Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv10315 Davidia involucrata HOM05D007725 ORTHO05D009774 4.0e-165 585.5 514 100.0
TAR624G0507 Trochodendron aralioides HOM05D007725 ORTHO05D009774 2.9e-91 340.1 343 82.8
Hma1.2p1_2796F.1_g328670 Hydrangea macrophylla HOM05D007725 ORTHO05D009774 3.8e-91 339.7 447 81.4
CSS0027076 Camellia sinensis var. sinensis HOM05D007725 ORTHO05D009774 6.1e-89 332.4 447 65.5
Lj1P886T16 Lonicera japonica HOM05D007725 ORTHO05D009774 1.0e-88 331.6 446 74.0
Peaxi162Scf00955g00014 Petunia axillaris HOM05D007725 ORTHO05D009774 1.0e-80 305.1 445 65.6
Nitab4.5_0002517g0030 Nicotiana tabacum HOM05D007725 ORTHO05D009774 8.8e-80 302.0 447 63.8
Sopen12g007550 Solanum pennellii HOM05D007725 ORTHO05D009774 7.5e-79 298.9 445 64.9
PGSC0003DMG402029798 Solanum tuberosum HOM05D007725 ORTHO05D009774 1.7e-78 297.7 445 64.9
Solyc12g015650.3 Solanum lycopersicum HOM05D007725 ORTHO05D009774 7.0e-77 292.4 445 64.3
Cc05_g14730 Coffea canephora HOM05D007725 ORTHO05D009774 1.5e-74 284.6 446 70.0
Nn1g03245 Nelumbo nucifera HOM05D007725 ORTHO05D009774 1.4e-72 278.1 457 65.9
Nn1g03425 Nelumbo nucifera HOM05D007725 ORTHO05D009774 1.4e-72 278.1 446 72.9
Nitab4.5_0000163g0300 Nicotiana tabacum HOM05D007725 ORTHO05D009774 6.8e-72 275.8 445 67.4
Haze_09790 Corylus avellana HOM05D007725 ORTHO05D009774 4.4e-71 273.1 435 75.6
VMungo0540G1375 Vigna mungo HOM05D007725 ORTHO05D009774 4.4e-71 273.1 441 63.0
Glyma.08G326100 Glycine max HOM05D007725 ORTHO05D009774 9.8e-71 271.9 439 64.0
Ciclev10008214m.g Citrus clementina HOM05D007725 ORTHO05D009774 4.9e-70 269.6 439 70.6
Cfa020227 Carpinus fangiana HOM05D007725 ORTHO05D009774 5.4e-69 266.2 439 70.6
DCAR_022605 Daucus carota HOM05D007725 ORTHO05D009774 1.2e-68 265.0 453 53.4
MSTRG.15782 Avicennia marina HOM05D007725 ORTHO05D009774 2.7e-68 263.8 459 64.3
ClCG09G021110 Citrullus lanatus HOM05D007725 ORTHO05D009774 4.6e-68 263.1 434 66.8
GSVIVG01037783001 Vitis vinifera HOM05D007725 ORTHO05D009774 3.0e-67 260.4 341 66.3
GSVIVG01037784001 Vitis vinifera HOM05D007725 ORTHO05D009774 8.6e-67 258.8 343 64.1
COL.COLO4_09791 Corchorus olitorius HOM05D007725 ORTHO05D009774 1.9e-66 257.7 431 65.0
Cpa.g.sc12.189 Carica papaya HOM05D007725 ORTHO05D009774 8.9e-64 248.8 352 68.5
Duzib170G0716 Durio zibethinus HOM05D007725 ORTHO05D009774 2.2e-62 244.2 436 58.0
MELO3C024908.2 Cucumis melo HOM05D007725 ORTHO05D009774 1.7e-59 234.6 446 61.0
HanXRQChr11g0333971 Helianthus annuus HOM05D007725 ORTHO05D009774 2.3e-59 234.2 442 51.8
Manes.03G138100 Manihot esculenta HOM05D007725 ORTHO05D009774 2.3e-59 234.2 343 70.8
Migut.M01753 Erythranthe guttata HOM05D007725 ORTHO05D009774 3.9e-59 233.4 337 62.6
CsaV3_7G018510 Cucumis sativus L. HOM05D007725 ORTHO05D009774 2.5e-58 230.7 447 63.3
PSO478G1598 Papaver somniferum HOM05D007725 ORTHO05D009774 1.6e-57 228.0 454 63.4
Nn1g07446 Nelumbo nucifera HOM05D007725 ORTHO05D009774 1.1e-56 225.3 340 61.5
QL08p005480 Quercus lobata HOM05D007725 ORTHO05D009774 1.4e-56 224.9 450 63.3
Gohir.A11G277300 Gossypium hirsutum HOM05D007725 ORTHO05D009774 5.2e-56 223.0 341 51.9
Oeu005490.1 Olea europaea HOM05D007725 ORTHO05D009774 1.2e-55 221.9 167 67.1
Gorai.007G311000 Gossypium raimondii HOM05D007725 ORTHO05D009774 2.0e-55 221.1 341 48.4
Medtr3g056580 Medicago truncatula HOM05D007725 ORTHO05D009774 1.1e-53 215.3 340 47.6
Psat5g175640 Pisum sativum HOM05D007725 ORTHO05D009774 1.1e-53 215.3 340 57.9
Ca_26464_v3 Cicer arietinum L. HOM05D007725 ORTHO05D009774 3.5e-52 210.3 431 52.4
ATR1149G149 Amborella trichopoda HOM05D007725 ORTHO05D009774 4.6e-52 209.9 432 70.8
Sed0002917 Sechium edule HOM05D007725 ORTHO05D009774 6.0e-52 209.5 432 60.9
AUR62040655 Chenopodium quinoa HOM05D007725 ORTHO05D009774 2.5e-50 204.1 339 65.2
arahy.Tifrunner.gnm1.ann1.TWJV4J Arachis hypogaea HOM05D007725 ORTHO05D009774 7.3e-50 202.6 441 57.8
arahy.Tifrunner.gnm1.ann1.LCTM2T Arachis hypogaea HOM05D007725 ORTHO05D009774 9.5e-50 202.2 441 58.0
Gohir.D11G287700 Gossypium hirsutum HOM05D007725 ORTHO05D009774 9.5e-50 202.2 331 50.5
EL10Ac4g07611 Beta vulgaris HOM05D007725 ORTHO05D009774 2.8e-49 200.7 350 56.0
SalBow8G2031 Salvia bowleyana HOM05D007725 ORTHO05D009774 2.8e-49 200.7 313 64.5
AUR62017062 Chenopodium quinoa HOM05D007725 ORTHO05D009774 3.6e-49 200.3 339 63.7
arahy.Tifrunner.gnm1.ann1.Q8DMES Arachis hypogaea HOM05D007725 ORTHO05D009774 1.8e-48 198.0 441 59.6
SEGI_22467 Sequoiadendron giganteum HOM05D007725 ORTHO05D009774 6.4e-46 189.5 431 61.9
C03p50970 Brassica napus HOM05D007725 ORTHO05D009774 1.1e-45 188.7 351 54.7
AT3G20170 Arabidopsis thaliana HOM05D007725 ORTHO05D009774 1.9e-45 188.0 343 56.3
AL3G33870 Arabidopsis lyrata HOM05D007725 ORTHO05D009774 4.1e-45 186.8 343 54.5
CARHR095760 Cardamine hirsuta HOM05D007725 ORTHO05D009774 1.2e-44 185.3 343 54.5
BolC3t17381H Brassica oleracea HOM05D007725 ORTHO05D009774 2.3e-43 181.0 351 53.6
Carub.0003s2010 Capsella rubella HOM05D007725 ORTHO05D009774 6.6e-43 179.5 344 55.5
SGA_v2.0_scaffold168G38532 Striga asiatica HOM05D007725 ORTHO05D009774 6.6e-43 179.5 337 36.5
BcaB04g19094 Brassica carinata HOM05D007725 ORTHO05D009774 3.3e-42 177.2 351 55.3
A03p41610 Brassica napus HOM05D007725 ORTHO05D009774 9.6e-42 175.6 341 54.8
BraA03t13314Z Brassica rapa HOM05D007725 ORTHO05D009774 9.6e-42 175.6 341 54.8
TPR.G1953 Trifolium pratense HOM05D007725 ORTHO05D009774 1.6e-41 174.9 340 35.6
Aa31LG8G7000 Aethionema arabicum HOM05D007725 ORTHO05D009774 3.6e-41 173.7 359 53.5
Sp3g18200 Schrenkiella parvula HOM05D007725 ORTHO05D009774 1.8e-40 171.4 350 53.4
Phvul.006G053700 Phaseolus vulgaris HOM05D007725 ORTHO05D009774 3.1e-40 170.6 344 65.7
PGR031G2940 Punica granatum HOM05D007725 ORTHO05D009774 6.8e-40 169.5 354 50.8
Thecc.07G022000 Theobroma cacao HOM05D007725 ORTHO05D009774 5.8e-39 166.4 174 52.9
BolC5t33143H Brassica oleracea HOM05D007725 ORTHO05D009774 1.7e-38 164.9 342 53.8
Thhalv10020642m.g Eutrema salsugineum HOM05D007725 ORTHO05D009774 1.7e-38 164.9 344 54.1
C05p44210 Brassica napus HOM05D007725 ORTHO05D009774 2.2e-38 164.5 342 53.8
A05p28800 Brassica napus HOM05D007725 ORTHO05D009774 2.9e-38 164.1 342 53.5
Lj6g0003901 Lotus japonicus HOM05D007725 ORTHO05D009774 7.1e-37 159.5 341 51.6
Lj6g0016094 Lotus japonicus HOM05D007725 ORTHO05D009774 2.7e-36 157.5 439 54.2
Lj2g0017250 Lotus japonicus HOM05D007725 ORTHO05D009774 3.5e-36 157.1 339 33.0
Lj6g0024671 Lotus japonicus HOM05D007725 ORTHO05D009774 3.4e-31 140.6 340 48.5
HPP92_006089 Vanilla planifolia HOM05D007725 ORTHO05D009774 3.9e-27 127.1 337 54.9
BraA05t21757Z Brassica rapa HOM05D007725 ORTHO05D009774 1.5e-23 115.2 172 43.0
COL.COLO4_09793 Corchorus olitorius HOM05D007725 ORTHO05D009774 3.4e-23 114.0 165 42.4
BcaC01g03576 Brassica carinata HOM05D007725 ORTHO05D009774 2.4e-21 107.8 181 38.7
TPR.G1910 Trifolium pratense HOM05D007725 ORTHO05D009774 2.4e-16 91.3 68 67.6
BcaC02g11617 Brassica carinata HOM05D007725 ORTHO05D009774 7.9e-12 76.3 50 74.0


User provided reference genes

Program Settings