Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv09663 Davidia involucrata HOM05D007204 ORTHO05D008593 2.1e-132 475.7 247 100.0
Actinidia32616 Actinidia chinensis HOM05D007204 ORTHO05D008593 1.5e-77 293.5 252 62.3
GSVIVG01024663001 Vitis vinifera HOM05D007204 ORTHO05D008593 1.8e-75 286.6 237 67.5
Atru.chr3.4133 Acer truncatum HOM05D007204 ORTHO05D008593 3.6e-71 272.3 229 65.5
CiPaw.14G055100 Carya illinoinensis HOM05D007204 ORTHO05D008593 3.6e-71 272.3 249 61.0
TWI31G1133 Tripterygium wilfordii HOM05D007204 ORTHO05D008593 3.6e-71 272.3 239 61.5
QL01p040026 Quercus lobata HOM05D007204 ORTHO05D008593 4.0e-70 268.9 236 64.4
Nn2g10986 Nelumbo nucifera HOM05D007204 ORTHO05D008593 1.2e-69 267.3 240 60.4
Rhsim13G0065200 Rhododendron simsii HOM05D007204 ORTHO05D008593 1.4e-67 260.4 310 51.0
Duzib168G0028 Durio zibethinus HOM05D007204 ORTHO05D008593 5.4e-67 258.5 243 58.8
Prupe.6G050500 Prunus persica HOM05D007204 ORTHO05D008593 5.4e-67 258.5 246 56.5
Potri.001G281500 Populus trichocarpa HOM05D007204 ORTHO05D008593 2.7e-66 256.1 232 62.1
Cc01_g14730 Coffea canephora HOM05D007204 ORTHO05D008593 3.9e-65 252.3 239 57.3
FAN16G2350 Fragaria x ananassa HOM05D007204 ORTHO05D008593 9.5e-64 247.7 241 56.8
PSO339G1295 Papaver somniferum HOM05D007204 ORTHO05D008593 9.5e-64 247.7 242 57.4
Nitab4.5_0007880g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 1.6e-63 246.9 238 58.0
FAN25G1877 Fragaria x ananassa HOM05D007204 ORTHO05D008593 3.6e-63 245.7 241 56.8
PGR102G0940 Punica granatum HOM05D007204 ORTHO05D008593 4.7e-63 245.4 234 56.0
RcHm_v2.0_Chr5g0071301 Rosa chinensis HOM05D007204 ORTHO05D008593 1.4e-62 243.8 241 56.8
Thecc.09G355900 Theobroma cacao HOM05D007204 ORTHO05D008593 1.8e-62 243.4 240 55.8
FvH4_3g39530 Fragaria vesca HOM05D007204 ORTHO05D008593 2.3e-62 243.0 241 56.4
TPR.G32886 Trifolium pratense HOM05D007204 ORTHO05D008593 1.2e-61 240.7 245 55.9
Hma1.2p1_0841F.1_g226930 Hydrangea macrophylla HOM05D007204 ORTHO05D008593 2.0e-61 240.0 165 77.6
Psat5g153840 Pisum sativum HOM05D007204 ORTHO05D008593 4.4e-61 238.8 242 56.6
MD11G1063300 Malus domestica HOM05D007204 ORTHO05D008593 7.5e-61 238.0 240 55.4
PGSC0003DMG400030457 Solanum tuberosum HOM05D007204 ORTHO05D008593 2.2e-60 236.5 235 55.7
Sed0020276 Sechium edule HOM05D007204 ORTHO05D008593 4.9e-60 235.3 237 53.2
Lsat_1_v5_gn_9_18401 Lactuca sativa HOM05D007204 ORTHO05D008593 6.4e-60 235.0 236 56.4
Phvul.006G073000 Phaseolus vulgaris HOM05D007204 ORTHO05D008593 3.2e-59 232.6 238 54.2
Ciclev10029273m.g Citrus clementina HOM05D007204 ORTHO05D008593 4.1e-59 232.3 208 58.7
Gohir.D03G142400 Gossypium hirsutum HOM05D007204 ORTHO05D008593 3.5e-58 229.2 227 55.1
PSO801G0770 Papaver somniferum HOM05D007204 ORTHO05D008593 3.5e-58 229.2 242 53.7
HanXRQChr08g0229231 Helianthus annuus HOM05D007204 ORTHO05D008593 7.8e-58 228.0 234 55.1
Gorai.003G149500 Gossypium raimondii HOM05D007204 ORTHO05D008593 1.3e-57 227.3 227 54.6
Manes.17G034600 Manihot esculenta HOM05D007204 ORTHO05D008593 1.3e-57 227.3 225 55.6
VMungo0540G1924 Vigna mungo HOM05D007204 ORTHO05D008593 1.3e-57 227.3 218 56.9
COL.COLO4_11129 Corchorus olitorius HOM05D007204 ORTHO05D008593 1.7e-57 226.9 233 54.5
Peaxi162Scf00390g00079 Petunia axillaris HOM05D007204 ORTHO05D008593 6.6e-57 224.9 245 53.9
Lj6g0005890 Lotus japonicus HOM05D007204 ORTHO05D008593 1.9e-56 223.4 228 54.8
Cfa011760 Carpinus fangiana HOM05D007204 ORTHO05D008593 5.6e-56 221.9 215 60.5
TAR623G0341 Trochodendron aralioides HOM05D007204 ORTHO05D008593 7.3e-56 221.5 191 64.9
Sc21g0005220 Simmondsia chinensis HOM05D007204 ORTHO05D008593 2.1e-55 219.9 221 57.5
CANSAT54G2573 Cannabis sativa HOM05D007204 ORTHO05D008593 3.6e-55 219.2 210 59.0
Migut.N00766 Erythranthe guttata HOM05D007204 ORTHO05D008593 3.1e-54 216.1 237 50.6
DCAR_012274 Daucus carota HOM05D007204 ORTHO05D008593 8.9e-54 214.5 184 62.5
AUR62009682 Chenopodium quinoa HOM05D007204 ORTHO05D008593 9.9e-53 211.1 222 54.1
ClCG03G000270 Citrullus lanatus HOM05D007204 ORTHO05D008593 9.9e-53 211.1 249 49.8
arahy.Tifrunner.gnm1.ann1.QCA2Y7 Arachis hypogaea HOM05D007204 ORTHO05D008593 1.3e-52 210.7 257 48.2
MELO3C026086.2 Cucumis melo HOM05D007204 ORTHO05D008593 8.4e-52 208.0 239 50.6
arahy.Tifrunner.gnm1.ann1.IVNQ32 Arachis hypogaea HOM05D007204 ORTHO05D008593 1.4e-51 207.2 268 46.3
MBI03_g33621_MAGBIO Magnolia biondii HOM05D007204 ORTHO05D008593 2.4e-51 206.5 288 44.8
FAN11G3207 Fragaria x ananassa HOM05D007204 ORTHO05D008593 3.2e-51 206.1 211 55.5
Nitab4.5_0009741g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 4.1e-51 205.7 295 44.7
CsaV3_1G015330 Cucumis sativus L. HOM05D007204 ORTHO05D008593 3.5e-50 202.6 231 49.8
Eucgr.B03990 Eucalyptus grandis HOM05D007204 ORTHO05D008593 3.5e-50 202.6 236 47.9
Carub.0001s0635 Capsella rubella HOM05D007204 ORTHO05D008593 3.9e-49 199.1 236 46.6
SGA_v2.0_scaffold146G36125 Striga asiatica HOM05D007204 ORTHO05D008593 3.9e-49 199.1 234 49.6
Oeu034090.2 Olea europaea HOM05D007204 ORTHO05D008593 5.1e-49 198.7 246 48.8
MSTRG.9779 Avicennia marina HOM05D007204 ORTHO05D008593 8.6e-49 198.0 237 45.1
Aqoxy2G00798 Aquilegia oxysepala HOM05D007204 ORTHO05D008593 1.1e-48 197.6 184 55.4
ECA247G3086 Erigeron canadensis HOM05D007204 ORTHO05D008593 1.9e-48 196.8 342 39.2
FAN21G2638 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.9e-48 196.8 188 57.4
AL1G17180 Arabidopsis lyrata HOM05D007204 ORTHO05D008593 5.6e-48 195.3 235 46.4
CARHR006750 Cardamine hirsuta HOM05D007204 ORTHO05D008593 7.3e-48 194.9 248 46.4
AT1G07060 Arabidopsis thaliana HOM05D007204 ORTHO05D008593 9.6e-48 194.5 234 46.6
THA.LOC104800761 Tarenaya hassleriana HOM05D007204 ORTHO05D008593 1.4e-46 190.7 241 46.5
BcaC05g24670 Brassica carinata HOM05D007204 ORTHO05D008593 3.1e-46 189.5 243 45.3
Medtr3g031680 Medicago truncatula HOM05D007204 ORTHO05D008593 4.0e-46 189.1 186 54.3
Medtr3g031720 Medicago truncatula HOM05D007204 ORTHO05D008593 8.9e-46 188.0 195 53.3
Lj2A1091T48 Lonicera japonica HOM05D007204 ORTHO05D008593 1.2e-45 187.6 118 78.0
C05p05140 Brassica napus HOM05D007204 ORTHO05D008593 2.6e-45 186.4 243 44.4
Gohir.A03G026100 Gossypium hirsutum HOM05D007204 ORTHO05D008593 7.6e-45 184.9 180 55.6
BcaNung06767 Brassica carinata HOM05D007204 ORTHO05D008593 6.4e-44 181.8 236 44.1
AUR62001886 Chenopodium quinoa HOM05D007204 ORTHO05D008593 8.4e-44 181.4 259 45.9
HPP92_019711 Vanilla planifolia HOM05D000883 ORTHO05D002942 8.4e-44 181.4 238 44.5
A10p05600 Brassica napus HOM05D007204 ORTHO05D008593 1.1e-43 181.0 236 44.5
Sp1g05780 Schrenkiella parvula HOM05D007204 ORTHO05D008593 1.1e-43 181.0 237 43.5
Aa31LG1G8110 Aethionema arabicum HOM05D007204 ORTHO05D008593 2.1e-42 176.8 242 43.8
BcaNung06763 Brassica carinata HOM05D007204 ORTHO05D008593 1.0e-41 174.5 264 42.8
BolC5t29286H Brassica oleracea HOM05D007204 ORTHO05D008593 3.9e-41 172.6 267 40.8
Thhalv10009490m.g Eutrema salsugineum HOM05D007204 ORTHO05D008593 3.9e-41 172.6 214 46.3
BraA10t42821Z Brassica rapa HOM05D007204 ORTHO05D008593 3.3e-40 169.5 260 40.4
Solyc06g082320.4 Solanum lycopersicum HOM05D007204 ORTHO05D008593 5.6e-40 168.7 143 63.6
Glyma.18G058101 Glycine max HOM05D007204 ORTHO05D008593 6.2e-39 165.2 137 62.8
Sabra16G0175100 Salix brachista HOM05D007204 ORTHO05D008593 8.1e-39 164.9 238 46.6
SalBow2G2431 Salvia bowleyana HOM05D007204 ORTHO05D008593 4.4e-37 159.1 178 50.0
SGA_v2.0_scaffold120G32948 Striga asiatica HOM05D007204 ORTHO05D008593 1.2e-34 151.0 310 36.5
Lalb_Chr15g0083171 Lupinus albus HOM05D007204 ORTHO05D008593 1.3e-33 147.5 141 58.9
Hund18956 Selenicereus undatus HOM05D007204 ORTHO05D008593 3.9e-33 146.0 187 47.1
vmacro02927 Vaccinium macrocarpon HOM05D007204 ORTHO05D008593 3.3e-32 142.9 185 50.8
CSS0017241 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 4.3e-32 142.5 122 63.1
CSS0041349 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 1.3e-31 141.0 122 62.3
unitig_94.g28350 Utricularia gibba HOM05D007204 ORTHO05D008593 1.3e-31 141.0 225 42.2
Os12g0106100 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 1.6e-31 140.6 215 42.8
Zm00001eb195020 Zea mays HOM05D007204 ORTHO05D008593 2.1e-31 140.2 234 38.9
ATR0174G030 Amborella trichopoda HOM05D007204 ORTHO05D008593 8.1e-31 138.3 184 45.7
Os11g0106800 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 1.4e-30 137.5 223 41.3
BcaC05g24674 Brassica carinata HOM05D007204 ORTHO05D008593 2.6e-29 133.3 189 43.4
Sopen06g033710 Solanum pennellii HOM05D007204 ORTHO05D008593 7.4e-24 115.2 135 46.7
SEGI_02179 Sequoiadendron giganteum HOM05D056589 ORTHO05D008593 1.2e-21 107.8 232 31.9
SMO358G0161 Selaginella moellendorffii HOM05D007204 ORTHO05D008593 3.2e-11 73.2 233 28.3
Actinidia23207 Actinidia chinensis HOM05D007204 ORTHO05D008593 3.9e-09 66.2 59 57.6
Lalb_Chr15g0083181 Lupinus albus HOM05D007204 ORTHO05D008593 3.9e-09 66.2 61 62.3
TPR.G22099 Trifolium pratense HOM05D007204 ORTHO05D008593 5.7e-08 62.4 118 36.4
Zm00001eb025660 Zea mays HOM05D007204 ORTHO05D008593 4.8e-07 59.3 51 56.9
Ca_05090_v3 Cicer arietinum L. HOM05D007204 ORTHO05D008593 6.3e-07 58.9 86 41.9
Ca_14995_v3 Cicer arietinum L. HOM05D007204 ORTHO05D008593 6.3e-07 58.9 86 41.9
TPR.G444 Trifolium pratense HOM05D007204 ORTHO05D008593 1.1e-06 58.2 48 58.3


User provided reference genes

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