Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv10667 Davidia involucrata HOM05D003031 ORTHO05D003371 1.3e-78 296.2 139 100.0
Cfa019280 Carpinus fangiana HOM05D001252 ORTHO05D003371 9.6e-21 104.0 53 90.6
TWI60G0174 Tripterygium wilfordii HOM05D003031 ORTHO05D003371 6.2e-20 101.3 53 88.7
Dinv44900 Davidia involucrata HOM05D004741 ORTHO05D005454 1.4e-19 100.1 52 88.5
QL10p017973 Quercus lobata HOM05D003031 ORTHO05D003371 1.4e-19 100.1 52 86.5
GSVIVG01007955001 Vitis vinifera HOM05D003031 ORTHO05D003371 1.4e-19 100.1 53 88.7
Hma1.2p1_0322F.1_g124980 Hydrangea macrophylla HOM05D003031 ORTHO05D003371 5.2e-19 98.2 53 84.9
Rhsim12G0153500 Rhododendron simsii HOM05D003031 ORTHO05D003371 6.8e-19 97.8 53 86.8
MSTRG.22993 Avicennia marina HOM05D003031 ORTHO05D003371 8.9e-19 97.4 52 84.6
Actinidia19015 Actinidia chinensis HOM05D003031 ORTHO05D003371 2.6e-18 95.9 51 84.3
Duzib205G0885 Durio zibethinus HOM05D003031 ORTHO05D003371 2.6e-18 95.9 53 83.0
PGR083G0559 Punica granatum HOM05D003031 ORTHO05D003371 2.6e-18 95.9 53 83.0
vmacro16521 Vaccinium macrocarpon HOM05D003031 ORTHO05D003371 2.6e-18 95.9 52 82.7
CSS0035239 Camellia sinensis var. sinensis HOM05D003031 ORTHO05D003371 3.4e-18 95.5 51 84.3
COL.COLO4_35582 Corchorus olitorius HOM05D003031 ORTHO05D003371 3.4e-18 95.5 51 84.3
Gohir.D12G182400 Gossypium hirsutum HOM05D003031 ORTHO05D003371 3.4e-18 95.5 53 81.1
Gorai.008G195700 Gossypium raimondii HOM05D003031 ORTHO05D003371 3.4e-18 95.5 53 81.1
ClCG06G015940 Citrullus lanatus HOM05D003031 ORTHO05D003371 4.4e-18 95.1 53 79.2
Ciclev10022490m.g Citrus clementina HOM05D003031 ORTHO05D003371 4.4e-18 95.1 53 83.0
Os10g0335200 Oryza sativa ssp. japonica HOM05D003031 ORTHO05D003371 4.4e-18 95.1 51 84.3
Manes.06G088700 Manihot esculenta HOM05D003031 ORTHO05D003371 5.8e-18 94.7 53 83.0
Sabra12G0047700 Salix brachista HOM05D003031 ORTHO05D003371 7.6e-18 94.4 53 81.1
Sc10g0009810 Simmondsia chinensis HOM05D003031 ORTHO05D003371 7.6e-18 94.4 51 80.4
Cpa.g.sc13.303 Carica papaya HOM05D003031 ORTHO05D003371 9.9e-18 94.0 51 82.4
Gohir.A12G179800 Gossypium hirsutum HOM05D003031 ORTHO05D003371 9.9e-18 94.0 53 79.2
Nn7g37963 Nelumbo nucifera HOM05D003031 ORTHO05D003371 9.9e-18 94.0 52 80.8
Nitab4.5_0008485g0020 Nicotiana tabacum HOM05D003031 ORTHO05D003371 9.9e-18 94.0 53 83.0
Thecc.03G095000 Theobroma cacao HOM05D003031 ORTHO05D003371 9.9e-18 94.0 52 82.7
CsaV3_1G002610 Cucumis sativus L. HOM05D003031 ORTHO05D003371 1.3e-17 93.6 50 82.0
Potri.012G067700 Populus trichocarpa HOM05D003031 ORTHO05D003371 1.7e-17 93.2 53 81.1
FvH4_5g14460 Fragaria vesca HOM05D003031 ORTHO05D003371 2.9e-17 92.4 53 81.1
FAN08G0457 Fragaria x ananassa HOM05D003031 ORTHO05D003371 2.9e-17 92.4 53 81.1
FAN18G0620 Fragaria x ananassa HOM05D003031 ORTHO05D003371 2.9e-17 92.4 53 81.1
CAN.G370.13 Capsicum annuum HOM05D003031 ORTHO05D003371 3.8e-17 92.0 53 81.1
RcHm_v2.0_Chr7g0182201 Rosa chinensis HOM05D003031 ORTHO05D003371 3.8e-17 92.0 53 79.2
Cc04_g14320 Coffea canephora HOM05D003031 ORTHO05D003371 4.9e-17 91.7 46 91.3
SGA_v2.0_scaffold313G48319 Striga asiatica HOM05D003031 ORTHO05D003371 4.9e-17 91.7 51 82.4
Oeu031810.1 Olea europaea HOM05D003031 ORTHO05D003371 6.4e-17 91.3 46 89.1
DCAR_026032 Daucus carota HOM05D003031 ORTHO05D003371 8.4e-17 90.9 49 81.6
MBI05_g02666_MAGBIO Magnolia biondii HOM05D003031 ORTHO05D003371 8.4e-17 90.9 51 78.4
Aqoxy3G03516 Aquilegia oxysepala HOM05D003031 ORTHO05D003371 1.1e-16 90.5 47 87.2
arahy.Tifrunner.gnm1.ann1.0SW4QZ Arachis hypogaea HOM05D003031 ORTHO05D003371 1.1e-16 90.5 46 89.1
arahy.Tifrunner.gnm1.ann1.W106X3 Arachis hypogaea HOM05D003031 ORTHO05D003371 1.1e-16 90.5 46 89.1
Peaxi162Scf00106g00517 Petunia axillaris HOM05D003031 ORTHO05D003371 1.1e-16 90.5 51 80.4
PGSC0003DMG400015000 Solanum tuberosum HOM05D003031 ORTHO05D003371 1.1e-16 90.5 53 77.4
Ah.02g113830 Amaranthus hybridus HOM05D003031 ORTHO05D003371 1.4e-16 90.1 51 74.5
Prupe.5G199100 Prunus persica HOM05D003031 ORTHO05D003371 1.4e-16 90.1 46 89.1
Hund02619 Selenicereus undatus HOM05D003031 ORTHO05D003371 1.4e-16 90.1 53 77.4
Eucgr.B00552 Eucalyptus grandis HOM05D003031 ORTHO05D003371 1.9e-16 89.7 53 77.4
Solyc12g036250.2 Solanum lycopersicum HOM05D003031 ORTHO05D003371 1.9e-16 89.7 52 78.8
EL10Ac5g11072 Beta vulgaris HOM05D003031 ORTHO05D003371 2.4e-16 89.4 51 76.5
AUR62008472 Chenopodium quinoa HOM05D003031 ORTHO05D003371 2.4e-16 89.4 51 74.5
AUR62021620 Chenopodium quinoa HOM05D003031 ORTHO05D003371 2.4e-16 89.4 51 74.5
ECA246G4182 Erigeron canadensis HOM05D000403 ORTHO05D000350 2.4e-16 89.4 46 84.8
Lj5A107T96 Lonicera japonica HOM05D003031 ORTHO05D003371 3.2e-16 89.0 57 75.4
MD14G1205900 Malus domestica HOM05D003031 ORTHO05D003371 4.2e-16 88.6 46 87.0
Nitab4.5_0001997g0010 Nicotiana tabacum HOM05D003031 ORTHO05D003371 4.2e-16 88.6 46 84.8
Sopen12g016470 Solanum pennellii HOM05D003031 ORTHO05D003371 4.2e-16 88.6 53 75.5
TAR374G1100 Trochodendron aralioides HOM05D003031 ORTHO05D003371 5.4e-16 88.2 49 79.6
CDE02G1609 Ceratophyllum demersum HOM05D003031 ORTHO05D003371 7.1e-16 87.8 47 83.0
Migut.I00223 Erythranthe guttata HOM05D003031 ORTHO05D003371 7.1e-16 87.8 52 75.0
Atru.chr9.307 Acer truncatum HOM05D003031 ORTHO05D003371 1.2e-15 87.0 46 84.8
Duzib068G0828 Durio zibethinus HOM05D003031 ORTHO05D003371 1.6e-15 86.7 51 78.4
Lj4g0026736 Lotus japonicus HOM05D003031 ORTHO05D003371 1.6e-15 86.7 46 84.8
CANSAT80G2319 Cannabis sativa HOM05D003031 ORTHO05D003371 2.1e-15 86.3 51 70.6
TAR629G1820 Trochodendron aralioides HOM05D003031 ORTHO05D003371 2.1e-15 86.3 45 84.4
unitig_750.g28508 Utricularia gibba HOM05D003031 ORTHO05D003371 2.1e-15 86.3 74 58.1
Lalb_Chr13g0303041 Lupinus albus HOM05D003031 ORTHO05D003371 3.5e-15 85.5 46 84.8
THA.LOC104812097 Tarenaya hassleriana HOM05D003031 ORTHO05D003371 3.5e-15 85.5 46 80.4
Zm00001eb224060 Zea mays HOM05D003031 ORTHO05D003371 3.5e-15 85.5 51 76.5
Aa31LG7G3440 Aethionema arabicum HOM05D003031 ORTHO05D003371 4.6e-15 85.1 47 74.5
Glyma.05G024300 Glycine max HOM05D003031 ORTHO05D003371 4.6e-15 85.1 69 62.3
Medtr4g109110 Medicago truncatula HOM05D003031 ORTHO05D003371 6.0e-15 84.7 69 60.9
SHI22818 Sapria himalayana HOM05D003031 ORTHO05D003371 6.0e-15 84.7 51 74.5
TPR.G2033 Trifolium pratense HOM05D003031 ORTHO05D003371 6.0e-15 84.7 46 80.4
HanXRQChr15g0481621 Helianthus annuus HOM05D003031 ORTHO05D003371 7.8e-15 84.3 46 76.1
Ca_21802_v3 Cicer arietinum L. HOM05D003031 ORTHO05D003371 1.0e-14 84.0 69 59.4
CARHR019310 Cardamine hirsuta HOM05D003031 ORTHO05D003371 1.7e-14 83.2 47 74.5
Thhalv10008859m.g Eutrema salsugineum HOM05D003031 ORTHO05D003371 1.7e-14 83.2 47 74.5
Sp1g16660 Schrenkiella parvula HOM05D003031 ORTHO05D003371 2.3e-14 82.8 46 76.1
BcaC07g41308 Brassica carinata HOM05D003031 ORTHO05D003371 3.9e-14 82.0 47 72.3
A09p59770 Brassica napus HOM05D003031 ORTHO05D003371 3.9e-14 82.0 47 72.3
C08p43150 Brassica napus HOM05D003031 ORTHO05D003371 3.9e-14 82.0 47 72.3
BolC8t51870H Brassica oleracea HOM05D003031 ORTHO05D003371 3.9e-14 82.0 47 72.3
BraA09t41354Z Brassica rapa HOM05D003031 ORTHO05D003371 3.9e-14 82.0 47 72.3
MD06G1198200 Malus domestica HOM05D003031 ORTHO05D003371 5.1e-14 81.6 43 86.0
Glyma.17G103000 Glycine max HOM05D003031 ORTHO05D003371 6.6e-14 81.3 66 62.1
AT1G18680 Arabidopsis thaliana HOM05D003031 ORTHO05D003371 1.9e-13 79.7 47 72.3
Carub.0001s1831 Capsella rubella HOM05D003031 ORTHO05D003371 1.9e-13 79.7 47 72.3
AL1G31130 Arabidopsis lyrata HOM05D003031 ORTHO05D003371 3.3e-13 79.0 47 74.5
Oeu046986.2 Olea europaea HOM05D003031 ORTHO05D003371 3.3e-13 79.0 49 69.4
BcaB03g14490 Brassica carinata HOM05D003031 ORTHO05D003371 4.3e-13 78.6 47 70.2
Zm00001eb018220 Zea mays HOM05D001794 ORTHO05D000646 9.6e-13 77.4 51 68.6
Lsat_1_v5_gn_5_21340 Lactuca sativa HOM05D003031 ORTHO05D003371 4.8e-12 75.1 39 82.1
Zm00001eb017710 Zea mays HOM05D001794 ORTHO05D004177 6.2e-12 74.7 48 72.9
ATR0730G144 Amborella trichopoda HOM05D003031 ORTHO05D003371 1.1e-11 73.9 47 74.5
SMO337G0021 Selaginella moellendorffii HOM05D003031 ORTHO05D003371 7.6e-10 67.8 47 63.8
AagrBONN_evm.TU.Sc2ySwM_228.3810 Anthoceros agrestis HOM05D003031 ORTHO05D003371 9.9e-10 67.4 55 63.6
Pp3c18_10100 Physcomitrium patens HOM05D003031 ORTHO05D003371 9.9e-10 67.4 54 59.3
HPP92_020457 Vanilla planifolia HOM05D003031 ORTHO05D003371 3.8e-09 65.5 46 65.2
HPP92_026177 Vanilla planifolia HOM05D003031 ORTHO05D003371 4.9e-09 65.1 33 81.8
Mapoly0068s0002 Marchantia polymorpha HOM05D003031 ORTHO05D003371 2.4e-08 62.8 54 55.6
CBR_g30029 Chara braunii HOM05D003031 ORTHO05D003371 9.3e-08 60.8 54 57.4


User provided reference genes

Program Settings