Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv10342 Davidia involucrata HOM05D005863 ORTHO05D003355 1.0e-196 689.9 341 100.0
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 5.7e-83 312.0 339 51.9
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 1.5e-80 303.9 339 53.7
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 6.7e-76 288.5 336 50.9
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 5.7e-75 285.4 340 50.0
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 2.1e-69 266.9 346 46.5
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 6.1e-69 265.4 357 45.1
CiPaw.12G138700 Carya illinoinensis HOM05D014719 ORTHO05D003355 3.0e-60 236.5 344 44.2
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 9.4e-54 214.9 350 41.4
Actinidia35403 Actinidia chinensis HOM05D005863 ORTHO05D003355 1.7e-50 204.1 282 47.2
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 9.1e-49 198.4 317 41.0
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 2.2e-47 193.7 314 37.9
Rhsim10G0199200 Rhododendron simsii HOM05D005863 ORTHO05D003355 8.5e-47 191.8 308 40.6
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 8.0e-45 185.3 217 49.3
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 9.8e-43 178.3 365 34.8
Nitab4.5_0006876g0020 Nicotiana tabacum HOM05D005863 ORTHO05D003355 1.2e-40 171.4 344 36.3
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 3.8e-39 166.4 348 35.3
Nitab4.5_0001159g0240 Nicotiana tabacum HOM05D005863 ORTHO05D003355 3.3e-38 163.3 343 36.2
Eucgr.F03684 Eucalyptus grandis HOM05D005863 ORTHO05D003355 2.1e-37 160.6 343 34.1
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 1.8e-36 157.5 288 37.8
Cc05_g15010 Coffea canephora HOM05D005863 ORTHO05D003355 4.0e-36 156.4 314 35.7
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 8.9e-36 155.2 312 33.0
Duzib213G0291 Durio zibethinus HOM05D005863 ORTHO05D003355 2.6e-35 153.7 328 34.1
Haze_09834 Corylus avellana HOM05D014719 ORTHO05D003355 3.4e-35 153.3 216 45.4
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 7.5e-35 152.1 315 34.6
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 9.8e-35 151.8 354 31.9
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 1.3e-34 151.4 315 34.3
Lj6g0020676 Lotus japonicus HOM05D005863 ORTHO05D003355 1.8e-33 147.5 368 31.5
Rhsim10G0199400 Rhododendron simsii HOM05D005863 ORTHO05D003355 1.6e-32 144.4 269 34.6
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 2.0e-32 144.1 315 34.6
Glyma.09G051600 Glycine max HOM05D005863 ORTHO05D003355 5.0e-31 139.4 395 29.9
Manes.02G222900 Manihot esculenta HOM05D005863 ORTHO05D003355 1.9e-30 137.5 323 34.7
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 1.9e-30 137.5 309 35.3
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 1.6e-29 134.4 312 34.9
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 1.6e-29 134.4 342 33.9
TPR.G1700 Trifolium pratense HOM05D005863 ORTHO05D003355 2.8e-29 133.7 392 28.3
CANSAT78G1634 Cannabis sativa HOM05D005863 ORTHO05D003355 1.0e-28 131.7 331 33.5
PGR031G0790 Punica granatum HOM05D005863 ORTHO05D003355 1.8e-28 131.0 317 34.4
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 1.2e-27 128.3 327 34.9
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 3.4e-27 126.7 364 31.3
TWI38G1195 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 5.8e-27 125.9 313 31.0
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 4.9e-26 122.9 329 31.3
VMungo1309G2065 Vigna mungo HOM05D001598 ORTHO05D002757 4.9e-26 122.9 354 30.2
Medtr2g036070 Medicago truncatula HOM05D005863 ORTHO05D003355 4.1e-25 119.8 307 30.3
EL10Ac4g07554 Beta vulgaris HOM05D038882 ORTHO05D003355 7.0e-25 119.0 337 30.0
ClCG09G021400 Citrullus lanatus HOM05D031146 ORTHO05D003355 1.0e-23 115.2 347 30.8
Glyma.15G157900 Glycine max HOM05D005863 ORTHO05D003355 1.3e-23 114.8 373 27.6
DCAR_001919 Daucus carota HOM05D005863 ORTHO05D003355 1.5e-22 111.3 264 34.1
Rhsim10G0204100 Rhododendron simsii HOM05D005863 ORTHO05D003355 1.5e-22 111.3 275 33.8
Hund23103 Selenicereus undatus HOM05D005863 ORTHO05D003355 1.9e-22 110.9 337 32.0
arahy.Tifrunner.gnm1.ann1.11ED70 Arachis hypogaea HOM05D005863 ORTHO05D003355 2.1e-21 107.5 329 28.0
SGA_v2.0_scaffold171G38860 Striga asiatica HOM05D005863 ORTHO05D003355 2.8e-21 107.1 313 31.0
CsaV3_7G011440 Cucumis sativus L. HOM05D031146 ORTHO05D003355 6.2e-21 105.9 354 29.9
Psat1g149600 Pisum sativum HOM05D005863 ORTHO05D003355 8.1e-21 105.5 385 27.3
arahy.Tifrunner.gnm1.ann1.9BU9L2 Arachis hypogaea HOM05D005863 ORTHO05D003355 2.0e-19 100.9 330 27.3
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 4.4e-19 99.8 308 29.2
COL.COLO4_09843 Corchorus olitorius HOM05D005863 ORTHO05D003355 1.3e-18 98.2 276 30.4
Ca_02000_v3 Cicer arietinum L. HOM05D005863 ORTHO05D003355 6.4e-18 95.9 342 26.3
SalBow6G1550 Salvia bowleyana HOM05D005863 ORTHO05D003355 1.4e-17 94.7 314 30.3
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 2.4e-17 94.0 107 43.0
AUR62036468 Chenopodium quinoa HOM05D038882 ORTHO05D003355 3.2e-17 93.6 299 29.8
SalBow8G3261 Salvia bowleyana HOM05D005863 ORTHO05D003355 9.2e-17 92.0 306 29.7
Sed0025324 Sechium edule HOM05D031146 ORTHO05D003355 9.2e-17 92.0 346 27.7
Phvul.009G242100 Phaseolus vulgaris HOM05D005863 ORTHO05D003355 1.2e-16 91.7 315 29.2
Peaxi162Scf01762g00013 Petunia axillaris HOM05D005863 ORTHO05D003355 1.6e-16 91.3 117 42.7
ECA236G3808 Erigeron canadensis HOM05D000747 ORTHO05D001683 3.0e-15 87.0 185 33.5
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 6.6e-15 85.9 50 72.0
Carub.0001s4444 Capsella rubella HOM05D012516 ORTHO05D003355 5.6e-14 82.8 132 37.9
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 7.3e-14 82.4 200 31.0
AL1G63990 Arabidopsis lyrata HOM05D012516 ORTHO05D003355 2.8e-13 80.5 297 27.9
Thhalv10011171m.g Eutrema salsugineum HOM05D000747 ORTHO05D001683 8.9e-12 75.5 80 46.2
arahy.Tifrunner.gnm1.ann1.1NC23U Arachis hypogaea HOM05D015529 ORTHO05D015409 1.2e-11 75.1 253 27.7
arahy.Tifrunner.gnm1.ann1.VN6XRW Arachis hypogaea HOM05D015529 ORTHO05D015409 1.5e-11 74.7 126 33.3
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 2.6e-11 73.9 54 55.6
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 3.4e-11 73.6 101 35.6
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 4.4e-11 73.2 50 64.0
HPP92_003025 Vanilla planifolia HOM05D048574 ORTHO05D003355 4.4e-11 73.2 201 28.9
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 7.6e-11 72.4 55 49.1
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 1.3e-10 71.6 52 53.8
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 1.3e-10 71.6 49 49.0
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 1.7e-10 71.2 49 53.1
HPP92_027528 Vanilla planifolia HOM05D005863 ORTHO05D003355 2.2e-10 70.9 56 53.6
Medtr2g036080 Medicago truncatula HOM05D007390 ORTHO05D009114 2.9e-10 70.5 78 41.0
FAN28G3008 Fragaria x ananassa HOM05D014719 ORTHO05D003355 3.8e-10 70.1 371 27.5
AT1G55865 Arabidopsis thaliana HOM05D012516 ORTHO05D003355 4.9e-10 69.7 194 29.9
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 4.9e-10 69.7 55 47.3
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 4.9e-10 69.7 52 51.9
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 6.4e-10 69.3 52 50.0
CDE02G3774 Ceratophyllum demersum HOM05D005863 ORTHO05D003355 6.4e-10 69.3 86 36.0
arahy.Tifrunner.gnm1.ann1.5I91Y5 Arachis hypogaea HOM05D015529 ORTHO05D015409 8.4e-10 68.9 64 46.9
Oeu038657.1 Olea europaea HOM05D012928 ORTHO05D003355 8.4e-10 68.9 62 43.5
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 8.4e-10 68.9 55 45.5
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 1.1e-09 68.6 52 50.0
Aa31LG10G330 Aethionema arabicum HOM05D000747 ORTHO05D001683 1.4e-09 68.2 56 50.0
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 1.4e-09 68.2 51 49.0
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 1.4e-09 68.2 51 47.1
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 1.4e-09 68.2 57 42.1
Actinidia30696 Actinidia chinensis HOM05D005863 ORTHO05D003355 2.4e-09 67.4 56 48.2
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 3.2e-09 67.0 55 47.3
Sp1g41465 Schrenkiella parvula HOM05D012516 ORTHO05D003355 3.2e-09 67.0 80 38.8
BcaB02g10795 Brassica carinata HOM05D012516 ORTHO05D003355 4.1e-09 66.6 56 51.8
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 4.1e-09 66.6 50 52.0
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 4.1e-09 66.6 50 48.0
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 4.1e-09 66.6 50 50.0
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 5.4e-09 66.2 50 54.0
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 5.4e-09 66.2 50 50.0
ATR0824G200 Amborella trichopoda HOM05D005863 ORTHO05D003355 7.1e-09 65.9 57 47.4
BraA05t20625Z Brassica rapa HOM05D012516 ORTHO05D003355 7.1e-09 65.9 160 28.8
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 7.1e-09 65.9 80 37.5
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 7.1e-09 65.9 61 44.3
A05p17260 Brassica napus HOM05D012516 ORTHO05D003355 9.2e-09 65.5 160 30.0
CARHR045560 Cardamine hirsuta HOM05D000747 ORTHO05D001683 9.2e-09 65.5 54 51.9
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 9.2e-09 65.5 55 41.8
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 9.2e-09 65.5 53 45.3
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 1.2e-08 65.1 49 46.9
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 1.6e-08 64.7 50 52.0
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 1.6e-08 64.7 52 44.2
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 3.5e-08 63.5 51 47.1
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 4.6e-08 63.2 143 30.1
C06p16270 Brassica napus HOM05D012516 ORTHO05D003355 6.0e-08 62.8 70 42.9
BolC6t36826H Brassica oleracea HOM05D012516 ORTHO05D003355 6.0e-08 62.8 70 42.9
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 7.8e-08 62.4 50 48.0
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 7.8e-08 62.4 183 24.6
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 7.8e-08 62.4 65 36.9
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 1.3e-07 61.6 54 42.6
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 1.3e-07 61.6 55 45.5
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 1.3e-07 61.6 214 25.2
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 1.3e-07 61.6 58 39.7
AUR62017115 Chenopodium quinoa HOM05D038882 ORTHO05D003355 1.7e-07 61.2 157 34.4
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 1.7e-07 61.2 50 48.0
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 1.7e-07 61.2 50 46.0
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 1.7e-07 61.2 56 41.1
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 1.7e-07 61.2 50 42.0
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 1.7e-07 61.2 50 40.0
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 1.7e-07 61.2 50 40.0
CAN.G650.29 Capsicum annuum HOM05D012928 ORTHO05D003355 2.3e-07 60.8 50 40.0
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 2.3e-07 60.8 55 38.2
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 3.0e-07 60.5 52 46.2
BcaC08g44222 Brassica carinata HOM05D012516 ORTHO05D003355 3.0e-07 60.5 56 50.0
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 3.0e-07 60.5 50 44.0
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 3.9e-07 60.1 107 29.0
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 3.9e-07 60.1 50 46.0
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 3.9e-07 60.1 64 39.1
MELO3C024948.2 Cucumis melo HOM05D031146 ORTHO05D003355 5.1e-07 59.7 233 28.8
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 5.1e-07 59.7 49 46.9
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 6.6e-07 59.3 50 46.0
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 6.6e-07 59.3 50 46.0
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 6.6e-07 59.3 50 46.0
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 6.6e-07 59.3 50 42.0
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 6.6e-07 59.3 50 42.0
PSO478G3985 Papaver somniferum HOM05D040514 ORTHO05D003355 6.6e-07 59.3 50 44.0
ECA233G0282 Erigeron canadensis HOM05D007119 ORTHO05D009220 8.6e-07 58.9 56 44.6
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 1.5e-06 58.2 115 32.2
AUR62005538 Chenopodium quinoa HOM05D025851 ORTHO05D044019 1.9e-06 57.8 123 27.6
unitig_899.g14722 Utricularia gibba HOM05D012928 ORTHO05D003355 1.9e-06 57.8 50 42.0
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 2.5e-06 57.4 50 46.0
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 2.5e-06 57.4 50 46.0
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 3.3e-06 57.0 54 44.4
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 5.6e-06 56.2 50 44.0
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 5.6e-06 56.2 61 42.6
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 7.3e-06 55.8 56 42.9
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 9.6e-06 55.5 50 42.0


User provided reference genes

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