Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 0.0e+00 1204.9 617 100.0
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 0.0e+00 1121.7 618 92.9
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 0.0e+00 1106.7 618 92.1
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 0.0e+00 1103.6 618 90.6
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 0.0e+00 1100.5 618 90.8
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 0.0e+00 1096.6 618 90.0
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 0.0e+00 1095.9 618 90.0
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 0.0e+00 1092.0 641 87.7
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 0.0e+00 1088.6 617 89.6
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 0.0e+00 1085.1 618 89.2
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 0.0e+00 1083.6 615 90.6
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 0.0e+00 1083.6 618 89.3
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 0.0e+00 1082.8 618 89.5
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 0.0e+00 1080.5 617 88.5
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 0.0e+00 1078.9 617 89.1
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 0.0e+00 1076.6 618 88.2
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 0.0e+00 1076.2 656 85.5
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 0.0e+00 1076.2 615 88.1
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 4.2e-312 1074.7 618 88.3
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 2.1e-311 1071.6 615 87.8
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 3.8e-311 1070.8 617 87.7
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 1.9e-310 1068.5 618 87.7
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 1.9e-310 1068.5 617 87.7
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 3.2e-310 1067.8 617 87.5
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 4.2e-310 1067.4 618 89.0
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 1.3e-308 1062.4 616 87.3
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 3.0e-308 1061.2 624 86.5
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 3.9e-308 1060.8 617 87.4
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 1.3e-306 1055.8 618 87.2
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 2.8e-306 1054.7 621 87.0
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 3.7e-306 1054.3 617 86.4
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 6.2e-306 1053.5 617 87.0
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.8e-305 1052.0 628 85.7
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 1.3e-303 1045.8 617 85.4
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 8.4e-303 1043.1 618 85.9
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 3.2e-302 1041.2 618 85.9
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 2.3e-300 1035.0 617 85.6
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 2.3e-300 1035.0 617 84.6
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 3.9e-300 1034.2 618 84.8
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 5.1e-300 1033.9 753 74.2
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 3.7e-298 1027.7 684 79.4
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 8.2e-298 1026.5 617 84.3
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 1.0e-295 1019.6 618 84.5
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 2.2e-295 1018.5 618 84.3
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 3.8e-295 1017.7 619 83.7
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 2.7e-293 1011.5 617 84.0
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 6.0e-293 1010.4 623 83.0
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 1.1e-291 1006.1 610 84.1
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 4.3e-291 1004.2 612 82.7
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 5.7e-291 1003.8 615 82.9
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 1.3e-290 1002.7 612 82.4
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 2.8e-290 1001.5 616 82.3
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 6.3e-290 1000.3 616 82.0
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 8.2e-290 1000.0 617 81.8
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 1.8e-289 998.8 618 82.7
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.8e-289 998.8 618 82.7
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 1.8e-289 998.8 616 81.7
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 5.3e-289 997.3 616 81.7
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 9.0e-289 996.5 616 81.7
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 4.5e-288 994.2 609 82.1
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 3.8e-287 991.1 616 81.5
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 1.1e-286 989.6 644 78.7
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 2.5e-286 988.4 616 81.0
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 2.5e-286 988.4 615 81.1
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 9.4e-286 986.5 615 80.8
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 2.3e-284 981.9 649 78.0
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 1.1e-283 979.5 622 80.4
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 1.1e-283 979.5 617 80.2
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 4.3e-283 977.6 615 81.6
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 2.4e-281 971.8 618 80.4
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 2.2e-279 965.3 628 78.3
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 3.8e-279 964.5 614 80.3
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 8.5e-279 963.4 616 79.5
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 3.2e-278 961.4 574 84.5
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 7.2e-278 960.3 613 79.9
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 1.2e-277 959.5 617 79.3
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 2.7e-277 958.4 616 79.7
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 7.9e-277 956.8 541 89.6
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 1.0e-271 939.9 599 79.6
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 5.2e-268 927.5 601 78.7
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 8.8e-268 926.8 633 76.6
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 3.3e-267 924.9 615 75.4
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 2.4e-265 918.7 582 80.4
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 4.1e-265 917.9 639 75.6
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 3.5e-264 914.8 617 77.0
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 6.1e-261 904.0 516 88.0
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 4.4e-259 897.9 615 73.5
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 7.5e-259 897.1 516 87.0
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 6.3e-258 894.0 623 75.8
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 2.7e-256 888.6 575 79.7
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 3.0e-252 875.2 513 87.1
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 1.8e-244 849.4 615 72.0
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 2.3e-244 849.0 616 69.5
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 1.5e-230 803.1 566 75.8
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 2.3e-228 795.8 446 89.7
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 8.9e-228 793.9 468 85.3
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.0e-220 768.5 557 73.8
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 5.2e-220 768.1 615 60.8
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 3.8e-210 735.3 620 59.5
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 9.0e-204 714.1 615 58.5
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 1.2e-187 660.6 649 52.1
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 2.1e-181 639.8 361 90.9
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 8.5e-170 601.3 488 69.5
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 2.1e-168 596.7 342 90.4
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 1.3e-165 587.4 360 83.6
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 3.1e-164 582.8 616 50.5
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 2.2e-154 550.1 393 75.6
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 1.1e-153 547.7 616 47.7
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 4.0e-143 512.7 364 70.6
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 6.4e-125 452.2 606 44.9
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 1.8e-124 450.7 510 45.5
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 1.0e-122 444.9 284 83.5
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 7.5e-118 428.7 374 65.2
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 5.1e-106 389.4 457 53.6
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 1.1e-81 308.5 175 89.1
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 2.0e-78 297.7 171 88.3
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.1e-71 275.4 186 69.9
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.3e-66 257.7 149 89.3
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 3.4e-62 243.8 144 86.1
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 6.1e-59 233.0 134 86.6
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 1.7e-53 214.9 117 88.9
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 2.7e-51 207.6 151 71.5
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 6.1e-51 206.5 122 85.2
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.9e-44 184.9 105 81.9
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.9e-44 184.9 135 68.9
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 3.2e-44 184.1 106 84.0
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 5.5e-44 183.3 105 90.5
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.3e-40 172.2 178 55.1
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 2.6e-33 147.9 86 87.2
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 4.5e-30 137.1 100 76.0
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.7e-29 135.2 74 91.9
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 1.0e-26 125.9 106 54.7
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 6.3e-24 116.7 84 72.6
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 2.4e-23 114.8 104 68.3
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 1.6e-22 112.1 58 86.2
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 2.0e-22 111.7 59 83.1
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 2.0e-22 111.7 59 83.1
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 1.1e-20 105.9 75 72.0
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 4.2e-20 104.0 60 76.7
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 4.2e-20 104.0 60 76.7
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 9.5e-20 102.8 54 88.9
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 5.4e-15 87.0 50 78.0
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 5.4e-15 87.0 56 69.6
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 5.6e-12 77.0 48 85.4
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 7.3e-12 76.6 42 83.3
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 8.9e-10 69.7 80 48.8
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 2.0e-09 68.6 50 58.0
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.7e-08 65.5 63 55.6
QL09p053081 Quercus lobata HOM05D002786 ORTHO05D030058 3.7e-08 64.3 43 79.1
Hma1.2p1_0717F.1_g208260 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 7.0e-07 60.1 34 85.3
Hma1.2p1_2056F.1_g312790 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 1.2e-06 59.3 33 87.9


User provided reference genes

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