Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 7.4e-59 230.3 116 100.0
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 3.9e-28 128.3 73 89.0
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 1.1e-27 126.7 73 86.3
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 1.1e-27 126.7 73 86.3
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 1.5e-27 126.3 73 84.9
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 1.5e-27 126.3 73 84.9
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.5e-27 126.3 73 84.9
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.5e-27 126.3 73 84.9
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 1.5e-27 126.3 73 84.9
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 1.5e-27 126.3 73 84.9
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.5e-27 126.3 73 84.9
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.5e-27 126.3 73 84.9
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.5e-27 126.3 73 84.9
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 1.5e-27 126.3 73 84.9
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 1.5e-27 126.3 73 84.9
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 1.5e-27 126.3 73 84.9
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 1.5e-27 126.3 73 84.9
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 1.5e-27 126.3 73 84.9
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 1.5e-27 126.3 73 84.9
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 1.5e-27 126.3 73 84.9
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 2.0e-27 125.9 73 83.6
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 2.0e-27 125.9 73 83.6
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 2.0e-27 125.9 73 83.6
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 3.3e-27 125.2 73 83.6
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 3.3e-27 125.2 73 83.6
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 3.3e-27 125.2 73 83.6
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 3.3e-27 125.2 73 83.6
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 4.4e-27 124.8 73 83.6
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 4.4e-27 124.8 72 84.7
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 4.4e-27 124.8 73 83.6
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 5.7e-27 124.4 73 83.6
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 5.7e-27 124.4 73 83.6
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 5.7e-27 124.4 73 82.2
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 5.7e-27 124.4 73 83.6
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 5.7e-27 124.4 73 82.2
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 5.7e-27 124.4 73 82.2
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 5.7e-27 124.4 73 82.2
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 5.7e-27 124.4 73 82.2
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 5.7e-27 124.4 73 82.2
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 7.4e-27 124.0 73 83.6
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 7.4e-27 124.0 118 61.0
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 7.4e-27 124.0 73 83.6
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 7.4e-27 124.0 73 83.6
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 7.4e-27 124.0 73 82.2
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 9.7e-27 123.6 122 54.9
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 9.7e-27 123.6 73 80.8
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 9.7e-27 123.6 73 82.2
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 9.7e-27 123.6 73 82.2
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 1.3e-26 123.2 113 57.5
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 1.3e-26 123.2 72 83.3
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.3e-26 123.2 73 79.5
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 1.3e-26 123.2 73 82.2
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 1.7e-26 122.9 103 66.0
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.7e-26 122.9 73 80.8
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 1.7e-26 122.9 73 80.8
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 1.7e-26 122.9 73 80.8
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 1.7e-26 122.9 73 80.8
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 2.2e-26 122.5 72 81.9
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 2.2e-26 122.5 72 79.2
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 2.2e-26 122.5 73 80.8
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 2.2e-26 122.5 73 82.2
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 2.2e-26 122.5 72 81.9
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 2.2e-26 122.5 72 81.9
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 2.2e-26 122.5 73 79.5
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 2.8e-26 122.1 72 80.6
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 2.8e-26 122.1 72 80.6
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 2.8e-26 122.1 72 81.9
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 2.8e-26 122.1 72 83.3
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 2.8e-26 122.1 72 83.3
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 3.7e-26 121.7 103 65.0
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 3.7e-26 121.7 73 80.8
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 4.8e-26 121.3 72 77.8
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 4.8e-26 121.3 73 80.8
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 4.8e-26 121.3 72 80.6
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 4.8e-26 121.3 73 80.8
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 6.3e-26 120.9 72 79.2
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 6.3e-26 120.9 72 79.2
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 6.3e-26 120.9 72 79.2
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 6.3e-26 120.9 72 79.2
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 6.3e-26 120.9 72 79.2
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 6.3e-26 120.9 72 79.2
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 6.3e-26 120.9 72 79.2
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 6.3e-26 120.9 72 79.2
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 6.3e-26 120.9 72 79.2
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 6.3e-26 120.9 72 79.2
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 6.3e-26 120.9 72 79.2
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 6.3e-26 120.9 72 79.2
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 6.3e-26 120.9 72 79.2
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 6.3e-26 120.9 72 79.2
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 6.3e-26 120.9 72 79.2
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 6.3e-26 120.9 73 79.5
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 8.2e-26 120.6 73 80.8
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 8.2e-26 120.6 73 80.8
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 8.2e-26 120.6 73 80.8
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 8.2e-26 120.6 72 77.8
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 8.2e-26 120.6 72 77.8
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 8.2e-26 120.6 73 80.8
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 8.2e-26 120.6 73 80.8
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 8.2e-26 120.6 73 80.8
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 8.2e-26 120.6 73 80.8
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 8.2e-26 120.6 73 80.8
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 8.2e-26 120.6 73 80.8
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 8.2e-26 120.6 73 80.8
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 8.2e-26 120.6 73 80.8
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 1.1e-25 120.2 73 79.5
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 1.1e-25 120.2 73 79.5
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 1.4e-25 119.8 73 82.2
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 1.4e-25 119.8 72 77.8
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 1.4e-25 119.8 73 82.2
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 1.8e-25 119.4 75 80.0
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.8e-25 119.4 75 80.0
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.8e-25 119.4 75 80.0
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.8e-25 119.4 75 80.0
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.8e-25 119.4 75 80.0
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 1.8e-25 119.4 72 79.2
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 1.8e-25 119.4 72 79.2
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.4e-25 119.0 76 78.9
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 2.4e-25 119.0 73 80.8
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 3.1e-25 118.6 73 78.1
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 3.1e-25 118.6 73 75.3
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 4.1e-25 118.2 72 79.2
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 4.1e-25 118.2 72 79.2
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 4.1e-25 118.2 72 79.2
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 4.1e-25 118.2 73 79.5
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 5.3e-25 117.9 72 79.2
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 1.6e-24 116.3 72 75.0
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 1.6e-24 116.3 99 63.6
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 2.0e-24 115.9 72 73.6
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 5.0e-23 111.3 72 75.0
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 8.5e-23 110.5 75 73.3
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 1.1e-22 110.2 75 72.0
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 4.2e-22 108.2 75 70.7
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 7.2e-22 107.5 75 69.3
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 9.4e-22 107.1 64 81.2
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 4.7e-21 104.8 75 69.3
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 6.1e-21 104.4 75 69.3
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 6.1e-21 104.4 75 68.0
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 8.3e-18 94.0 77 57.1
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 2.4e-17 92.4 76 60.5
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 1.2e-16 90.1 76 61.8
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 1.2e-16 90.1 73 58.9
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 8.0e-13 77.4 83 53.0
Dinv17226 Davidia involucrata HOM05D001165 ORTHO05D185677 8.0e-13 77.4 42 90.5
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 9.8e-11 70.5 51 68.6
Dinv13422 Davidia involucrata HOM05D001165 ORTHO05D001347 6.3e-10 67.8 34 97.1
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 1.4e-09 66.6 36 86.1
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 1.4e-09 66.6 34 91.2
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 5.0e-07 58.2 44 61.4
Actinidia16271 Actinidia chinensis HOM05D001165 ORTHO05D001347 8.6e-07 57.4 34 73.5
CSS0038763 Camellia sinensis var. sinensis HOM05D001165 ORTHO05D001347 8.6e-07 57.4 35 71.4
Dinv10846 Davidia involucrata HOM05D000246 ORTHO05D180737 3.3e-06 55.5 31 90.3
Actinidia06857 Actinidia chinensis HOM05D001165 ORTHO05D001347 7.2e-06 54.3 34 70.6


User provided reference genes

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