Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 3.0e-78 295.4 184 100.0
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 2.2e-41 172.9 109 79.8
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 3.8e-41 172.2 108 79.6
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 8.4e-41 171.0 108 77.8
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 8.4e-41 171.0 108 78.7
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 9.3e-40 167.5 108 75.9
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 2.1e-39 166.4 107 76.6
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 3.9e-38 162.2 108 76.9
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 8.7e-38 161.0 108 72.2
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 1.1e-37 160.6 108 74.1
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 1.5e-37 160.2 108 72.2
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 1.9e-37 159.8 108 72.2
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 7.4e-37 157.9 108 69.4
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 9.6e-37 157.5 108 71.3
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 9.6e-37 157.5 108 70.4
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 2.1e-36 156.4 110 69.1
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 2.8e-36 156.0 113 70.8
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 3.7e-36 155.6 113 67.3
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 4.8e-36 155.2 112 68.8
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 6.2e-36 154.8 108 75.9
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 1.1e-35 154.1 108 70.4
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 1.4e-35 153.7 108 70.4
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 5.3e-35 151.8 108 70.4
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 9.0e-35 151.0 110 67.3
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 9.0e-35 151.0 108 69.4
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 1.2e-34 150.6 110 67.3
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 1.2e-34 150.6 108 67.6
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 2.0e-34 149.8 108 69.4
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 2.0e-34 149.8 108 68.5
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 2.6e-34 149.4 110 66.4
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 3.4e-34 149.1 108 65.7
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 3.4e-34 149.1 108 67.6
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 4.5e-34 148.7 109 64.2
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 4.5e-34 148.7 108 71.3
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 4.5e-34 148.7 108 68.5
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 5.8e-34 148.3 108 66.7
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 5.8e-34 148.3 109 63.3
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 5.8e-34 148.3 108 66.7
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 5.8e-34 148.3 108 66.7
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 7.6e-34 147.9 108 71.3
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 1.0e-33 147.5 104 73.1
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 1.3e-33 147.1 109 68.8
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 1.7e-33 146.7 108 68.5
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 1.7e-33 146.7 108 68.5
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 1.7e-33 146.7 109 66.1
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.7e-33 146.7 108 66.7
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 2.2e-33 146.4 108 67.6
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 2.2e-33 146.4 115 62.6
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 2.9e-33 146.0 109 70.6
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 3.8e-33 145.6 108 68.5
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 3.8e-33 145.6 108 66.7
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 5.0e-33 145.2 108 65.7
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 5.0e-33 145.2 108 65.7
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 6.5e-33 144.8 108 63.9
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 6.5e-33 144.8 108 67.6
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 6.5e-33 144.8 108 64.8
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 8.4e-33 144.4 108 64.8
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 8.4e-33 144.4 108 68.5
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 8.4e-33 144.4 108 66.7
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 1.1e-32 144.1 109 64.2
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 3.2e-32 142.5 108 63.9
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 3.2e-32 142.5 109 64.2
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 4.2e-32 142.1 108 63.9
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 4.2e-32 142.1 108 64.8
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 4.2e-32 142.1 108 63.9
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 4.2e-32 142.1 108 63.9
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 4.2e-32 142.1 109 63.3
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 5.5e-32 141.7 108 64.8
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 5.5e-32 141.7 108 63.9
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 9.3e-32 141.0 108 63.9
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 9.3e-32 141.0 110 63.6
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 9.3e-32 141.0 108 67.6
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 9.3e-32 141.0 108 67.6
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 9.3e-32 141.0 108 67.6
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 9.3e-32 141.0 109 67.9
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 9.3e-32 141.0 108 62.0
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 1.6e-31 140.2 108 62.0
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 1.6e-31 140.2 108 63.9
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 2.7e-31 139.4 109 60.6
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 2.7e-31 139.4 108 61.1
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 3.5e-31 139.0 109 63.3
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 4.6e-31 138.7 109 63.3
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 6.1e-31 138.3 110 62.7
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 6.1e-31 138.3 109 65.1
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 7.9e-31 137.9 108 63.0
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.0e-30 137.5 108 64.8
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 1.3e-30 137.1 108 60.2
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 1.3e-30 137.1 109 65.1
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 1.3e-30 137.1 108 65.7
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 2.3e-30 136.3 109 65.1
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 2.3e-30 136.3 108 63.9
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 3.0e-30 136.0 109 62.4
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 3.9e-30 135.6 109 62.4
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 6.7e-30 134.8 109 61.5
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 6.7e-30 134.8 108 63.0
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 6.7e-30 134.8 109 62.4
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 8.7e-30 134.4 108 62.0
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 1.9e-29 133.3 108 63.0
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 1.9e-29 133.3 108 62.0
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 3.3e-29 132.5 108 63.9
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 4.3e-29 132.1 108 62.0
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 4.3e-29 132.1 107 61.7
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 7.4e-29 131.3 108 59.3
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 7.4e-29 131.3 108 61.1
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 1.3e-28 130.6 109 59.6
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 1.6e-28 130.2 112 61.6
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 1.6e-28 130.2 108 53.7
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 3.7e-28 129.0 108 61.1
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 4.8e-28 128.6 108 60.2
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 1.1e-27 127.5 104 59.6
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 3.1e-27 125.9 100 63.0
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 4.1e-27 125.6 108 58.3
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 9.0e-27 124.4 100 64.0
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 1.5e-26 123.6 88 70.5
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 2.0e-26 123.2 108 51.9
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 2.0e-26 123.2 88 70.5
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 4.5e-26 122.1 97 62.9
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 2.2e-25 119.8 112 58.0
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 2.2e-25 119.8 108 52.8
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 2.9e-25 119.4 86 69.8
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 5.0e-25 118.6 108 51.9
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 6.5e-25 118.2 85 69.4
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 8.5e-25 117.9 87 69.0
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 1.1e-24 117.5 90 66.7
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.4e-24 117.1 85 69.4
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 2.5e-24 116.3 86 68.6
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 7.2e-24 114.8 91 62.6
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 2.1e-23 113.2 94 60.6
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 2.7e-23 112.8 88 67.0
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 7.9e-23 111.3 87 65.5
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 1.0e-22 110.9 86 62.8
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.0e-22 110.9 108 56.5
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 1.4e-22 110.5 92 62.0
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 1.4e-22 110.5 87 63.2
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 1.8e-22 110.2 94 62.8
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 2.3e-22 109.8 87 62.1
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 2.3e-22 109.8 112 54.5
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 5.1e-22 108.6 87 64.4
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 5.1e-22 108.6 87 64.4
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.5e-21 107.1 87 63.2
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 7.4e-21 104.8 87 59.8
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 1.8e-19 100.1 110 46.4
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 1.2e-18 97.4 113 45.1
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 2.0e-18 96.7 106 41.5
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 1.3e-17 94.0 86 51.2
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 3.8e-17 92.4 108 42.6
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 1.4e-16 90.5 66 66.7
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 3.2e-16 89.4 83 57.8
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 7.2e-16 88.2 77 59.7
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 9.4e-16 87.8 94 50.0
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 3.3e-13 79.3 83 50.6
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 2.8e-12 76.3 109 37.6
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 2.8e-12 76.3 88 51.1
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 3.7e-12 75.9 110 38.2
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 8.2e-12 74.7 58 62.1
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 6.5e-09 65.1 109 35.8
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 8.0e-07 58.2 65 41.5
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 8.0e-07 58.2 65 41.5
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 5.2e-06 55.5 77 41.6


User provided reference genes

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