Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 3.9e-159 564.7 277 100.0
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 3.2e-116 422.2 249 81.1
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 7.0e-116 421.0 249 81.9
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 4.7e-112 408.3 250 78.0
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 2.6e-110 402.5 246 79.7
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 7.5e-110 401.0 264 75.8
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 9.8e-110 400.6 247 76.1
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 2.2e-109 399.4 248 78.2
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 1.4e-108 396.7 248 76.2
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 1.9e-108 396.4 245 75.5
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 4.1e-108 395.2 246 75.6
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 5.4e-108 394.8 248 77.0
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 3.5e-107 392.1 271 70.8
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 5.1e-106 388.3 248 73.4
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 4.3e-105 385.2 248 72.2
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 1.2e-104 383.6 248 74.6
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 1.6e-104 383.3 248 72.2
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 1.6e-104 383.3 248 72.2
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 3.6e-104 382.1 248 73.0
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 3.6e-104 382.1 248 74.2
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 6.2e-104 381.3 249 71.9
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 8.1e-104 380.9 248 73.8
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 1.1e-103 380.6 248 73.8
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 1.4e-103 380.2 248 70.6
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 1.2e-102 377.1 245 71.4
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 1.5e-102 376.7 245 71.8
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 2.6e-102 375.9 247 73.7
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 2.6e-102 375.9 249 69.9
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 3.4e-102 375.6 248 73.0
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 5.8e-102 374.8 241 72.6
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 9.9e-102 374.0 248 71.8
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.2e-101 372.9 248 72.2
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 2.9e-101 372.5 248 72.2
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 3.7e-101 372.1 246 69.9
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 3.7e-101 372.1 246 74.8
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 4.9e-101 371.7 248 71.8
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 1.1e-100 370.5 246 70.7
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 1.1e-100 370.5 248 71.8
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 1.4e-100 370.2 248 71.0
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 4.1e-100 368.6 249 71.9
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 4.1e-100 368.6 248 71.4
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 4.1e-100 368.6 245 71.0
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 5.4e-100 368.2 274 65.3
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 7.1e-100 367.9 246 69.9
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 7.1e-100 367.9 244 71.7
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 1.2e-99 367.1 248 71.4
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 3.5e-99 365.5 240 72.9
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 1.3e-98 363.6 245 71.0
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 2.3e-98 362.8 250 71.2
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 3.9e-98 362.1 245 68.6
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 6.6e-98 361.3 246 71.1
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 6.6e-98 361.3 245 72.7
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 1.5e-97 360.1 247 68.0
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 5.6e-97 358.2 243 69.1
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 7.3e-97 357.8 288 61.8
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.2e-96 357.1 216 80.6
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 3.6e-96 355.5 243 70.8
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 4.0e-95 352.1 248 69.0
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 5.2e-95 351.7 249 69.9
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 5.2e-95 351.7 246 67.5
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 1.2e-94 350.5 243 68.7
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 1.3e-93 347.1 248 68.1
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 2.9e-93 345.9 247 66.8
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 6.4e-93 344.7 260 68.8
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 1.9e-92 343.2 247 66.0
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 2.4e-92 342.8 247 67.2
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 3.2e-92 342.4 226 71.7
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 1.6e-91 340.1 247 67.2
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 1.6e-91 340.1 248 66.1
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 2.1e-91 339.7 247 64.8
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 3.5e-91 339.0 251 66.5
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 3.5e-91 339.0 247 66.8
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 4.6e-91 338.6 243 66.7
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 4.6e-91 338.6 243 66.3
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 4.6e-91 338.6 245 68.2
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 4.6e-91 338.6 243 67.1
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 7.8e-91 337.8 221 74.7
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 1.3e-90 337.0 247 65.2
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 3.0e-90 335.9 204 77.5
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 3.9e-90 335.5 203 77.8
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 1.5e-89 333.6 248 66.1
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 2.5e-89 332.8 245 65.7
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 1.6e-88 330.1 243 65.8
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 2.8e-88 329.3 248 65.7
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 4.8e-88 328.6 248 64.1
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 6.2e-88 328.2 243 66.7
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 4.4e-86 322.0 204 75.5
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 1.9e-84 316.6 245 63.7
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 7.1e-84 314.7 275 61.5
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 4.6e-83 312.0 195 73.8
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 3.9e-82 308.9 192 75.0
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 6.6e-82 308.1 242 62.8
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 9.6e-81 304.3 194 72.7
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 1.1e-79 300.8 203 70.9
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 2.6e-78 296.2 216 64.4
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 2.6e-78 296.2 177 79.1
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 3.4e-78 295.8 216 63.4
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 7.6e-78 294.7 244 61.1
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 4.9e-77 292.0 217 65.0
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 4.9e-77 292.0 217 65.0
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 9.3e-76 287.7 217 64.1
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 2.7e-75 286.2 237 60.8
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 3.5e-75 285.8 217 63.6
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 4.6e-75 285.4 196 71.4
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 4.8e-72 275.4 243 55.1
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 7.6e-70 268.1 186 68.3
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 7.6e-70 268.1 264 51.1
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 1.7e-69 266.9 243 53.9
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 3.8e-69 265.8 248 56.0
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 4.9e-69 265.4 253 52.6
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 3.2e-68 262.7 275 47.6
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 7.1e-68 261.5 202 66.8
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 1.6e-67 260.4 196 67.3
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 1.8e-66 256.9 166 71.1
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 4.3e-65 252.3 235 53.2
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 9.6e-65 251.1 242 55.0
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 4.8e-64 248.8 248 48.0
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.2e-62 244.2 194 63.9
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 2.6e-62 243.0 244 57.0
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 5.0e-61 238.8 200 59.5
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 4.2e-60 235.7 180 67.8
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 4.6e-59 232.3 225 54.2
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 6.1e-59 231.9 226 50.4
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 1.3e-58 230.7 168 63.1
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 1.3e-56 224.2 144 73.6
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 3.7e-56 222.6 172 66.9
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 2.5e-52 209.9 232 49.1
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 2.5e-52 209.9 214 47.2
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 3.0e-50 203.0 196 51.5
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 1.5e-49 200.7 133 73.7
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 1.2e-46 191.0 242 44.6
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 1.2e-46 191.0 198 51.0
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 2.6e-46 189.9 112 80.4
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 2.7e-43 179.9 192 50.5
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 4.4e-41 172.6 105 79.0
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 6.3e-40 168.7 219 41.6
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 1.7e-37 160.6 106 67.9
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 2.9e-37 159.8 108 67.6
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 1.9e-36 157.1 108 71.3
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 5.5e-36 155.6 215 45.6
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 6.1e-35 152.1 103 68.9
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.3e-32 144.4 162 52.5
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 2.2e-24 117.1 161 41.0
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 5.4e-23 112.5 101 53.5
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 3.6e-19 99.8 65 72.3
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 5.2e-18 95.9 67 70.1
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.4e-15 87.0 55 70.9
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-13 81.3 88 47.7
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 2.5e-12 77.0 72 54.2
FAN16G1285 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.4e-10 71.2 44 72.7
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 1.5e-09 67.8 107 33.6
FAN14G1154 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.2e-06 58.2 80 40.0


User provided reference genes

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