Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 1.4e-148 529.6 275 100.0
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 2.2e-146 522.3 275 98.5
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 6.5e-122 441.0 250 86.4
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 7.2e-121 437.6 249 85.9
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 1.6e-120 436.4 249 84.3
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 3.6e-120 435.3 239 85.8
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 6.1e-120 434.5 249 84.7
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 3.0e-119 432.2 248 84.7
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 6.8e-119 431.0 247 81.0
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 2.0e-118 429.5 246 85.0
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 1.7e-117 426.4 229 85.2
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 2.8e-117 425.6 253 79.8
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 6.3e-117 424.5 221 90.5
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 5.4e-116 421.4 268 78.7
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 2.9e-114 415.6 246 81.7
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 2.9e-114 415.6 246 81.7
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 3.8e-114 415.2 226 85.0
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 9.4e-113 410.6 256 75.8
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 1.2e-112 410.2 258 76.7
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 1.6e-112 409.8 244 79.9
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 2.1e-112 409.5 250 77.2
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 4.7e-112 408.3 251 78.5
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 8.0e-112 407.5 250 76.8
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 1.4e-111 406.8 229 82.1
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 5.2e-111 404.8 229 81.7
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 1.5e-110 403.3 234 80.3
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 3.4e-110 402.1 250 76.4
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 4.4e-110 401.7 250 76.4
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 7.5e-110 401.0 242 77.7
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 7.5e-110 401.0 250 76.0
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 9.8e-110 400.6 252 75.8
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 2.8e-109 399.1 243 78.2
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 3.7e-109 398.7 241 78.0
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 1.1e-108 397.1 221 83.3
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 1.1e-108 397.1 269 72.1
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 1.8e-108 396.4 239 77.4
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 4.1e-108 395.2 254 74.0
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 7.0e-108 394.4 249 80.3
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.2e-107 393.7 252 77.0
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 3.5e-107 392.1 238 77.3
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 4.5e-107 391.7 241 75.1
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 4.5e-107 391.7 268 73.1
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 5.9e-107 391.3 251 74.1
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 5.9e-107 391.3 240 79.6
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 7.7e-107 391.0 250 74.8
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 7.7e-107 391.0 248 74.6
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 1.0e-106 390.6 256 72.7
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 1.0e-106 390.6 236 78.0
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 1.3e-106 390.2 249 73.9
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 2.3e-106 389.4 242 75.2
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 2.9e-106 389.0 234 77.8
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 1.5e-105 386.7 221 81.4
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 1.9e-105 386.3 260 71.5
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 5.5e-105 384.8 251 73.7
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 7.2e-105 384.4 250 72.8
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 1.2e-104 383.6 221 81.0
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 4.7e-104 381.7 240 75.8
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 6.1e-104 381.3 252 72.6
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 6.1e-104 381.3 240 74.6
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 1.4e-103 380.2 252 72.2
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 2.3e-103 379.4 244 75.0
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 6.8e-103 377.9 249 71.9
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 1.2e-102 377.1 234 76.9
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 2.0e-102 376.3 252 73.4
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 3.4e-102 375.6 252 71.8
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 5.7e-102 374.8 227 76.2
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 9.8e-102 374.0 229 76.0
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 2.9e-101 372.5 239 74.1
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 2.4e-100 369.4 243 71.6
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 2.4e-100 369.4 239 74.1
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 2.0e-99 366.3 244 71.3
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 1.0e-98 364.0 248 69.4
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 1.3e-98 363.6 229 73.8
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 1.7e-98 363.2 281 64.4
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 2.9e-98 362.5 221 75.1
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 2.9e-98 362.5 229 73.4
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 6.6e-98 361.3 229 73.8
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 8.6e-98 360.9 237 71.7
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 1.5e-97 360.1 229 73.8
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 1.9e-97 359.8 249 68.3
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 3.3e-97 359.0 249 68.3
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 7.3e-97 357.8 241 70.1
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 1.2e-96 357.1 229 72.9
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 2.1e-96 356.3 251 67.7
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 8.0e-96 354.4 229 70.7
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 1.8e-95 353.2 301 59.8
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 9.8e-94 347.4 235 69.4
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 1.6e-91 340.1 257 65.4
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 3.0e-90 335.9 194 80.4
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 5.0e-90 335.1 262 63.0
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 5.0e-90 335.1 201 77.1
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 1.9e-89 333.2 183 89.1
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 4.3e-89 332.0 201 75.6
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 4.3e-89 332.0 275 61.8
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 4.0e-87 325.5 238 66.8
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 2.6e-86 322.8 183 83.6
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 1.3e-85 320.5 251 64.1
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 1.4e-84 317.0 252 61.9
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 1.9e-84 316.6 221 68.8
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 2.1e-83 313.2 232 64.2
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 4.6e-83 312.0 183 80.3
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 7.8e-83 311.2 208 68.8
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 1.3e-82 310.5 252 61.1
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 3.3e-81 305.8 221 64.3
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 1.1e-79 300.8 231 59.3
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 1.4e-79 300.4 230 62.2
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 1.4e-79 300.4 175 82.3
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 1.8e-79 300.1 230 62.2
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 3.4e-78 295.8 246 64.2
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 1.7e-77 293.5 230 59.1
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 2.1e-75 286.6 179 74.3
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 3.6e-72 275.8 229 59.0
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 6.2e-72 275.0 163 79.1
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 1.1e-65 254.2 193 64.8
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 8.7e-58 228.0 231 51.5
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 8.1e-56 221.5 250 51.6
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 8.4e-53 211.5 123 82.1
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 4.6e-51 205.7 309 39.8
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 6.0e-51 205.3 265 41.1
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 3.1e-47 193.0 137 64.2
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 5.3e-47 192.2 127 66.9
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 3.8e-45 186.0 127 70.9
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 6.5e-45 185.3 113 79.6
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 3.2e-44 183.0 288 39.2
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 2.7e-35 153.3 78 91.0
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 2.2e-32 143.7 116 56.9
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 6.9e-31 138.7 130 56.2
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 1.2e-30 137.9 77 83.1
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 3.4e-30 136.3 72 84.7
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 4.6e-27 125.9 193 36.3
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 2.2e-24 117.1 81 66.7
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 2.5e-20 103.6 77 66.2
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 1.8e-15 87.4 57 64.9
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 2.5e-12 77.0 96 44.8
Dinv07357 Davidia involucrata HOM05D000929 ORTHO05D004137 1.6e-06 57.8 55 89.1


User provided reference genes

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