Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 1.5e-265 919.1 512 100.0
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 5.5e-239 830.9 475 98.9
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 1.4e-207 726.5 396 87.4
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 2.5e-207 725.7 397 87.4
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 4.2e-207 724.9 398 88.2
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 6.1e-198 694.5 392 85.2
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 5.2e-197 691.4 399 82.7
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 2.0e-196 689.5 400 82.2
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 2.6e-196 689.1 402 84.1
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 8.0e-190 667.5 399 78.4
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 3.0e-189 665.6 401 81.3
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 6.8e-189 664.5 400 79.8
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 5.7e-188 661.4 397 81.1
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 1.7e-187 659.8 399 79.4
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 1.7e-187 659.8 402 80.3
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 4.8e-187 658.3 402 80.6
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 4.8e-187 658.3 400 79.5
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 1.4e-186 656.8 400 79.0
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 1.8e-186 656.4 400 78.8
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 7.7e-185 651.0 402 77.6
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 1.7e-184 649.8 395 78.2
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 3.8e-184 648.7 403 78.2
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 3.8e-184 648.7 395 78.2
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 8.5e-184 647.5 383 80.4
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 1.9e-183 646.4 400 78.5
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 1.9e-183 646.4 395 78.0
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 2.5e-183 646.0 403 77.4
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 2.5e-183 646.0 398 77.4
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 4.2e-183 645.2 395 77.5
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 4.2e-183 645.2 399 76.7
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 5.5e-183 644.8 396 80.1
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 4.7e-182 641.7 401 77.6
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 1.8e-181 639.8 392 79.3
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 2.3e-181 639.4 392 77.0
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 4.0e-181 638.6 401 76.8
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 6.8e-181 637.9 382 79.3
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 6.8e-181 637.9 399 76.7
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 8.8e-181 637.5 397 76.6
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 2.0e-180 636.3 363 82.6
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 1.3e-179 633.6 396 76.8
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 2.2e-179 632.9 403 77.2
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 2.8e-179 632.5 398 75.9
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 8.3e-179 630.9 397 76.1
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 5.4e-178 628.2 381 77.7
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 1.2e-177 627.1 397 75.3
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 2.7e-177 625.9 417 72.9
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 3.5e-177 625.5 380 77.6
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 4.5e-177 625.2 384 76.3
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 1.3e-176 623.6 401 74.1
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 1.3e-176 623.6 400 74.2
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 2.9e-176 622.5 386 75.9
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 6.6e-176 621.3 391 76.2
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 8.6e-176 620.9 394 75.6
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 1.1e-175 620.5 395 75.4
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 1.5e-175 620.2 399 75.7
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 1.5e-175 620.2 404 72.8
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 4.3e-175 618.6 397 74.6
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 4.3e-175 618.6 385 75.6
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 6.1e-174 614.8 395 74.2
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 6.8e-173 611.3 416 70.9
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 7.5e-172 607.8 335 85.7
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 4.9e-171 605.1 421 74.1
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 6.4e-171 604.7 404 73.8
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 1.1e-170 604.0 402 72.1
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 3.2e-170 602.4 401 71.6
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 5.9e-169 598.2 392 74.0
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 1.7e-168 596.7 382 75.1
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 5.6e-167 591.7 404 71.3
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 1.2e-166 590.5 388 72.4
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 4.7e-166 588.6 435 68.5
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 6.2e-166 588.2 381 73.2
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 1.0e-165 587.4 381 73.5
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 1.8e-165 586.6 381 73.5
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 4.0e-165 585.5 381 73.2
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 8.9e-165 584.3 382 73.3
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 2.0e-164 583.2 380 73.4
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 4.9e-163 578.6 381 72.4
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 4.9e-163 578.6 368 74.2
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 6.4e-163 578.2 381 73.0
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 3.2e-162 575.9 361 77.0
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 4.1e-162 575.5 393 71.2
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 3.9e-160 568.9 373 75.3
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 6.6e-160 568.2 368 69.6
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 1.1e-159 567.4 334 79.0
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 1.5e-159 567.0 334 79.3
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 2.5e-159 566.2 368 70.9
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 4.7e-158 562.0 434 65.4
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 1.4e-157 560.5 394 69.8
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 1.7e-152 543.5 398 67.6
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 8.1e-150 534.6 394 68.8
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 3.4e-148 529.3 334 75.4
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 6.0e-145 518.5 318 76.4
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 5.1e-144 515.4 395 65.1
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 3.6e-142 509.2 375 68.3
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 8.1e-142 508.1 381 66.4
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 5.2e-141 505.4 281 85.4
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 6.9e-141 505.0 382 64.7
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 1.2e-137 494.2 360 68.3
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 3.3e-135 486.1 398 62.8
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 5.8e-132 475.3 398 62.3
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 1.3e-131 474.2 398 61.3
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 7.1e-130 468.4 386 64.2
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 5.1e-128 462.2 358 62.3
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 4.0e-125 452.6 274 80.3
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 1.0e-120 438.0 399 59.4
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 4.0e-117 426.0 276 75.0
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 1.3e-99 367.9 217 77.9
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 8.5e-99 365.2 209 81.8
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 6.7e-96 355.5 294 63.6
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 3.1e-93 346.7 242 71.1
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 3.1e-93 346.7 396 44.4
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 3.4e-92 343.2 361 49.6
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 1.0e-88 331.6 401 44.4
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 1.3e-83 314.7 175 86.3
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 1.8e-80 304.3 172 83.7
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 5.0e-75 286.2 194 71.1
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 6.5e-75 285.8 191 71.7
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 7.2e-74 282.3 186 72.0
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 2.1e-73 280.8 192 70.8
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 2.1e-73 280.8 279 48.4
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 1.7e-70 271.2 198 65.2
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 4.5e-68 263.1 169 76.9
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 7.3e-58 229.2 173 65.3
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 4.4e-55 219.9 292 42.5
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 2.4e-45 187.6 237 47.7
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 4.7e-41 173.3 95 84.2
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 1.1e-37 162.2 126 65.9
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 3.0e-35 154.1 225 43.1
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 1.5e-34 151.8 88 76.1
CAN.G403.12 Capsicum annuum HOM05D005258 ORTHO05D006525 6.8e-32 142.9 112 61.6
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 2.7e-28 131.0 75 81.3
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 1.5e-26 125.2 364 31.3
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 1.3e-22 112.1 63 85.7
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 3.2e-21 107.5 129 46.5
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 6.2e-17 93.2 55 80.0
CAN.G1538.6 Capsicum annuum HOM05D005258 ORTHO05D006525 1.5e-15 88.6 71 64.8
Lsat_1_v5_gn_3_46621 Lactuca sativa HOM05D005258 ORTHO05D006525 9.9e-15 85.9 63 66.7
MCO01G624 Micromonas commoda HOM05D005258 ORTHO05D006525 1.3e-11 75.5 271 26.2
Lsat_1_v5_gn_7_20901 Lactuca sativa HOM05D005258 ORTHO05D006525 3.3e-10 70.9 38 76.3
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 3.7e-09 67.4 81 39.5
SalBow6G4442 Salvia bowleyana HOM05D005258 ORTHO05D010875 2.4e-08 64.7 39 69.2
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 9.0e-08 62.8 49 65.3
SalBow1G0607 Salvia bowleyana HOM05D005258 ORTHO05D362423 2.0e-07 61.6 81 42.0
Lsat_1_v5_gn_3_115920 Lactuca sativa HOM05D005258 ORTHO05D006525 2.6e-07 61.2 61 52.5


User provided reference genes

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