Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv09878 Davidia involucrata HOM05D001180 ORTHO05D001055 1.5e-83 312.8 156 100.0
Dinv44751 Davidia involucrata HOM05D001180 ORTHO05D001055 1.1e-46 190.3 110 89.1
Dinv13036 Davidia involucrata HOM05D001180 ORTHO05D005675 5.0e-34 148.3 112 73.2
CSS0015771 Camellia sinensis var. sinensis HOM05D001180 ORTHO05D001055 8.5e-26 120.9 95 66.3
CSS0044642 Camellia sinensis var. sinensis HOM05D001180 ORTHO05D001055 3.2e-25 119.0 87 69.0
Nn5g29051 Nelumbo nucifera HOM05D001180 ORTHO05D001055 3.6e-24 115.5 112 56.2
Actinidia29582 Actinidia chinensis HOM05D001180 ORTHO05D001055 5.1e-23 111.7 84 67.9
Actinidia33150 Actinidia chinensis HOM05D001180 ORTHO05D001055 1.5e-22 110.2 79 69.6
Peaxi162Scf00041g00217 Petunia axillaris HOM05D001180 ORTHO05D001055 2.0e-22 109.8 94 59.6
TWI56G0565 Tripterygium wilfordii HOM05D001180 ORTHO05D001055 3.3e-22 109.0 116 52.6
Ciclev10001758m.g Citrus clementina HOM05D001180 ORTHO05D001055 9.7e-22 107.5 113 57.5
Nitab4.5_0003496g0060 Nicotiana tabacum HOM05D001180 ORTHO05D001055 2.8e-21 105.9 107 55.1
TWI36G1754 Tripterygium wilfordii HOM05D001180 ORTHO05D001055 6.3e-21 104.8 104 54.8
COL.COLO4_16447 Corchorus olitorius HOM05D001180 ORTHO05D001055 8.2e-21 104.4 111 52.3
PGSC0003DMG400009482 Solanum tuberosum HOM05D001180 ORTHO05D001055 3.1e-20 102.4 97 52.6
Thecc.08G110800 Theobroma cacao HOM05D001180 ORTHO05D001055 3.1e-20 102.4 112 50.0
Nitab4.5_0000469g0130 Nicotiana tabacum HOM05D001180 ORTHO05D001055 5.3e-20 101.7 106 52.8
Hma1.2p1_0120F.1_g057160 Hydrangea macrophylla HOM05D001180 ORTHO05D001055 1.5e-19 100.1 99 60.6
TAR628G1052 Trochodendron aralioides HOM05D001180 ORTHO05D001055 1.5e-19 100.1 112 51.8
Solyc04g072810.4 Solanum lycopersicum HOM05D001180 ORTHO05D001055 2.6e-19 99.4 100 51.0
Sopen04g028980 Solanum pennellii HOM05D001180 ORTHO05D001055 3.5e-19 99.0 100 51.0
Manes.18G069500 Manihot esculenta HOM05D001180 ORTHO05D001055 4.5e-19 98.6 111 49.5
CiPaw.06G021200 Carya illinoinensis HOM05D001180 ORTHO05D001055 7.7e-19 97.8 102 56.9
Prupe.1G512800 Prunus persica HOM05D001180 ORTHO05D001055 7.7e-19 97.8 113 51.3
MD08G1179500 Malus domestica HOM05D001180 ORTHO05D001055 1.3e-18 97.1 104 52.9
Lj4A715T33 Lonicera japonica HOM05D001180 ORTHO05D001055 2.9e-18 95.9 108 51.9
Sabra02G0073700 Salix brachista HOM05D001180 ORTHO05D001055 3.8e-18 95.5 123 47.2
MD15G1364800 Malus domestica HOM05D001180 ORTHO05D001055 8.5e-18 94.4 113 49.6
Potri.002G093400 Populus trichocarpa HOM05D001180 ORTHO05D001055 8.5e-18 94.4 103 53.4
vmacro04759 Vaccinium macrocarpon HOM05D001180 ORTHO05D001055 8.5e-18 94.4 104 51.9
Haze_00577 Corylus avellana HOM05D001180 ORTHO05D001055 1.9e-17 93.2 95 54.7
CiPaw.05G235600 Carya illinoinensis HOM05D001180 ORTHO05D001055 4.2e-17 92.0 107 50.5
MSTRG.24472 Avicennia marina HOM05D001180 ORTHO05D001055 7.2e-17 91.3 86 53.5
Aqoxy6G00579 Aquilegia oxysepala HOM05D001180 ORTHO05D001055 9.4e-17 90.9 112 47.3
QL12p036101 Quercus lobata HOM05D001180 ORTHO05D001055 9.4e-17 90.9 107 51.4
CANSAT25G2269 Cannabis sativa HOM05D001180 ORTHO05D001055 1.2e-16 90.5 101 50.5
GSVIVG01008998001 Vitis vinifera HOM05D001180 ORTHO05D001055 1.2e-16 90.5 78 60.3
Gohir.A05G228700 Gossypium hirsutum HOM05D001180 ORTHO05D001055 1.6e-16 90.1 112 47.3
Gorai.009G239300 Gossypium raimondii HOM05D001180 ORTHO05D001055 2.1e-16 89.7 112 49.1
Cfa015918 Carpinus fangiana HOM05D001180 ORTHO05D001055 2.7e-16 89.4 95 53.7
Cc10_g07510 Coffea canephora HOM05D001180 ORTHO05D001055 2.7e-16 89.4 110 47.3
Gorai.010G043500 Gossypium raimondii HOM05D001180 ORTHO05D001055 4.7e-16 88.6 113 50.4
Duzib116G0528 Durio zibethinus HOM05D001180 ORTHO05D001055 6.1e-16 88.2 113 46.0
Gohir.D05G231100 Gossypium hirsutum HOM05D001180 ORTHO05D001055 6.1e-16 88.2 112 48.2
Gohir.D06G039200 Gossypium hirsutum HOM05D001180 ORTHO05D001055 8.0e-16 87.8 113 50.4
CAN.G517.10 Capsicum annuum HOM05D001180 ORTHO05D001055 1.0e-15 87.4 81 54.3
Gohir.A06G037700 Gossypium hirsutum HOM05D001180 ORTHO05D001055 1.0e-15 87.4 113 50.4
Eucgr.F02445 Eucalyptus grandis HOM05D001180 ORTHO05D001055 1.4e-15 87.0 109 47.7
RcHm_v2.0_Chr7g0239851 Rosa chinensis HOM05D001180 ORTHO05D001055 2.3e-15 86.3 113 50.4
Atru.chr13.1257 Acer truncatum HOM05D001180 ORTHO05D001055 3.0e-15 85.9 110 43.6
Glyma.14G170800 Glycine max HOM05D001180 ORTHO05D001055 5.2e-15 85.1 112 49.1
Sc01g0000120 Simmondsia chinensis HOM05D001180 ORTHO05D001055 8.8e-15 84.3 104 49.0
Cpa.g.sc66.84 Carica papaya HOM05D001180 ORTHO05D001055 1.1e-14 84.0 113 46.9
Psat2g074240 Pisum sativum HOM05D001180 ORTHO05D001055 1.5e-14 83.6 111 48.6
arahy.Tifrunner.gnm1.ann1.4S1Z6L Arachis hypogaea HOM05D001180 ORTHO05D001055 2.0e-14 83.2 86 54.7
Duzib093G1592 Durio zibethinus HOM05D001180 ORTHO05D001055 2.0e-14 83.2 114 45.6
arahy.Tifrunner.gnm1.ann1.K0LQZB Arachis hypogaea HOM05D001180 ORTHO05D001055 3.3e-14 82.4 86 54.7
FAN04G0232 Fragaria x ananassa HOM05D001180 ORTHO05D001055 3.3e-14 82.4 107 49.5
FAN13G2392 Fragaria x ananassa HOM05D001180 ORTHO05D001055 3.3e-14 82.4 107 49.5
Glyma.13G087900 Glycine max HOM05D001180 ORTHO05D001055 3.3e-14 82.4 112 46.4
Phvul.008G171700 Phaseolus vulgaris HOM05D001180 ORTHO05D001055 5.7e-14 81.6 110 44.5
Lalb_Chr10g0102221 Lupinus albus HOM05D001180 ORTHO05D001055 7.4e-14 81.3 111 41.4
SGA_v2.0_scaffold315G48375 Striga asiatica HOM05D001180 ORTHO05D001055 7.4e-14 81.3 95 47.4
MBI05_g34464_MAGBIO Magnolia biondii HOM05D001180 ORTHO05D001055 1.7e-13 80.1 111 43.2
TPR.G31687 Trifolium pratense HOM05D001180 ORTHO05D001055 1.7e-13 80.1 108 48.1
VMungo0647G2260 Vigna mungo HOM05D001180 ORTHO05D001055 1.7e-13 80.1 79 51.9
FAN08G3067 Fragaria x ananassa HOM05D001180 ORTHO05D001055 2.2e-13 79.7 98 52.0
Potri.005G168100 Populus trichocarpa HOM05D001180 ORTHO05D001055 2.2e-13 79.7 78 57.7
Ca_26521_v3 Cicer arietinum L. HOM05D001180 ORTHO05D001055 3.7e-13 79.0 97 49.5
PGR044G1231 Punica granatum HOM05D001180 ORTHO05D001055 8.2e-13 77.8 105 42.9
Lj1g0010924 Lotus japonicus HOM05D001180 ORTHO05D001055 1.1e-12 77.4 112 44.6
Medtr5g062310 Medicago truncatula HOM05D001180 ORTHO05D001055 1.1e-12 77.4 86 52.3
PSO541G5585 Papaver somniferum HOM05D001180 ORTHO05D001055 1.1e-12 77.4 107 43.0
CDE06G0496 Ceratophyllum demersum HOM05D001180 ORTHO05D001055 1.4e-12 77.0 110 40.9
AUR62027723 Chenopodium quinoa HOM05D001180 ORTHO05D001055 1.4e-12 77.0 104 45.2
FAN18G4481 Fragaria x ananassa HOM05D001180 ORTHO05D001055 3.1e-12 75.9 115 42.6
TAR376G1211 Trochodendron aralioides HOM05D001180 ORTHO05D001055 4.1e-12 75.5 110 48.2
PSO133G0083 Papaver somniferum HOM05D001180 ORTHO05D001055 5.3e-12 75.1 99 42.4
MSTRG.22138 Avicennia marina HOM05D001180 ORTHO05D001055 9.1e-12 74.3 92 46.7
Medtr3g074050 Medicago truncatula HOM05D001180 ORTHO05D001055 9.1e-12 74.3 107 43.0
TPR.G35203 Trifolium pratense HOM05D001180 ORTHO05D001055 9.1e-12 74.3 86 53.5
MBI02_g30894_MAGBIO Magnolia biondii HOM05D001180 ORTHO05D001055 2.0e-11 73.2 111 39.6
Sc01g0000240 Simmondsia chinensis HOM05D001180 ORTHO05D001055 2.0e-11 73.2 103 44.7
Glyma.06G105500 Glycine max HOM05D001180 ORTHO05D001055 3.5e-11 72.4 42 71.4
FvH4_5g37870 Fragaria vesca HOM05D001180 ORTHO05D001055 4.5e-11 72.0 122 41.0
Zm00001eb194240 Zea mays HOM05D001180 ORTHO05D001055 7.7e-11 71.2 106 38.7
vmacro21233 Vaccinium macrocarpon HOM05D001180 ORTHO05D001055 1.0e-10 70.9 55 65.5
arahy.Tifrunner.gnm1.ann1.FTVA6C Arachis hypogaea HOM05D001180 ORTHO05D001055 1.3e-10 70.5 76 53.9
arahy.Tifrunner.gnm1.ann1.J2GFEF Arachis hypogaea HOM05D001180 ORTHO05D001055 1.3e-10 70.5 76 53.9
Psat5g136800 Pisum sativum HOM05D001180 ORTHO05D001055 1.3e-10 70.5 77 48.1
Ca_15233_v3 Cicer arietinum L. HOM05D001180 ORTHO05D001055 1.7e-10 70.1 55 56.4
Glyma.04G104400 Glycine max HOM05D001180 ORTHO05D001055 1.7e-10 70.1 85 49.4
Lj1g0027366 Lotus japonicus HOM05D001180 ORTHO05D001055 1.7e-10 70.1 48 64.6
MELO3C010421.2 Cucumis melo HOM05D001180 ORTHO05D001055 2.2e-10 69.7 84 44.0
CDE03G0116 Ceratophyllum demersum HOM05D000276 ORTHO05D006204 2.9e-10 69.3 86 40.7
Lalb_Chr11g0065521 Lupinus albus HOM05D001180 ORTHO05D001055 3.8e-10 68.9 81 48.1
Glyma.04G104300 Glycine max HOM05D001180 ORTHO05D001055 5.0e-10 68.6 42 66.7
Phvul.009G029100 Phaseolus vulgaris HOM05D001180 ORTHO05D001055 5.0e-10 68.6 78 51.3
Migut.O00461 Erythranthe guttata HOM05D001180 ORTHO05D001055 6.5e-10 68.2 79 48.1
VMungo1309G1086 Vigna mungo HOM05D001180 ORTHO05D001055 6.5e-10 68.2 82 52.4
Rhsim06G0084800 Rhododendron simsii HOM05D001180 ORTHO05D001055 1.1e-09 67.4 55 61.8
ClCG11G015390 Citrullus lanatus HOM05D001180 ORTHO05D001055 1.5e-09 67.0 83 42.2
Os02g0752000 Oryza sativa ssp. japonica HOM05D001180 ORTHO05D001055 1.9e-09 66.6 56 53.6
SalBow3G1272 Salvia bowleyana HOM05D001180 ORTHO05D001055 2.5e-09 66.2 80 46.2
Hund26949 Selenicereus undatus HOM05D001180 ORTHO05D001055 3.2e-09 65.9 114 38.6
Ah.05g170290 Amaranthus hybridus HOM05D001180 ORTHO05D001055 4.2e-09 65.5 42 66.7
EL10Ac1g01259 Beta vulgaris HOM05D001180 ORTHO05D001055 4.2e-09 65.5 118 37.3
CsaV3_4G028710 Cucumis sativus L. HOM05D001180 ORTHO05D001055 5.5e-09 65.1 83 43.4
VMungo1309G2975 Vigna mungo HOM05D001180 ORTHO05D001055 5.5e-09 65.1 41 70.7
Prupe.7G025600 Prunus persica HOM05D001180 ORTHO05D001055 9.4e-09 64.3 105 40.0
Phvul.009G029200 Phaseolus vulgaris HOM05D001180 ORTHO05D001055 2.1e-08 63.2 40 67.5
VMungo1309G1238 Vigna mungo HOM05D001180 ORTHO05D001055 2.1e-08 63.2 36 77.8
MD14G1013100 Malus domestica HOM05D001180 ORTHO05D001055 4.7e-08 62.0 45 60.0
MD12G1015100 Malus domestica HOM05D001180 ORTHO05D001055 6.1e-08 61.6 110 41.8
Manes.09G134200 Manihot esculenta HOM05D001180 ORTHO05D001055 1.0e-07 60.8 109 37.6
CSS0020070 Camellia sinensis var. sinensis HOM05D001180 ORTHO05D001055 1.8e-07 60.1 38 68.4
CDE10G1126 Ceratophyllum demersum HOM05D001180 ORTHO05D001055 3.0e-07 59.3 94 41.5
Hma1.2p1_1316F.1_g275180 Hydrangea macrophylla HOM05D001180 ORTHO05D001055 3.0e-07 59.3 100 39.0
Hma1.2p1_3272F.1_g334800 Hydrangea macrophylla HOM05D001180 ORTHO05D001055 3.0e-07 59.3 100 39.0
BraA03t12031Z Brassica rapa HOM05D001180 ORTHO05D001055 4.0e-07 58.9 37 64.9
DCAR_008713 Daucus carota HOM05D001180 ORTHO05D001055 4.0e-07 58.9 102 42.2
GSVIVG01029895001 Vitis vinifera HOM05D001180 ORTHO05D001055 4.0e-07 58.9 45 55.6
ECA246G3645 Erigeron canadensis HOM05D001180 ORTHO05D001055 5.2e-07 58.5 54 51.9
Lalb_Chr23g0270661 Lupinus albus HOM05D001180 ORTHO05D028289 6.7e-07 58.2 54 51.9
RhsimUnG0022800 Rhododendron simsii HOM05D001180 ORTHO05D001055 6.7e-07 58.2 96 36.5
Sed0005761 Sechium edule HOM05D001180 ORTHO05D001055 8.8e-07 57.8 87 40.2
BcaC01g04756 Brassica carinata HOM05D001180 ORTHO05D001055 1.2e-06 57.4 37 64.9
A03p28230 Brassica napus HOM05D001180 ORTHO05D001055 1.2e-06 57.4 37 62.2
C03p34130 Brassica napus HOM05D001180 ORTHO05D001055 1.2e-06 57.4 37 64.9
BolC3t15722H Brassica oleracea HOM05D001180 ORTHO05D001055 1.2e-06 57.4 37 64.9
Dinv37046 Davidia involucrata HOM05D001180 ORTHO05D001055 1.2e-06 57.4 45 57.8
Zm00001eb128290 Zea mays HOM05D001180 ORTHO05D001055 1.2e-06 57.4 76 40.8
CAN.G959.42 Capsicum annuum HOM05D001180 ORTHO05D001055 1.5e-06 57.0 111 34.2
Aa31LG9G14550 Aethionema arabicum HOM05D001180 ORTHO05D001055 2.0e-06 56.6 94 35.1
DCAR_009090 Daucus carota HOM05D001180 ORTHO05D001055 2.0e-06 56.6 38 60.5
THA.LOC104813124 Tarenaya hassleriana HOM05D001180 ORTHO05D001055 2.0e-06 56.6 37 64.9
AT4G08690 Arabidopsis thaliana HOM05D001180 ORTHO05D001055 2.6e-06 56.2 90 43.3
CANSAT78G1700 Cannabis sativa HOM05D001180 ORTHO05D001055 2.6e-06 56.2 97 38.1
Lj1g0008087 Lotus japonicus HOM05D001180 ORTHO05D001055 2.6e-06 56.2 45 53.3
AL6G42470 Arabidopsis lyrata HOM05D001180 ORTHO05D001055 3.3e-06 55.8 99 36.4
Carub.0006s2720 Capsella rubella HOM05D001180 ORTHO05D001055 3.3e-06 55.8 99 34.3
Sp6g09090 Schrenkiella parvula HOM05D001180 ORTHO05D001055 3.3e-06 55.8 37 59.5
THA.LOC104804733 Tarenaya hassleriana HOM05D001180 ORTHO05D001055 3.3e-06 55.8 81 42.0
BcaB01g02849 Brassica carinata HOM05D001180 ORTHO05D001055 4.4e-06 55.5 37 59.5
PGSC0003DMG400007206 Solanum tuberosum HOM05D001180 ORTHO05D001055 4.4e-06 55.5 106 35.8
Atru.chr2.1603 Acer truncatum HOM05D001180 ORTHO05D001055 5.7e-06 55.1 48 56.2
Lj1g0012732 Lotus japonicus HOM05D001180 ORTHO05D001055 5.7e-06 55.1 33 72.7
Ca_03429_v3 Cicer arietinum L. HOM05D001180 ORTHO05D001055 7.5e-06 54.7 45 51.1
Thhalv10028819m.g Eutrema salsugineum HOM05D001180 ORTHO05D001055 7.5e-06 54.7 97 38.1
Lj1A1075T75 Lonicera japonica HOM05D001180 ORTHO05D001055 7.5e-06 54.7 38 60.5
HanXRQChr05g0162201 Helianthus annuus HOM05D001180 ORTHO05D001055 9.7e-06 54.3 44 54.5
Lsat_1_v5_gn_6_102241 Lactuca sativa HOM05D001180 ORTHO05D001055 9.7e-06 54.3 41 63.4
RcHm_v2.0_Chr3g0495481 Rosa chinensis HOM05D001180 ORTHO05D001055 9.7e-06 54.3 85 42.4
TPR.G23668 Trifolium pratense HOM05D001180 ORTHO05D001055 9.7e-06 54.3 45 53.3


User provided reference genes

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