 157.1 88 79.5
vmacro13679 Vaccinium macrocarpon HOM05D005145 ORTHO05D006062 1.1e-36 156.8 88 79.5
Carub.0003s2169 Capsella rubella HOM05D005145 ORTHO05D006062 1.5e-36 156.4 88 75.0
Cfa010794 Carpinus fangiana HOM05D005145 ORTHO05D006062 1.5e-36 156.4 88 78.4
CiPaw.14G001300 Carya illinoinensis HOM05D005145 ORTHO05D006062 1.5e-36 156.4 88 80.7
Haze_03177 Corylus avellana HOM05D005145 ORTHO05D006062 1.5e-36 156.4 88 78.4
Migut.B01287 Erythranthe guttata HOM05D005145 ORTHO05D006062 1.5e-36 156.4 88 78.4
Sopen01g034400 Solanum pennellii HOM05D005145 ORTHO05D006062 1.5e-36 156.4 87 79.3
AT3G21640 Arabidopsis thaliana HOM05D005145 ORTHO05D006062 1.9e-36 156.0 88 73.9
CAN.G219.41 Capsicum annuum HOM05D005145 ORTHO05D006062 1.9e-36 156.0 87 79.3
Lsat_1_v5_gn_1_105761 Lactuca sativa HOM05D005145 ORTHO05D006062 5.6e-36 154.5 88 79.5
Psat7g183320 Pisum sativum HOM05D005145 ORTHO05D006062 5.6e-36 154.5 89 74.2
PGSC0003DMG400006860 Solanum tuberosum HOM05D005145 ORTHO05D006062 5.6e-36 154.5 87 78.2
AL3G35760 Arabidopsis lyrata HOM05D005145 ORTHO05D006062 7.4e-36 154.1 88 73.9
THA.LOC104801977 Tarenaya hassleriana HOM05D005145 ORTHO05D006062 7.4e-36 154.1 83 79.5
TPR.G30176 Trifolium pratense HOM05D005145 ORTHO05D006062 7.4e-36 154.1 89 74.2
Atru.chr11.2602 Acer truncatum HOM05D005145 ORTHO05D006062 9.6e-36 153.7 88 77.3
Nn7g36253 Nelumbo nucifera HOM05D005145 ORTHO05D006062 9.6e-36 153.7 88 76.1
Rhsim07G0056700 Rhododendron simsii HOM05D000961 ORTHO05D000841 9.6e-36 153.7 88 79.5
ATR0332G093 Amborella trichopoda HOM05D005145 ORTHO05D006062 1.6e-35 152.9 83 79.5
Lj3g0020185 Lotus japonicus HOM05D005145 ORTHO05D006062 1.6e-35 152.9 88 75.0
PSO478G3750 Papaver somniferum HOM05D005145 ORTHO05D006062 1.6e-35 152.9 88 76.1
PSO782G5523 Papaver somniferum HOM05D005145 ORTHO05D006062 1.6e-35 152.9 88 76.1
CDE05G1020 Ceratophyllum demersum HOM05D005145 ORTHO05D006062 2.1e-35 152.5 88 75.0
HanXRQChr10g0304331 Helianthus annuus HOM05D005145 ORTHO05D006062 2.1e-35 152.5 88 77.3
unitig_749.g14327 Utricularia gibba HOM05D005145 ORTHO05D006062 2.1e-35 152.5 88 77.3
VMungo1127G0627 Vigna mungo HOM05D005145 ORTHO05D006062 2.1e-35 152.5 88 72.7
ECA248G1413 Erigeron canadensis HOM05D005145 ORTHO05D006062 3.7e-35 151.8 88 76.1
Medtr4g039430 Medicago truncatula HOM05D005145 ORTHO05D006062 3.7e-35 151.8 89 73.0
arahy.Tifrunner.gnm1.ann1.TWX3XF Arachis hypogaea HOM05D005145 ORTHO05D006062 4.8e-35 151.4 88 72.7
MD02G1308300 Malus domestica HOM05D005145 ORTHO05D006062 4.8e-35 151.4 88 76.1
Phvul.011G012900 Phaseolus vulgaris HOM05D005145 ORTHO05D006062 4.8e-35 151.4 88 72.7
Oeu014585.1 Olea europaea HOM05D005145 ORTHO05D006062 6.2e-35 151.0 104 69.2
Aqoxy2G00161 Aquilegia oxysepala HOM05D005145 ORTHO05D006062 8.1e-35 150.6 88 72.7
Ca_19569_v3 Cicer arietinum L. HOM05D005145 ORTHO05D006062 8.1e-35 150.6 89 71.9
Ciclev10031893m.g Citrus clementina HOM05D005145 ORTHO05D006062 8.1e-35 150.6 88 73.9
Sp5g10230 Schrenkiella parvula HOM05D005145 ORTHO05D006062 8.1e-35 150.6 88 73.9
arahy.Tifrunner.gnm1.ann1.HLL15Q Arachis hypogaea HOM05D005145 ORTHO05D006062 1.1e-34 150.2 88 72.7
Hund05940 Selenicereus undatus HOM05D005145 ORTHO05D006062 1.1e-34 150.2 88 77.3
Zm00001eb092870 Zea mays HOM05D005145 ORTHO05D006062 1.4e-34 149.8 88 71.6
A09p45140 Brassica napus HOM05D005145 ORTHO05D006062 1.8e-34 149.4 100 68.0
BraA09t39975Z Brassica rapa HOM05D005145 ORTHO05D006062 1.8e-34 149.4 100 68.0
MBI15_g03642_MAGBIO Magnolia biondii HOM05D005145 ORTHO05D006062 1.8e-34 149.4 88 72.7
C07p46760 Brassica napus HOM05D005145 ORTHO05D006062 2.4e-34 149.1 100 67.0
Aa31LG10G7130 Aethionema arabicum HOM05D005145 ORTHO05D006062 3.1e-34 148.7 100 70.0
Glyma.12G008300 Glycine max HOM05D005145 ORTHO05D006062 4.0e-34 148.3 88 70.5
Os11g0148300 Oryza sativa ssp. japonica HOM05D005145 ORTHO05D006062 4.0e-34 148.3 88 71.6
Os12g0145500 Oryza sativa ssp. japonica HOM05D005145 ORTHO05D006062 6.9e-34 147.5 88 71.6
CARHR161760 Cardamine hirsuta HOM05D005145 ORTHO05D006062 9.0e-34 147.1 88 71.6
Glyma.09G228200 Glycine max HOM05D005145 ORTHO05D006062 9.0e-34 147.1 88 69.3
MD07G1017200 Malus domestica HOM05D005145 ORTHO05D006062 2.6e-33 145.6 88 76.1
HPP92_009711 Vanilla planifolia HOM05D005145 ORTHO05D006062 3.4e-33 145.2 88 71.6
A03p48650 Brassica napus HOM05D005145 ORTHO05D006062 1.3e-32 143.3 104 64.4
SEGI_24644 Sequoiadendron giganteum HOM05D005145 ORTHO05D006062 7.9e-30 134.0 80 71.2
Pp3c11_5900 Physcomitrium patens HOM05D005145 ORTHO05D006062 3.0e-29 132.1 88 65.9
AagrBONN_evm.TU.Sc2ySwM_117.2788 Anthoceros agrestis HOM05D005145 ORTHO05D006062 8.7e-29 130.6 88 64.8
SMO364G0452 Selaginella moellendorffii HOM05D005145 ORTHO05D006062 1.9e-28 129.4 88 64.8
Mapoly0068s0080 Marchantia polymorpha HOM05D005145 ORTHO05D006062 3.1e-26 122.1 88 60.2
Dinv00031 Davidia involucrata HOM05D007544 ORTHO05D009682 1.5e-25 119.8 61 88.5
Dinv43426 Davidia involucrata HOM05D005145 ORTHO05D006062 1.7e-24 116.3 70 77.1
Dinv18714 Davidia involucrata HOM05D007544 ORTHO05D006062 6.5e-24 114.4 66 81.8
Thhalv10010511m.g Eutrema salsugineum HOM05D005145 ORTHO05D006062 5.5e-23 111.3 66 74.2
Lj7C573G7 Lonicera japonica HOM05D005145 ORTHO05D006062 4.6e-22 108.2 73 71.2
MD07G1015600 Malus domestica HOM05D005145 ORTHO05D006062 4.3e-20 101.7 57 80.7
AUR62023079 Chenopodium quinoa HOM05D005145 ORTHO05D006062 1.6e-19 99.8 57 73.7
Duzib268G1834 Durio zibethinus HOM05D005145 ORTHO05D006062 1.6e-19 99.8 66 69.7
CBR_g66761 Chara braunii HOM05D005145 ORTHO05D006062 1.7e-16 89.7 83 49.4
Dinv30224 Davidia involucrata HOM05D007544 ORTHO05D006062 3.8e-16 88.6 46 87.0
Solyc01g087470.3 Solanum lycopersicum HOM05D005145 ORTHO05D006062 2.7e-14 82.4 46 78.3
MD07G1015900 Malus domestica HOM05D005145 ORTHO05D006062 4.3e-12 75.1 95 40.0
Cre02.g092250 Chlamydomonas reinhardtii HOM05D000371 ORTHO05D006062 3.8e-08 62.0 89 39.3
MCO12G401 Micromonas commoda HOM05D005145 ORTHO05D006062 4.2e-07 58.5 91 36.3
C03p33400 Brassica napus HOM05D005145 ORTHO05D006062 1.2e-06 57.0 28 89.3
BolC3t15662H Brassica oleracea HOM05D005145 ORTHO05D006062 1.2e-06 57.0 28 89.3
MBI18_g22302_MAGBIO Magnolia biondii HOM05D018728 ORTHO05D001955 2.1e-06 56.2 66 45.5
PSO596G0028 Papaver somniferum HOM05D000371 ORTHO05D001484 6.1e-06 54.7 83 33.7
PRCOL_00004628 Prasinoderma coloniale HOM05D001046 ORTHO05D002934 6.1e-06 54.7 75 41.3
PSO423G0151 Papaver somniferum HOM05D000371 ORTHO05D001484 7.9e-06 54.3 83 33.7


User provided reference genes

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