Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv09616 Davidia involucrata HOM05D007318 ORTHO05D009289 1.3e-182 642.9 305 100.0
Rhsim03G0098000 Rhododendron simsii HOM05D007318 ORTHO05D009289 2.3e-136 489.2 282 78.7
Actinidia18618 Actinidia chinensis HOM05D007318 ORTHO05D009289 1.5e-135 486.5 287 77.0
CSS0001089 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 7.7e-132 474.2 301 71.8
CSS0042589 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 1.9e-130 469.5 301 71.4
Oeu026589.2 Olea europaea HOM05D007318 ORTHO05D009289 1.4e-125 453.4 294 70.1
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 7.7e-124 447.6 290 71.0
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 2.5e-122 442.6 296 70.9
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 2.1e-121 439.5 288 69.8
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 4.7e-121 438.3 271 73.4
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 6.1e-121 438.0 282 72.0
Atru.chr12.1022 Acer truncatum HOM05D007318 ORTHO05D009289 1.4e-120 436.8 273 72.9
Sopen11g002850 Solanum pennellii HOM05D007318 ORTHO05D009289 4.0e-120 435.3 281 71.9
Ciclev10016201m.g Citrus clementina HOM05D007318 ORTHO05D009289 6.8e-120 434.5 279 70.6
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 8.8e-120 434.1 273 71.8
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 2.6e-119 432.6 277 72.2
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 2.6e-119 432.6 274 70.8
Gorai.005G019900 Gossypium raimondii HOM05D007318 ORTHO05D009289 1.7e-118 429.9 277 71.5
Peaxi162Scf00173g00322 Petunia axillaris HOM05D007318 ORTHO05D009289 2.8e-118 429.1 267 73.8
DCAR_018980 Daucus carota HOM05D007318 ORTHO05D009289 8.3e-118 427.6 294 69.4
TWI63G0749 Tripterygium wilfordii HOM05D007318 ORTHO05D009289 1.4e-117 426.8 280 69.6
Lj2A32G32 Lonicera japonica HOM05D007318 ORTHO05D009289 3.1e-117 425.6 282 71.3
SalBow6G3105 Salvia bowleyana HOM05D007318 ORTHO05D009289 5.4e-117 424.9 292 68.2
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 9.2e-117 424.1 284 70.1
Manes.03G085100 Manihot esculenta HOM05D007318 ORTHO05D009289 7.7e-116 421.0 278 68.7
Duzib151G0977 Durio zibethinus HOM05D007318 ORTHO05D009289 6.6e-115 417.9 277 70.8
MD02G1257000 Malus domestica HOM05D007318 ORTHO05D009289 8.6e-115 417.5 277 67.9
HanXRQChr07g0194021 Helianthus annuus HOM05D007318 ORTHO05D009289 3.3e-114 415.6 272 71.0
RcHm_v2.0_Chr1g0332361 Rosa chinensis HOM05D007318 ORTHO05D009289 3.3e-114 415.6 273 68.1
Hund22276 Selenicereus undatus HOM05D007318 ORTHO05D009289 7.3e-114 414.5 271 69.0
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 9.5e-114 414.1 273 71.1
Nn7g37225 Nelumbo nucifera HOM05D007318 ORTHO05D009289 3.6e-113 412.1 277 67.9
Cc02_g09660 Coffea canephora HOM05D007318 ORTHO05D009289 4.7e-113 411.8 276 68.5
ECA238G4459 Erigeron canadensis HOM05D007318 ORTHO05D009289 4.7e-113 411.8 276 69.2
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 2.3e-112 409.5 273 68.5
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 3.4e-111 405.6 273 68.5
CANSAT56G0802 Cannabis sativa HOM05D007318 ORTHO05D009289 8.3e-110 401.0 295 65.1
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 1.8e-109 399.8 277 64.6
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 2.4e-109 399.4 278 67.3
FAN06G3353 Fragaria x ananassa HOM05D007318 ORTHO05D009289 7.0e-109 397.9 267 68.2
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 7.0e-109 397.9 273 67.4
FAN01G1304 Fragaria x ananassa HOM05D007318 ORTHO05D009289 9.2e-109 397.5 267 68.2
FvH4_7g05530 Fragaria vesca HOM05D007318 ORTHO05D009289 7.8e-108 394.4 267 67.8
Lsat_1_v5_gn_2_104460 Lactuca sativa HOM05D007318 ORTHO05D009289 8.6e-107 391.0 281 68.3
Prupe.2G075500 Prunus persica HOM05D007318 ORTHO05D009289 9.5e-106 387.5 234 76.5
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 1.2e-105 387.1 277 64.6
CsaV3_5G035390 Cucumis sativus L. HOM05D007318 ORTHO05D009289 1.6e-105 386.7 274 66.1
MBI13_g32993_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 2.8e-105 386.0 279 63.8
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 1.4e-104 383.6 277 63.5
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 3.1e-104 382.5 273 65.2
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 3.1e-104 382.5 273 65.2
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 3.1e-104 382.5 273 65.2
SGA_v2.0_scaffold13G06456 Striga asiatica HOM05D007318 ORTHO05D009289 3.1e-104 382.5 288 62.2
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 2.9e-102 375.9 275 61.8
Solyc11g006930.3 Solanum lycopersicum HOM05D007318 ORTHO05D009289 2.7e-100 369.4 227 74.9
EL10Ac4g08684 Beta vulgaris HOM05D007318 ORTHO05D009289 6.0e-100 368.2 272 62.5
Potri.010G238500 Populus trichocarpa HOM05D007318 ORTHO05D009289 1.0e-99 367.5 224 73.2
PSO384G0062 Papaver somniferum HOM05D007318 ORTHO05D009289 6.6e-99 364.8 282 60.6
TPR.G10614 Trifolium pratense HOM05D007318 ORTHO05D009289 4.3e-98 362.1 279 62.0
MELO3C012351.2 Cucumis melo HOM05D007318 ORTHO05D009289 1.4e-96 357.1 287 60.6
unitig_0.g1560 Utricularia gibba HOM05D007318 ORTHO05D009289 4.4e-95 352.1 281 57.3
Aqoxy1G02117 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 1.7e-94 350.1 277 61.4
Medtr1g050425 Medicago truncatula HOM05D007318 ORTHO05D009289 1.7e-94 350.1 308 54.9
MBI13_g44214_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 3.7e-94 349.0 276 59.1
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 4.1e-93 345.5 287 57.1
Cpa.g.sc5.264 Carica papaya HOM05D007318 ORTHO05D009289 6.0e-92 341.7 235 68.1
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 1.3e-91 340.5 224 69.6
Aqoxy1G02095 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 4.7e-89 332.0 289 57.1
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 8.9e-88 327.8 267 55.8
Psat2g020440 Pisum sativum HOM05D007318 ORTHO05D009289 8.9e-88 327.8 319 51.4
ClCG05G018410 Citrullus lanatus HOM05D007318 ORTHO05D009289 7.6e-87 324.7 274 57.7
Zm00001eb196200 Zea mays HOM05D007318 ORTHO05D009289 3.8e-86 322.4 266 57.5
Os12g0133400 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 3.5e-84 315.8 267 54.3
TAR636G1683 Trochodendron aralioides HOM05D007318 ORTHO05D009289 1.3e-83 313.9 183 80.9
ATR1096G030 Amborella trichopoda HOM05D007318 ORTHO05D009289 3.3e-82 309.3 236 60.6
Cfa011269 Carpinus fangiana HOM05D007318 ORTHO05D009289 5.8e-79 298.5 192 68.8
AUR62043602 Chenopodium quinoa HOM05D007318 ORTHO05D009289 6.6e-75 285.0 329 46.2
HPP92_018209 Vanilla planifolia HOM05D007318 ORTHO05D009289 2.8e-73 279.6 271 50.6
ClCG05G021760 Citrullus lanatus HOM05D007318 ORTHO05D009289 6.9e-72 275.0 188 67.0
AagrBONN_evm.TU.Sc2ySwM_368.1913 Anthoceros agrestis HOM05D007318 ORTHO05D009289 3.2e-69 266.2 282 45.0
Thecc.03G070600 Theobroma cacao HOM05D007318 ORTHO05D009289 1.6e-68 263.8 164 75.6
AUR62042079 Chenopodium quinoa HOM05D007318 ORTHO05D009289 3.5e-68 262.7 187 64.2
Glyma.02G164100 Glycine max HOM05D007318 ORTHO05D009289 1.0e-67 261.2 178 67.4
MSTRG.421 Avicennia marina HOM05D007318 ORTHO05D009289 6.7e-67 258.5 172 69.2
Mapoly0020s0170 Marchantia polymorpha HOM05D007318 ORTHO05D009289 1.2e-60 237.7 289 40.1
Psat6g095000 Pisum sativum HOM05D007318 ORTHO05D009289 1.3e-59 234.2 279 44.1
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 5.5e-53 212.2 250 44.4
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 2.1e-52 210.3 135 68.9
Pp3c5_16220 Physcomitrium patens HOM05D007318 ORTHO05D009289 1.5e-50 204.1 229 44.5
PRCOL_00002097 Prasinoderma coloniale HOM05D007318 ORTHO05D009289 6.3e-49 198.7 278 37.4
Lsat_1_v5_gn_5_177140 Lactuca sativa HOM05D007318 ORTHO05D009289 6.5e-46 188.7 151 64.9
ClCG00G005260 Citrullus lanatus HOM05D007318 ORTHO05D009289 1.4e-45 187.6 133 61.7
SEGI_17929 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 1.3e-43 181.0 130 66.2
MBI13_g43865_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 6.7e-43 178.7 109 70.6
Dinv09612 Davidia involucrata HOM05D007318 ORTHO05D009289 5.7e-42 175.6 143 64.3
MCO07G233 Micromonas commoda HOM05D007318 ORTHO05D009289 7.9e-36 155.2 310 32.3
PGSC0003DMG400023973 Solanum tuberosum HOM05D007318 ORTHO05D009289 1.5e-34 151.0 85 81.2
SEGI_12071 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 6.3e-25 119.0 118 47.5
Cre07.g323750 Chlamydomonas reinhardtii HOM05D007318 ORTHO05D009289 1.2e-20 104.8 247 29.1
Glyma.20G074100 Glycine max HOM05D007318 ORTHO05D009289 1.8e-16 90.9 84 53.6
TAR636G1493 Trochodendron aralioides HOM05D007318 ORTHO05D009289 7.7e-15 85.5 112 44.6
Lj6g0000477 Lotus japonicus HOM05D007318 ORTHO05D009289 2.1e-12 77.4 79 50.6
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 5.2e-11 72.8 227 23.3
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 2.0e-10 70.9 197 25.9
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 4.4e-10 69.7 210 25.7
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 5.7e-10 69.3 197 25.4
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 7.5e-10 68.9 159 28.9
MBI13_g44208_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.7e-09 67.8 38 68.4
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 2.2e-09 67.4 201 24.9
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 3.7e-09 66.6 194 25.3
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 4.8e-09 66.2 202 25.2
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 6.3e-09 65.9 221 23.1
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 8.3e-09 65.5 222 23.0
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 1.1e-08 65.1 216 23.1
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 1.4e-08 64.7 200 26.5
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 1.8e-08 64.3 223 25.1
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 3.1e-08 63.5 225 24.0
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 3.1e-08 63.5 159 28.9
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 3.1e-08 63.5 207 27.5
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 4.1e-08 63.2 231 24.2
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 5.4e-08 62.8 137 27.7
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 7.0e-08 62.4 162 27.2
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 7.0e-08 62.4 184 24.5
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 7.0e-08 62.4 220 25.0
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 7.0e-08 62.4 159 28.3
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 7.0e-08 62.4 140 28.6
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 9.1e-08 62.0 184 24.5
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 9.1e-08 62.0 186 24.2
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 9.1e-08 62.0 167 25.7
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 1.2e-07 61.6 144 29.9
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 1.6e-07 61.2 220 24.5
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 1.6e-07 61.2 184 24.5
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 1.6e-07 61.2 151 27.2
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.6e-07 61.2 161 26.1
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.6e-07 61.2 151 27.2
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 1.6e-07 61.2 226 23.5
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 1.6e-07 61.2 151 26.5
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 2.0e-07 60.8 194 25.3
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 2.0e-07 60.8 178 21.9
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 2.0e-07 60.8 178 21.9
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 2.0e-07 60.8 172 27.3
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.7e-07 60.5 154 26.6
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 2.7e-07 60.5 139 28.8
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.5e-07 60.1 147 28.6
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 4.5e-07 59.7 220 22.7
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 4.5e-07 59.7 220 22.7
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 4.5e-07 59.7 174 25.9
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 4.5e-07 59.7 156 27.6
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 4.5e-07 59.7 139 29.5
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 5.9e-07 59.3 223 24.7
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 7.7e-07 58.9 143 28.7
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 7.7e-07 58.9 152 28.3
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 7.7e-07 58.9 194 21.6
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 7.7e-07 58.9 225 24.4
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 1.0e-06 58.5 177 25.4
ClCG05G021770 Citrullus lanatus HOM05D007318 ORTHO05D009289 1.3e-06 58.2 39 59.0
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 1.3e-06 58.2 217 23.0
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 1.7e-06 57.8 172 25.0
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 2.3e-06 57.4 173 28.9
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 2.3e-06 57.4 152 26.3
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 2.9e-06 57.0 221 22.2
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 2.9e-06 57.0 159 26.4
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 2.9e-06 57.0 214 23.8
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 2.9e-06 57.0 152 27.6
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 2.9e-06 57.0 108 31.5
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 2.9e-06 57.0 181 23.8
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 3.8e-06 56.6 152 27.0
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 3.8e-06 56.6 183 24.0
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 5.0e-06 56.2 164 26.8
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 5.0e-06 56.2 144 29.2


User provided reference genes

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