Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 2.3e-114 415.6 213 100.0
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 1.2e-99 366.7 196 94.9
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 2.1e-99 365.9 196 94.9
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 6.0e-99 364.4 196 94.4
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 6.0e-99 364.4 196 93.9
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 7.9e-99 364.0 196 93.9
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 1.3e-98 363.2 196 92.9
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 1.7e-98 362.8 196 93.4
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.7e-98 362.8 196 92.9
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 2.3e-98 362.5 196 93.4
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.3e-98 362.5 196 93.9
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 2.3e-98 362.5 196 92.3
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 2.3e-98 362.5 196 93.9
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 3.0e-98 362.1 196 92.9
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 3.0e-98 362.1 196 93.4
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 3.9e-98 361.7 196 93.4
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 6.6e-98 360.9 196 92.9
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 8.7e-98 360.5 196 93.4
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 8.7e-98 360.5 196 92.9
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 8.7e-98 360.5 196 93.4
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 8.7e-98 360.5 196 93.4
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 8.7e-98 360.5 196 92.9
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 8.7e-98 360.5 196 92.3
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 1.1e-97 360.1 196 92.9
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 1.1e-97 360.1 196 92.9
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.1e-97 360.1 196 92.3
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 1.9e-97 359.4 196 92.3
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 1.9e-97 359.4 196 92.3
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 1.9e-97 359.4 196 92.9
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 1.9e-97 359.4 196 92.3
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 2.5e-97 359.0 196 92.3
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 2.5e-97 359.0 196 92.3
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.5e-97 359.0 196 92.3
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 2.5e-97 359.0 196 92.9
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 3.3e-97 358.6 196 92.3
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 3.3e-97 358.6 196 92.3
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 3.3e-97 358.6 196 91.8
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 3.3e-97 358.6 200 92.0
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 4.3e-97 358.2 196 91.8
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 4.3e-97 358.2 196 91.8
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 4.3e-97 358.2 196 91.3
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 5.6e-97 357.8 196 91.8
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 5.6e-97 357.8 196 91.8
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 7.3e-97 357.5 196 91.3
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 7.3e-97 357.5 196 91.8
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 7.3e-97 357.5 196 92.3
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 9.6e-97 357.1 196 91.8
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 9.6e-97 357.1 196 91.8
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 9.6e-97 357.1 196 91.8
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 1.3e-96 356.7 196 91.3
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 2.1e-96 355.9 196 92.3
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 2.1e-96 355.9 196 91.8
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 2.8e-96 355.5 195 91.8
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 3.6e-96 355.1 196 91.3
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 3.6e-96 355.1 196 91.8
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 4.8e-96 354.8 196 91.8
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 6.2e-96 354.4 196 90.3
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 6.2e-96 354.4 196 90.3
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 6.2e-96 354.4 196 91.3
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 8.1e-96 354.0 195 91.3
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 1.1e-95 353.6 196 91.8
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 1.1e-95 353.6 196 90.3
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 1.8e-95 352.8 196 90.3
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 2.4e-95 352.4 196 90.8
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 2.4e-95 352.4 196 90.8
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 2.4e-95 352.4 196 90.8
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 3.1e-95 352.1 196 90.3
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 6.9e-95 350.9 206 87.9
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 9.0e-95 350.5 196 89.3
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 9.0e-95 350.5 196 89.8
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.2e-94 350.1 196 91.3
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 1.2e-94 350.1 196 89.8
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 1.5e-94 349.7 196 90.8
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 2.6e-94 349.0 201 89.1
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 4.5e-94 348.2 196 88.3
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 1.3e-93 346.7 196 88.8
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 2.2e-93 345.9 196 88.3
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 2.9e-93 345.5 196 89.8
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 3.8e-93 345.1 196 90.8
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 6.4e-93 344.4 196 87.8
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 6.4e-93 344.4 197 88.8
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 8.4e-93 344.0 195 87.7
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 2.4e-92 342.4 197 88.3
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 2.4e-92 342.4 197 88.3
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 7.1e-92 340.9 197 87.8
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 7.1e-92 340.9 196 87.8
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 7.1e-92 340.9 197 87.8
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 1.2e-91 340.1 197 87.8
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 1.2e-91 340.1 197 87.8
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 2.7e-91 339.0 196 90.3
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 3.5e-91 338.6 197 87.3
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 1.0e-90 337.0 197 86.3
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 1.8e-90 336.3 197 86.3
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 1.5e-89 333.2 196 84.7
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 2.5e-89 332.4 196 87.8
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 5.6e-89 331.3 196 82.7
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 5.6e-89 331.3 196 82.1
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 4.8e-88 328.2 195 86.7
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 4.8e-88 328.2 195 86.7
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.8e-87 326.2 195 86.2
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 3.4e-86 322.0 197 83.8
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.7e-85 319.7 195 84.1
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 3.2e-84 315.5 190 84.2
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 2.1e-83 312.8 196 84.2
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 6.0e-83 311.2 167 92.8
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 7.9e-83 310.8 166 92.8
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 3.0e-82 308.9 167 91.6
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 1.9e-81 306.2 167 92.2
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 4.3e-81 305.1 196 81.1
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 4.8e-80 301.6 167 88.6
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 6.9e-79 297.7 166 88.0
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 6.9e-79 297.7 196 81.1
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 9.0e-79 297.4 196 74.0
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 4.5e-78 295.0 196 79.6
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 5.0e-77 291.6 167 86.2
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 5.1e-74 281.6 196 75.0
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 8.5e-69 264.2 144 91.7
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 1.4e-68 263.5 196 71.9
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 9.4e-68 260.8 144 91.0
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 6.7e-66 254.6 196 63.8
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 2.0e-65 253.1 196 62.8
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 6.3e-64 248.1 201 69.7
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 1.1e-63 247.3 193 61.1
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 2.9e-61 239.2 191 61.8
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 5.0e-61 238.4 196 67.3
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 2.8e-56 222.6 133 86.5
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 8.2e-56 221.1 186 56.5
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 3.1e-55 219.2 123 91.1
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 1.6e-51 206.8 197 53.3
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 2.3e-50 203.0 207 53.6
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 5.2e-50 201.8 108 92.6
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 9.1e-47 191.0 139 74.8
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 7.7e-46 188.0 138 72.5
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 1.3e-45 187.2 190 47.4
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 1.5e-44 183.7 197 56.3
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 4.2e-44 182.2 189 46.6
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 4.4e-41 172.2 98 86.7
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 2.2e-40 169.9 216 43.5
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 4.1e-39 165.6 156 62.2
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 5.0e-37 158.7 196 51.5
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 2.4e-31 139.8 187 39.0
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 4.5e-30 135.6 74 90.5
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 5.0e-29 132.1 196 45.9
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 5.6e-28 128.6 92 73.9
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.2e-27 127.5 83 75.9
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 5.7e-25 118.6 84 77.4
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 7.0e-23 111.7 73 80.8
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 1.2e-22 110.9 122 53.3
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 3.5e-22 109.4 82 72.0
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 6.6e-21 105.1 60 86.7
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 1.0e-18 97.8 48 91.7
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 4.4e-17 92.4 72 68.1
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 8.1e-11 71.6 62 67.7
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 2.2e-08 63.5 39 74.4
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.9e-07 60.5 38 71.1
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 3.2e-07 59.7 69 56.5
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 3.5e-06 56.2 137 25.5


User provided reference genes

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