Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv11035 Davidia involucrata HOM05D007493 ORTHO05D009465 2.1e-41 171.8 77 100.0
Atru.BG.141.p Acer truncatum HOM05D007493 ORTHO05D009465 2.6e-12 75.1 35 97.1
Atru.chr2.2324 Acer truncatum HOM05D007493 ORTHO05D009465 2.6e-12 75.1 35 97.1
CSS0003793 Camellia sinensis var. sinensis HOM05D007493 ORTHO05D009465 2.6e-12 75.1 35 94.3
Atru.chr11.2184 Acer truncatum HOM05D007493 ORTHO05D009465 3.4e-12 74.7 35 94.3
Aqoxy5G03641 Aquilegia oxysepala HOM05D007493 ORTHO05D009465 3.4e-12 74.7 35 94.3
Hma1.2p1_0079F.1_g041210 Hydrangea macrophylla HOM05D007493 ORTHO05D009465 3.4e-12 74.7 35 94.3
Lj4g0017514 Lotus japonicus HOM05D007493 ORTHO05D009465 3.4e-12 74.7 35 94.3
MD06G1161100 Malus domestica HOM05D007493 ORTHO05D009465 3.4e-12 74.7 35 94.3
MD14G1166500 Malus domestica HOM05D007493 ORTHO05D009465 3.4e-12 74.7 35 94.3
Prupe.5G160800 Prunus persica HOM05D007493 ORTHO05D009465 3.4e-12 74.7 35 94.3
arahy.Tifrunner.gnm1.ann1.48Y6QT Arachis hypogaea HOM05D007493 ORTHO05D009465 5.9e-12 73.9 35 94.3
arahy.Tifrunner.gnm1.ann1.SE4B7G Arachis hypogaea HOM05D007493 ORTHO05D009465 5.9e-12 73.9 35 94.3
MBI10_g16722_MAGBIO Magnolia biondii HOM05D007493 ORTHO05D009465 5.9e-12 73.9 35 94.3
Nn3g16632 Nelumbo nucifera HOM05D007493 ORTHO05D009465 5.9e-12 73.9 35 94.3
COL.COLO4_23524 Corchorus olitorius HOM05D007493 ORTHO05D009465 7.7e-12 73.6 35 91.4
Duzib251G0942 Durio zibethinus HOM05D007493 ORTHO05D009465 7.7e-12 73.6 35 91.4
Manes.12G019900 Manihot esculenta HOM05D007493 ORTHO05D009465 7.7e-12 73.6 35 94.3
Manes.13G020200 Manihot esculenta HOM05D007493 ORTHO05D009465 7.7e-12 73.6 35 91.4
RcHm_v2.0_Chr7g0191781 Rosa chinensis HOM05D007493 ORTHO05D009465 7.7e-12 73.6 35 91.4
Thecc.02G266500 Theobroma cacao HOM05D007493 ORTHO05D009465 7.7e-12 73.6 35 91.4
Duzib248G1419 Durio zibethinus HOM05D007493 ORTHO05D009465 1.0e-11 73.2 35 91.4
PSO063G3855 Papaver somniferum HOM05D007493 ORTHO05D009465 1.0e-11 73.2 35 91.4
Glyma.05G172800 Glycine max HOM05D007493 ORTHO05D009465 1.3e-11 72.8 35 94.3
Glyma.08G130200 Glycine max HOM05D007493 ORTHO05D009465 1.3e-11 72.8 35 94.3
Lalb_Chr07g0185531 Lupinus albus HOM05D007493 ORTHO05D009465 1.7e-11 72.4 35 88.6
Nn4g22523 Nelumbo nucifera HOM05D007493 ORTHO05D009465 1.7e-11 72.4 35 91.4
TAR622G0701 Trochodendron aralioides HOM05D007493 ORTHO05D009465 2.2e-11 72.0 35 88.6
CANSAT01G0706 Cannabis sativa HOM05D007493 ORTHO05D009465 2.9e-11 71.6 35 88.6
Cfa009257 Carpinus fangiana HOM05D007493 ORTHO05D009465 2.9e-11 71.6 35 88.6
CiPaw.05G177500 Carya illinoinensis HOM05D007493 ORTHO05D009465 2.9e-11 71.6 35 88.6
Haze_12286 Corylus avellana HOM05D007493 ORTHO05D009465 2.9e-11 71.6 35 88.6
Os01g0908400 Oryza sativa ssp. japonica HOM05D007493 ORTHO05D009465 2.9e-11 71.6 35 88.6
Sc11g0000840 Simmondsia chinensis HOM05D007493 ORTHO05D009465 2.9e-11 71.6 35 91.4
Lalb_Chr12g0204101 Lupinus albus HOM05D007493 ORTHO05D009465 3.8e-11 71.2 35 85.7
PSO067G0033 Papaver somniferum HOM05D007493 ORTHO05D009465 3.8e-11 71.2 35 88.6
HPP92_009922 Vanilla planifolia HOM05D007493 ORTHO05D009465 3.8e-11 71.2 36 86.1
Cpa.g.sc33.74 Carica papaya HOM05D007493 ORTHO05D009465 5.0e-11 70.9 35 88.6
Zm00001eb365410 Zea mays HOM05D007493 ORTHO05D009465 6.5e-11 70.5 35 85.7
Manes.06G112900 Manihot esculenta HOM05D007493 ORTHO05D009465 8.5e-11 70.1 35 85.7
ClCG08G017580 Citrullus lanatus HOM05D007493 ORTHO05D009465 1.1e-10 69.7 35 88.6
MELO3C010701.2 Cucumis melo HOM05D007493 ORTHO05D009465 1.1e-10 69.7 35 88.6
CsaV3_2G025040 Cucumis sativus L. HOM05D007493 ORTHO05D009465 1.1e-10 69.7 35 88.6
Manes.14G056800 Manihot esculenta HOM05D007493 ORTHO05D009465 1.1e-10 69.7 35 85.7
Ciclev10033289m.g Citrus clementina HOM05D007493 ORTHO05D009465 1.4e-10 69.3 35 85.7
Medtr8g089640 Medicago truncatula HOM05D007493 ORTHO05D009465 1.4e-10 69.3 35 85.7
Nitab4.5_0000041g0060 Nicotiana tabacum HOM05D007493 ORTHO05D009465 1.4e-10 69.3 35 85.7
Nitab4.5_0013418g0010 Nicotiana tabacum HOM05D007493 ORTHO05D009465 1.4e-10 69.3 35 85.7
Peaxi162Scf00128g00547 Petunia axillaris HOM05D007493 ORTHO05D009465 1.4e-10 69.3 35 85.7
Gohir.A12G145600 Gossypium hirsutum HOM05D007493 ORTHO05D009465 1.9e-10 68.9 35 85.7
Gohir.D01G152700 Gossypium hirsutum HOM05D007493 ORTHO05D009465 1.9e-10 68.9 35 82.9
Gohir.D12G150200 Gossypium hirsutum HOM05D007493 ORTHO05D009465 1.9e-10 68.9 35 85.7
Gorai.002G189100 Gossypium raimondii HOM05D007493 ORTHO05D009465 1.9e-10 68.9 35 82.9
Gorai.008G161700 Gossypium raimondii HOM05D007493 ORTHO05D009465 1.9e-10 68.9 35 85.7
Migut.K00631 Erythranthe guttata HOM05D007493 ORTHO05D009465 2.5e-10 68.6 35 82.9
Aa31LG4G12320 Aethionema arabicum HOM05D007493 ORTHO05D009465 3.2e-10 68.2 35 85.7
Solyc05g013905.1 Solanum lycopersicum HOM05D007493 ORTHO05D009465 3.2e-10 68.2 35 82.9
PGSC0003DMG400010781 Solanum tuberosum HOM05D007493 ORTHO05D009465 3.2e-10 68.2 35 82.9
TWI18G0390 Tripterygium wilfordii HOM05D007493 ORTHO05D009465 3.2e-10 68.2 35 80.0
TWI36G0140 Tripterygium wilfordii HOM05D007493 ORTHO05D009465 3.2e-10 68.2 35 82.9
THA.LOC104825545 Tarenaya hassleriana HOM05D007493 ORTHO05D009465 4.2e-10 67.8 35 85.7
AL2G26520 Arabidopsis lyrata HOM05D007493 ORTHO05D009465 5.5e-10 67.4 35 85.7
AT1G67785 Arabidopsis thaliana HOM05D007493 ORTHO05D009465 5.5e-10 67.4 35 85.7
BcaB03g15163 Brassica carinata HOM05D007493 ORTHO05D009465 5.5e-10 67.4 35 85.7
BcaB05g24314 Brassica carinata HOM05D007493 ORTHO05D009465 5.5e-10 67.4 35 85.7
BcaC03g14872 Brassica carinata HOM05D007493 ORTHO05D009465 5.5e-10 67.4 35 85.7
BcaC08g46034 Brassica carinata HOM05D007493 ORTHO05D000035 5.5e-10 67.4 35 85.7
BcaC08g46204 Brassica carinata HOM05D001456 ORTHO05D009465 5.5e-10 67.4 35 85.7
A02p14480 Brassica napus HOM05D007493 ORTHO05D009465 5.5e-10 67.4 35 85.7
A07p32370 Brassica napus HOM05D007493 ORTHO05D009465 5.5e-10 67.4 35 85.7
C02p23440 Brassica napus HOM05D007493 ORTHO05D009465 5.5e-10 67.4 35 85.7
C06p38280 Brassica napus HOM05D007493 ORTHO05D009465 5.5e-10 67.4 35 85.7
C06p42230 Brassica napus HOM05D007493 ORTHO05D009465 5.5e-10 67.4 35 85.7
BolC2t08476H Brassica oleracea HOM05D007493 ORTHO05D009465 5.5e-10 67.4 35 85.7
BraA02t06512Z Brassica rapa HOM05D007493 ORTHO05D009465 5.5e-10 67.4 35 85.7
BraA07t30860Z Brassica rapa HOM05D007493 ORTHO05D009465 5.5e-10 67.4 35 85.7
BraA07t31062Z Brassica rapa HOM05D007493 ORTHO05D009465 5.5e-10 67.4 35 85.7
Carub.0002s1423 Capsella rubella HOM05D007493 ORTHO05D009465 5.5e-10 67.4 35 85.7
CARHR060410 Cardamine hirsuta HOM05D007493 ORTHO05D009465 5.5e-10 67.4 35 85.7
Thhalv10019416m.g Eutrema salsugineum HOM05D007493 ORTHO05D009465 5.5e-10 67.4 35 85.7
Sed0018590 Sechium edule HOM05D007493 ORTHO05D009465 7.2e-10 67.0 35 82.9
CSS0017909 Camellia sinensis var. sinensis HOM05D007493 ORTHO05D009465 9.4e-10 66.6 34 85.3
ATR0824G181 Amborella trichopoda HOM05D007493 ORTHO05D009465 1.2e-09 66.2 35 80.0
Phvul.002G252800 Phaseolus vulgaris HOM05D007493 ORTHO05D009465 1.2e-09 66.2 35 80.0
SalBow8G1793 Salvia bowleyana HOM05D007493 ORTHO05D009465 1.6e-09 65.9 35 77.1
HanXRQChr12g0385761 Helianthus annuus HOM05D007493 ORTHO05D009465 2.1e-09 65.5 35 77.1
Lsat_1_v5_gn_3_30001 Lactuca sativa HOM05D007493 ORTHO05D009465 2.1e-09 65.5 35 77.1
Lsat_1_v5_gn_4_3821 Lactuca sativa HOM05D007493 ORTHO05D009465 2.1e-09 65.5 35 77.1
Cc11_g16110 Coffea canephora HOM05D007493 ORTHO05D009465 3.6e-09 64.7 35 77.1
HanXRQChr17g0569621 Helianthus annuus HOM05D007493 ORTHO05D009465 3.6e-09 64.7 35 74.3
MD15G1332800 Malus domestica HOM05D007493 ORTHO05D009465 3.6e-09 64.7 38 78.9
PGSC0003DMG400007257 Solanum tuberosum HOM05D007493 ORTHO05D009465 3.6e-09 64.7 35 80.0
Potri.015G087301 Populus trichocarpa HOM05D007493 ORTHO05D009465 3.0e-08 61.6 35 77.1
PGR102G3362 Punica granatum HOM05D007493 ORTHO05D009465 3.0e-08 61.6 36 66.7
SHI26864 Sapria himalayana HOM05D007493 ORTHO05D009465 3.9e-08 61.2 35 74.3
MD03G1151700 Malus domestica HOM05D007493 ORTHO05D009465 5.1e-08 60.8 37 78.4
Sabra15G0110700 Salix brachista HOM05D000069 ORTHO05D000060 6.7e-08 60.5 38 71.1
MD07G1129300 Malus domestica HOM05D007493 ORTHO05D009465 8.8e-08 60.1 39 71.8
DCAR_026494 Daucus carota HOM05D007493 ORTHO05D009465 2.0e-07 58.9 35 68.6
PGR119G0352 Punica granatum HOM05D007493 ORTHO05D009465 2.6e-07 58.5 35 68.6
GSVIVG01000581001 Vitis vinifera HOM05D007493 ORTHO05D009465 6.3e-06 53.9 35 62.9


User provided reference genes

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