Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv09926 Davidia involucrata HOM05D003687 ORTHO05D004571 3.1e-81 305.1 153 100.0
Dinv37828 Davidia involucrata HOM05D003687 ORTHO05D004571 1.4e-76 289.7 153 95.4
Dinv29031 Davidia involucrata HOM05D003687 ORTHO05D034002 4.3e-75 284.6 147 96.6
Dinv17413 Davidia involucrata HOM05D003687 ORTHO05D004571 1.4e-65 253.1 129 99.2
CSS0042676 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 1.0e-52 210.3 157 70.1
Hma1.2p1_0300F.1_g118150 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 2.0e-51 206.1 157 68.8
Lsat_1_v5_gn_8_23040 Lactuca sativa HOM05D003687 ORTHO05D004571 2.6e-51 205.7 157 67.5
Hma1.2p1_2491F.1_g323220 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 4.4e-51 204.9 157 68.8
CANSAT25G3704 Cannabis sativa HOM05D003687 ORTHO05D004571 9.8e-51 203.8 157 68.2
CsaV3_3G000370 Cucumis sativus L. HOM05D003687 ORTHO05D004571 9.8e-51 203.8 180 61.1
MELO3C013732.2 Cucumis melo HOM05D003687 ORTHO05D004571 2.2e-50 202.6 180 60.6
FAN28G1596 Fragaria x ananassa HOM05D003687 ORTHO05D004571 2.2e-50 202.6 170 64.1
A08p21800 Brassica napus HOM05D003687 ORTHO05D004571 2.8e-50 202.2 157 66.9
Cfa007065 Carpinus fangiana HOM05D003687 ORTHO05D004571 2.8e-50 202.2 157 66.2
A09p11460 Brassica napus HOM05D003687 ORTHO05D004571 3.7e-50 201.8 157 66.9
Lalb_Chr05g0211911 Lupinus albus HOM05D003687 ORTHO05D004571 4.8e-50 201.4 157 66.9
RcHm_v2.0_Chr2g0097441 Rosa chinensis HOM05D003687 ORTHO05D004571 4.8e-50 201.4 157 67.5
BraA09t36786Z Brassica rapa HOM05D003687 ORTHO05D004571 6.3e-50 201.1 157 66.2
Haze_03674 Corylus avellana HOM05D003687 ORTHO05D004571 6.3e-50 201.1 157 65.6
Medtr8g074010 Medicago truncatula HOM05D003687 ORTHO05D004571 6.3e-50 201.1 157 66.2
THA.LOC104807434 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 1.1e-49 200.3 157 66.2
THA.LOC104819724 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 1.1e-49 200.3 157 66.9
BraA08t34133Z Brassica rapa HOM05D003687 ORTHO05D004571 1.4e-49 199.9 157 66.9
vmacro20525 Vaccinium macrocarpon HOM05D003687 ORTHO05D004571 1.4e-49 199.9 155 66.5
BcaC04g22959 Brassica carinata HOM05D003687 ORTHO05D004571 1.8e-49 199.5 157 66.2
BolC9t54238H Brassica oleracea HOM05D003687 ORTHO05D004571 1.8e-49 199.5 157 66.2
CARHR243980 Cardamine hirsuta HOM05D003687 ORTHO05D004571 1.8e-49 199.5 157 66.2
AUR62029452 Chenopodium quinoa HOM05D003687 ORTHO05D004571 1.8e-49 199.5 157 66.2
FAN26G2468 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.8e-49 199.5 170 63.5
Glyma.02G041900 Glycine max HOM05D003687 ORTHO05D004571 1.8e-49 199.5 157 66.2
TPR.G18309 Trifolium pratense HOM05D003687 ORTHO05D004571 1.8e-49 199.5 157 65.0
Cpa.g.sc535.4 Carica papaya HOM05D003687 ORTHO05D004571 2.4e-49 199.1 157 65.6
ClCG10G000330 Citrullus lanatus HOM05D003687 ORTHO05D004571 2.4e-49 199.1 180 58.9
FvH4_1g10530 Fragaria vesca HOM05D003687 ORTHO05D004571 2.4e-49 199.1 157 67.5
FAN19G1222 Fragaria x ananassa HOM05D003687 ORTHO05D004571 2.4e-49 199.1 157 67.5
Rhsim10G0197900 Rhododendron simsii HOM05D003687 ORTHO05D004571 2.4e-49 199.1 157 65.6
Aa31LG8G14900 Aethionema arabicum HOM05D003687 ORTHO05D004571 3.1e-49 198.7 157 66.2
BcaC01g00508 Brassica carinata HOM05D003687 ORTHO05D004571 3.1e-49 198.7 157 66.2
C03p80790 Brassica napus HOM05D003687 ORTHO05D004571 3.1e-49 198.7 157 66.2
FAN23G1902 Fragaria x ananassa HOM05D003687 ORTHO05D004571 3.1e-49 198.7 170 62.9
Manes.02G112800 Manihot esculenta HOM05D003687 ORTHO05D004571 3.1e-49 198.7 157 65.0
Aqoxy1G00525 Aquilegia oxysepala HOM05D003687 ORTHO05D004571 4.1e-49 198.4 157 65.6
C09p13480 Brassica napus HOM05D003687 ORTHO05D004571 4.1e-49 198.4 157 65.6
Oeu028610.1 Olea europaea HOM05D003687 ORTHO05D004571 4.1e-49 198.4 157 66.2
PSO339G2900 Papaver somniferum HOM05D003687 ORTHO05D004571 4.1e-49 198.4 157 65.6
Prupe.7G180700 Prunus persica HOM05D003687 ORTHO05D004571 5.4e-49 198.0 157 65.0
QL06p052789 Quercus lobata HOM05D003687 ORTHO05D004571 5.4e-49 198.0 157 66.2
QL06p053788 Quercus lobata HOM05D003687 ORTHO05D004571 5.4e-49 198.0 157 66.2
AT2G17630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 7.0e-49 197.6 157 65.6
AT4G35630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 7.0e-49 197.6 157 65.6
BcaB07g31719 Brassica carinata HOM05D003687 ORTHO05D004571 7.0e-49 197.6 157 65.6
Manes.01G153800 Manihot esculenta HOM05D003687 ORTHO05D004571 7.0e-49 197.6 157 65.0
Psat0s1725g0080 Pisum sativum HOM05D003687 ORTHO05D004571 7.0e-49 197.6 183 59.6
Psat2g150440 Pisum sativum HOM05D003687 ORTHO05D004571 7.0e-49 197.6 157 66.2
Sp3g30960 Schrenkiella parvula HOM05D003687 ORTHO05D004571 7.0e-49 197.6 157 65.6
VMungo1215G1127 Vigna mungo HOM05D003687 ORTHO05D004571 7.0e-49 197.6 157 65.6
Ah.03g148400 Amaranthus hybridus HOM05D003687 ORTHO05D004571 9.1e-49 197.2 157 66.2
Cc07_g11670 Coffea canephora HOM05D003687 ORTHO05D004571 9.1e-49 197.2 157 66.2
AL3G50590 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 1.2e-48 196.8 157 65.6
TWI09G0502 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 1.2e-48 196.8 157 65.6
BolC3t20334H Brassica oleracea HOM05D003687 ORTHO05D004571 1.6e-48 196.4 157 65.6
CiPaw.07G004000 Carya illinoinensis HOM05D003687 ORTHO05D004571 1.6e-48 196.4 157 64.3
Ca_19449_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 1.6e-48 196.4 157 65.0
Glyma.01G159800 Glycine max HOM05D003687 ORTHO05D004571 1.6e-48 196.4 157 65.6
Glyma.11G084400 Glycine max HOM05D003687 ORTHO05D004571 1.6e-48 196.4 157 66.2
CiPaw.08G180600 Carya illinoinensis HOM05D003687 ORTHO05D004571 2.0e-48 196.1 157 63.7
Lalb_Chr09g0321291 Lupinus albus HOM05D003687 ORTHO05D004571 2.0e-48 196.1 157 65.0
Peaxi162Scf01446g00005 Petunia axillaris HOM05D003687 ORTHO05D004571 2.0e-48 196.1 157 65.6
Phvul.002G115000 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 2.0e-48 196.1 157 65.6
TAR376G1076 Trochodendron aralioides HOM05D003687 ORTHO05D004571 2.0e-48 196.1 157 65.0
Carub.0003s3171 Capsella rubella HOM05D003687 ORTHO05D004571 2.7e-48 195.7 157 65.6
Ca_24964_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 3.5e-48 195.3 157 65.0
Thhalv10023021m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 3.5e-48 195.3 156 65.4
Lalb_Chr16g0377261 Lupinus albus HOM05D003687 ORTHO05D004571 3.5e-48 195.3 157 65.0
MD15G1233200 Malus domestica HOM05D003687 ORTHO05D004571 3.5e-48 195.3 157 64.3
TPR.G25131 Trifolium pratense HOM05D003687 ORTHO05D004571 3.5e-48 195.3 157 65.6
AL7G15520 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 4.5e-48 194.9 157 64.3
ECA233G3718 Erigeron canadensis HOM05D003687 ORTHO05D004571 4.5e-48 194.9 160 65.0
PSO063G5755 Papaver somniferum HOM05D003687 ORTHO05D004571 4.5e-48 194.9 157 64.3
TWI53G1012 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 4.5e-48 194.9 157 63.1
Potri.005G099900 Populus trichocarpa HOM05D003687 ORTHO05D004571 5.9e-48 194.5 157 64.3
MSTRG.3621 Avicennia marina HOM05D003687 ORTHO05D004571 1.0e-47 193.7 157 64.3
Gorai.001G198400 Gossypium raimondii HOM05D003687 ORTHO05D004571 1.0e-47 193.7 157 64.3
Lj2g0026838 Lotus japonicus HOM05D003687 ORTHO05D004571 1.0e-47 193.7 157 63.7
SEGI_09550 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 1.0e-47 193.7 157 65.0
PGSC0003DMG400001524 Solanum tuberosum HOM05D003687 ORTHO05D004571 1.0e-47 193.7 157 65.0
MD02G1119200 Malus domestica HOM05D003687 ORTHO05D004571 1.3e-47 193.4 157 63.7
Phvul.003G269100 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 1.3e-47 193.4 157 63.7
Sed0005072 Sechium edule HOM05D003687 ORTHO05D004571 1.3e-47 193.4 180 57.8
TAR628G0600 Trochodendron aralioides HOM05D003687 ORTHO05D004571 1.3e-47 193.4 157 64.3
Atru.chr3.957 Acer truncatum HOM05D003687 ORTHO05D004571 1.7e-47 193.0 157 63.7
Atru.chr3.969 Acer truncatum HOM05D003687 ORTHO05D004571 1.7e-47 193.0 157 63.7
Gohir.A07G170700 Gossypium hirsutum HOM05D003687 ORTHO05D004571 1.7e-47 193.0 157 63.7
Thecc.01G007000 Theobroma cacao HOM05D003687 ORTHO05D004571 1.7e-47 193.0 157 63.7
Eucgr.I02231 Eucalyptus grandis HOM05D003687 ORTHO05D004571 2.2e-47 192.6 157 65.0
Thhalv10025259m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 2.2e-47 192.6 157 63.7
Nitab4.5_0002967g0020 Nicotiana tabacum HOM05D003687 ORTHO05D004571 2.2e-47 192.6 157 65.0
Solyc02g082830.3 Solanum lycopersicum HOM05D003687 ORTHO05D004571 2.2e-47 192.6 157 64.3
Sopen02g027630 Solanum pennellii HOM05D003687 ORTHO05D004571 2.2e-47 192.6 157 64.3
arahy.Tifrunner.gnm1.ann1.XW297T Arachis hypogaea HOM05D003687 ORTHO05D004571 2.9e-47 192.2 157 64.3
arahy.Tifrunner.gnm1.ann1.ZVTH8F Arachis hypogaea HOM05D003687 ORTHO05D004571 2.9e-47 192.2 157 64.3
Nitab4.5_0000702g0080 Nicotiana tabacum HOM05D003687 ORTHO05D004571 2.9e-47 192.2 157 65.0
Ciclev10025659m.g Citrus clementina HOM05D003687 ORTHO05D004571 3.8e-47 191.8 157 63.1
DCAR_030822 Daucus carota HOM05D003687 ORTHO05D004571 3.8e-47 191.8 157 65.0
Sabra05G0082600 Salix brachista HOM05D003687 ORTHO05D004571 3.8e-47 191.8 157 63.7
PGR119G1501 Punica granatum HOM05D003687 ORTHO05D004571 5.0e-47 191.4 157 63.1
Sp7g33400 Schrenkiella parvula HOM05D003687 ORTHO05D004571 5.0e-47 191.4 157 63.7
SGA_v2.0_scaffold2G00959 Striga asiatica HOM05D003687 ORTHO05D004571 6.5e-47 191.0 157 63.1
EL10Ac6g15469 Beta vulgaris HOM05D003687 ORTHO05D004571 8.5e-47 190.7 157 63.7
Carub.0007s0467 Capsella rubella HOM05D003687 ORTHO05D004571 8.5e-47 190.7 157 63.1
Lj4P233T12 Lonicera japonica HOM05D003687 ORTHO05D004571 8.5e-47 190.7 157 63.7
SalBow3G3833 Salvia bowleyana HOM05D003687 ORTHO05D004571 8.5e-47 190.7 157 63.1
CDE10G0671 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 1.1e-46 190.3 157 64.3
BcaB03g12420 Brassica carinata HOM05D003687 ORTHO05D004571 1.9e-46 189.5 157 63.7
CDE10G0952 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 1.9e-46 189.5 157 63.7
Duzib264G0784 Durio zibethinus HOM05D003687 ORTHO05D004571 1.9e-46 189.5 157 61.8
COL.COLO4_22538 Corchorus olitorius HOM05D003687 ORTHO05D004571 2.5e-46 189.1 157 61.1
unitig_699.g19680 Utricularia gibba HOM05D003687 ORTHO05D004571 2.5e-46 189.1 157 63.7
Gohir.D07G177500 Gossypium hirsutum HOM05D003687 ORTHO05D004571 3.2e-46 188.7 157 63.1
CSS0005640 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 4.2e-46 188.3 121 75.2
MBI05_g40602_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 4.2e-46 188.3 157 63.7
VMungo0251G3174 Vigna mungo HOM05D003687 ORTHO05D004571 4.2e-46 188.3 157 62.4
CAN.G890.77 Capsicum annuum HOM05D003687 ORTHO05D004571 5.5e-46 188.0 157 62.4
Sc07g0001320 Simmondsia chinensis HOM05D003687 ORTHO05D004571 5.5e-46 188.0 157 61.8
Duzib147G1246 Durio zibethinus HOM05D003687 ORTHO05D004571 9.4e-46 187.2 157 61.8
Aa31LG6G12590 Aethionema arabicum HOM05D003687 ORTHO05D004571 1.2e-45 186.8 157 63.1
ATR0329G002 Amborella trichopoda HOM05D003687 ORTHO05D004571 2.7e-45 185.7 157 61.8
Migut.H02194 Erythranthe guttata HOM05D003687 ORTHO05D004571 4.7e-45 184.9 157 61.8
SGA_v2.0_scaffold108G30984 Striga asiatica HOM05D003687 ORTHO05D004571 8.0e-45 184.1 157 61.1
SHI29483 Sapria himalayana HOM05D003687 ORTHO05D004571 4.4e-43 178.3 158 58.2
BcaB07g31718 Brassica carinata HOM05D003687 ORTHO05D004571 6.3e-42 174.5 150 63.3
Mapoly0033s0118 Marchantia polymorpha HOM05D003687 ORTHO05D004571 9.2e-41 170.6 157 56.1
Os03g0157900 Oryza sativa ssp. japonica HOM05D003687 ORTHO05D004571 2.7e-40 169.1 158 57.6
HPP92_002248 Vanilla planifolia HOM05D003687 ORTHO05D004571 3.5e-40 168.7 157 56.7
Pp3c9_15390 Physcomitrium patens HOM05D003687 ORTHO05D004571 1.0e-39 167.2 157 54.8
Zm00001eb004390 Zea mays HOM05D003687 ORTHO05D004571 1.0e-39 167.2 158 57.6
CBR_g34176 Chara braunii HOM05D003687 ORTHO05D004571 2.9e-39 165.6 157 54.8
CBR_g54970 Chara braunii HOM05D003687 ORTHO05D004571 2.9e-39 165.6 157 54.8
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 4.3e-38 161.8 125 67.2
SMO259G0019 Selaginella moellendorffii HOM05D003687 ORTHO05D004571 4.3e-38 161.8 157 54.8
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 7.3e-38 161.0 131 67.9
QL06p053814 Quercus lobata HOM05D003687 ORTHO05D004571 2.8e-37 159.1 131 65.6
ATR0553G001 Amborella trichopoda HOM05D003687 ORTHO05D004571 6.1e-37 157.9 121 64.5
PRCOL_00000472 Prasinoderma coloniale HOM05D003687 ORTHO05D004571 9.8e-35 150.6 157 49.7
QL06p053818 Quercus lobata HOM05D003687 ORTHO05D004571 9.8e-35 150.6 114 69.3
Dinv40174 Davidia involucrata HOM05D003687 ORTHO05D004571 2.2e-34 149.4 125 63.2
BcaB07g31714 Brassica carinata HOM05D003687 ORTHO05D004571 7.8e-32 141.0 123 65.0
Dinv34003 Davidia involucrata HOM05D003687 ORTHO05D004571 1.3e-31 140.2 80 88.8
Cre07.g331550 Chlamydomonas reinhardtii HOM05D003687 ORTHO05D004571 5.0e-31 138.3 158 48.7
Actinidia17383 Actinidia chinensis HOM05D003687 ORTHO05D004571 6.6e-31 137.9 129 58.1
FAN26G0112 Fragaria x ananassa HOM05D003687 ORTHO05D004571 7.3e-30 134.4 76 85.5
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 1.8e-28 129.8 121 61.2
MBI05_g22625_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 5.2e-28 128.3 86 70.9
MCO11G731 Micromonas commoda HOM05D003687 ORTHO05D004571 8.9e-28 127.5 157 44.6
GSVIVG01006497001 Vitis vinifera HOM05D003687 ORTHO05D004571 6.0e-24 114.8 130 55.4
Haze_26462 Corylus avellana HOM05D003687 ORTHO05D004571 8.6e-23 110.9 161 42.2
SalBow2G1655 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.1e-17 94.0 105 49.5
SalBow8G1645 Salvia bowleyana HOM05D003687 ORTHO05D004571 3.2e-17 92.4 105 48.6
SEGI_08881 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 3.2e-17 92.4 72 59.7
MCO03G424 Micromonas commoda HOM05D003687 ORTHO05D049027 8.6e-15 84.3 160 31.2
SalBow7G4144 Salvia bowleyana HOM05D003687 ORTHO05D004571 2.1e-13 79.7 45 80.0
ATR0329G021 Amborella trichopoda HOM05D003687 ORTHO05D004571 8.1e-13 77.8 54 70.4
SalBow7G3504 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.1e-12 77.4 45 77.8
Dinv18127 Davidia involucrata HOM05D003687 ORTHO05D043272 9.9e-11 70.9 37 91.9
HanXRQChr09g0253801 Helianthus annuus HOM05D003687 ORTHO05D004571 1.7e-10 70.1 48 68.8
HanXRQChr02g0050301 Helianthus annuus HOM05D003687 ORTHO05D004571 2.9e-10 69.3 48 68.8
BraA06t26310Z Brassica rapa HOM05D003687 ORTHO05D043272 1.1e-09 67.4 37 94.6
TAR371G0743 Trochodendron aralioides HOM05D003687 ORTHO05D006936 5.4e-09 65.1 52 61.5
Cfa023378 Carpinus fangiana HOM05D003687 ORTHO05D004571 7.1e-09 64.7 175 27.4
Psat6g182000 Pisum sativum HOM05D002062 ORTHO05D002242 1.2e-08 63.9 42 69.0
PRCOL_00006694 Prasinoderma coloniale HOM05D003687 ORTHO05D049027 2.1e-08 63.2 167 28.1
Psat3g043760 Pisum sativum HOM05D003687 ORTHO05D018418 7.8e-08 61.2 36 75.0


User provided reference genes

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