Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 4.5e-178 627.9 332 100.0
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 1.9e-139 499.6 333 79.9
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 3.5e-138 495.4 333 78.4
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.3e-137 493.4 333 77.2
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 5.6e-136 488.0 328 76.5
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 4.8e-135 485.0 333 78.1
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 3.1e-134 482.3 333 75.7
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.3e-132 476.9 331 76.4
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 4.9e-132 474.9 331 76.1
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 5.4e-131 471.5 332 75.0
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 5.1e-129 464.9 332 75.0
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 5.1e-129 464.9 334 72.8
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 2.4e-126 456.1 332 70.8
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 9.0e-126 454.1 327 72.5
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 3.8e-124 448.7 333 69.1
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 3.2e-123 445.7 333 70.0
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 5.5e-123 444.9 332 66.3
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 9.3e-123 444.1 333 72.1
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 1.2e-122 443.7 333 72.1
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 2.1e-122 443.0 332 67.2
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 4.6e-122 441.8 338 68.0
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 5.1e-121 438.3 386 62.7
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 5.1e-121 438.3 333 70.3
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 6.7e-121 438.0 333 71.5
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 8.7e-121 437.6 333 67.6
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 1.1e-120 437.2 334 69.2
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 1.9e-120 436.4 335 69.3
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 3.3e-120 435.6 333 68.8
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 5.6e-120 434.9 333 68.8
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 3.7e-119 432.2 334 68.0
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 6.2e-119 431.4 333 67.3
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 2.4e-118 429.5 333 67.6
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 3.1e-118 429.1 333 69.1
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 2.6e-117 426.0 333 64.9
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 3.4e-117 425.6 334 65.9
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 4.5e-117 425.2 334 66.8
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 5.8e-117 424.9 334 65.9
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.7e-116 423.3 334 65.3
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 2.9e-116 422.5 325 69.2
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 3.8e-116 422.2 372 64.8
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 4.9e-116 421.8 332 66.3
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 6.5e-116 421.4 334 65.9
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.9e-115 419.9 333 68.8
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.5e-115 419.5 333 68.8
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 5.5e-115 418.3 330 67.6
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 2.7e-114 416.0 333 68.2
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.5e-114 415.6 339 67.0
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.6e-114 415.2 333 68.2
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 7.9e-114 414.5 332 65.4
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 1.0e-113 414.1 340 65.6
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 8.7e-113 411.0 339 67.0
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 8.7e-113 411.0 339 67.6
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 8.7e-113 411.0 335 64.8
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 1.1e-112 410.6 245 86.9
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 2.5e-112 409.5 334 66.8
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 5.7e-112 408.3 280 74.6
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 5.7e-112 408.3 332 62.3
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 4.8e-111 405.2 335 64.8
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 8.2e-111 404.4 274 75.5
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 9.0e-110 401.0 333 65.2
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.0e-109 399.8 333 66.1
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 4.5e-109 398.7 337 62.0
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 5.9e-109 398.3 274 74.1
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 2.2e-108 396.4 321 61.1
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 3.8e-108 395.6 321 60.7
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.4e-107 393.7 339 64.3
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 1.6e-106 390.2 330 62.7
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 2.1e-106 389.8 321 60.7
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 6.1e-106 388.3 338 64.2
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 1.3e-105 387.1 338 63.6
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 6.7e-105 384.8 332 64.5
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 6.7e-105 384.8 362 61.3
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 8.7e-105 384.4 337 62.0
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.1e-104 384.0 321 60.4
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 7.4e-104 381.3 337 61.7
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 1.7e-103 380.2 337 62.3
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 3.7e-103 379.0 321 61.4
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 8.2e-103 377.9 332 60.8
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 1.1e-102 377.5 339 59.0
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 1.8e-102 376.7 343 61.8
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 6.9e-102 374.8 332 63.6
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 6.9e-102 374.8 335 60.9
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 9.1e-102 374.4 337 63.5
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 1.2e-101 374.0 337 60.5
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 4.5e-101 372.1 344 57.6
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 5.0e-100 368.6 350 60.9
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 1.2e-98 364.0 337 56.7
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 4.7e-98 362.1 334 59.3
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 1.3e-95 354.0 332 59.6
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 3.7e-95 352.4 341 54.8
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 5.3e-94 348.6 251 72.1
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 9.1e-94 347.8 334 57.5
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 2.0e-93 346.7 328 59.8
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 5.9e-93 345.1 273 63.4
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 2.9e-92 342.8 335 57.9
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 8.5e-92 341.3 333 55.9
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 2.5e-91 339.7 340 52.6
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 3.2e-91 339.3 333 57.7
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 5.5e-91 338.6 337 57.6
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 5.5e-91 338.6 337 57.6
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 5.5e-91 338.6 337 57.6
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 2.1e-90 336.7 307 60.6
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 4.7e-90 335.5 340 53.2
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 6.1e-90 335.1 333 57.7
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.0e-89 334.3 340 52.9
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 1.4e-89 334.0 339 58.1
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 1.8e-89 333.6 377 53.8
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 3.0e-89 332.8 322 57.5
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 6.7e-89 331.6 333 58.3
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 7.4e-88 328.2 339 52.8
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 7.4e-88 328.2 322 56.5
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 1.3e-87 327.4 335 56.1
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 2.8e-87 326.2 328 54.0
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 8.2e-87 324.7 333 57.1
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 8.2e-87 324.7 333 53.2
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 1.8e-86 323.6 337 55.2
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 1.8e-86 323.6 337 55.2
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 4.1e-86 322.4 335 55.2
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 1.2e-85 320.9 336 56.2
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 2.6e-85 319.7 334 51.8
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 3.5e-85 319.3 329 55.6
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 3.5e-85 319.3 337 56.1
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 1.7e-84 317.0 329 53.8
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 6.5e-84 315.1 329 54.1
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 5.5e-83 312.0 340 56.2
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 4.7e-82 308.9 340 55.9
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 6.1e-82 308.5 219 71.2
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 1.0e-81 307.8 340 55.9
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 8.8e-81 304.7 278 58.6
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 8.2e-79 298.1 317 54.9
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 5.3e-78 295.4 369 51.8
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 2.0e-77 293.5 327 53.2
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 1.7e-76 290.4 235 67.7
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 2.9e-76 289.7 247 60.3
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 7.5e-72 275.0 323 50.2
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 2.2e-71 273.5 296 53.7
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 2.3e-68 263.5 309 53.1
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 1.6e-66 257.3 211 69.2
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 2.4e-62 243.4 256 54.3
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 1.3e-60 237.7 180 65.6
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 1.7e-60 237.3 163 69.3
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 1.1e-59 234.6 163 73.0
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 1.2e-56 224.6 290 49.3
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.6e-56 223.4 203 65.5
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.6e-56 223.4 203 65.0
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 1.7e-55 220.7 323 45.2
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 3.7e-55 219.5 325 44.9
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 6.4e-55 218.8 203 61.6
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 2.4e-54 216.9 229 50.2
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 5.6e-51 205.7 233 48.5
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 4.7e-50 202.6 333 41.4
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 3.1e-49 199.9 174 62.1
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.4e-46 191.0 147 68.0
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 7.8e-45 185.3 148 60.1
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 6.2e-42 175.6 128 67.2
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 1.1e-38 164.9 136 57.4
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 1.5e-35 154.5 209 45.5
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 1.6e-34 151.0 125 58.4
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 1.4e-33 147.9 203 50.7
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 5.2e-33 146.0 134 59.7
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 3.4e-32 143.3 138 54.3
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 1.9e-27 127.5 98 66.3
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 1.5e-24 117.9 104 53.8
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 4.2e-22 109.8 219 36.1
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.4e-17 94.0 306 29.1
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 6.9e-17 92.4 142 40.1
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 1.5e-16 91.3 90 48.9
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 7.6e-16 89.0 63 69.8
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 1.6e-13 81.3 234 31.6
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 1.3e-12 78.2 60 68.3
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 6.4e-07 59.3 36 75.0


User provided reference genes

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