Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv09574 Davidia involucrata HOM05D003568 ORTHO05D004104 9.4e-284 979.5 508 100.0
Dinv27398 Davidia involucrata HOM05D003568 ORTHO05D004104 7.3e-252 873.6 532 87.8
CSS0027239 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 6.2e-235 817.4 532 81.8
vmacro13231 Vaccinium macrocarpon HOM05D003568 ORTHO05D004104 9.9e-233 810.1 531 81.7
GSVIVG01026964001 Vitis vinifera HOM05D003568 ORTHO05D004104 2.7e-230 802.0 532 81.2
Eucgr.E00099 Eucalyptus grandis HOM05D003568 ORTHO05D004104 1.0e-229 800.0 532 80.3
PGR042G3260 Punica granatum HOM05D003568 ORTHO05D004104 1.8e-226 789.3 529 80.0
Potri.014G090100 Populus trichocarpa HOM05D003568 ORTHO05D004104 5.2e-226 787.7 531 80.4
Prupe.2G177200 Prunus persica HOM05D003568 ORTHO05D004104 5.2e-226 787.7 532 79.5
MD01G1071200 Malus domestica HOM05D003568 ORTHO05D004104 6.4e-224 780.8 530 79.1
Nn1g01682 Nelumbo nucifera HOM05D003568 ORTHO05D004104 8.4e-224 780.4 532 78.2
CSS0021365 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 1.1e-223 780.0 532 78.9
CSS0044044 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 1.4e-223 779.6 532 78.9
Thecc.06G000300 Theobroma cacao HOM05D003568 ORTHO05D004104 3.2e-223 778.5 516 81.2
Potri.002G164100 Populus trichocarpa HOM05D003568 ORTHO05D004104 5.4e-223 777.7 531 79.5
Duzib205G0971 Durio zibethinus HOM05D003568 ORTHO05D004104 4.6e-222 774.6 516 81.0
Sabra14G0065400 Salix brachista HOM05D003568 ORTHO05D004104 6.0e-222 774.2 533 78.6
CiPaw.02G034600 Carya illinoinensis HOM05D003568 ORTHO05D004104 7.8e-222 773.9 531 78.7
Ciclev10018853m.g Citrus clementina HOM05D003568 ORTHO05D004104 1.0e-221 773.5 529 78.4
TAR375G0541 Trochodendron aralioides HOM05D003568 ORTHO05D004104 2.3e-221 772.3 532 77.8
CANSAT56G2290 Cannabis sativa HOM05D003568 ORTHO05D004104 1.1e-220 770.0 532 77.8
Sed0000810 Sechium edule HOM05D003568 ORTHO05D004104 1.1e-220 770.0 532 77.8
ClCG05G001260 Citrullus lanatus HOM05D003568 ORTHO05D004104 4.3e-220 768.1 543 77.2
RcHm_v2.0_Chr1g0357661 Rosa chinensis HOM05D003568 ORTHO05D004104 4.3e-220 768.1 529 77.1
Lj9A588G62 Lonicera japonica HOM05D003568 ORTHO05D004104 1.3e-219 766.5 532 77.8
CsaV3_3G008620 Cucumis sativus L. HOM05D003568 ORTHO05D004104 1.6e-219 766.1 532 78.2
MELO3C006082.2 Cucumis melo HOM05D003568 ORTHO05D004104 2.1e-219 765.8 532 77.8
Duzib068G0821 Durio zibethinus HOM05D003568 ORTHO05D004104 2.8e-219 765.4 516 80.6
MD07G1131500 Malus domestica HOM05D003568 ORTHO05D004104 3.6e-219 765.0 519 78.6
Oeu036591.1 Olea europaea HOM05D003568 ORTHO05D004104 1.1e-218 763.5 536 77.8
Thecc.03G000600 Theobroma cacao HOM05D003568 ORTHO05D004104 1.4e-218 763.1 516 79.7
FAN06G0334 Fragaria x ananassa HOM05D003568 ORTHO05D004104 1.8e-218 762.7 529 76.4
Aqoxy2G00934 Aquilegia oxysepala HOM05D003568 ORTHO05D004104 2.4e-218 762.3 532 77.1
COL.COLO4_22311 Corchorus olitorius HOM05D003568 ORTHO05D004104 2.4e-218 762.3 516 79.5
FAN01G2394 Fragaria x ananassa HOM05D003568 ORTHO05D004104 5.3e-218 761.1 529 76.4
Oeu015218.3 Olea europaea HOM05D003568 ORTHO05D004104 5.3e-218 761.1 536 77.6
FvH4_7g15330 Fragaria vesca HOM05D003568 ORTHO05D004104 6.9e-218 760.8 529 76.2
FAN03G0275 Fragaria x ananassa HOM05D003568 ORTHO05D004104 6.9e-218 760.8 529 76.2
PGSC0003DMG400005252 Solanum tuberosum HOM05D003568 ORTHO05D004104 1.2e-217 760.0 532 77.1
FAN06G4614 Fragaria x ananassa HOM05D003568 ORTHO05D004104 1.5e-217 759.6 529 76.2
TWI59G1008 Tripterygium wilfordii HOM05D003568 ORTHO05D004104 1.5e-217 759.6 532 77.3
Gohir.D12G276500 Gossypium hirsutum HOM05D003568 ORTHO05D004104 2.6e-217 758.8 516 78.9
Gorai.008G297000 Gossypium raimondii HOM05D003568 ORTHO05D004104 2.6e-217 758.8 516 78.9
HanXRQChr04g0120781 Helianthus annuus HOM05D003568 ORTHO05D004104 2.6e-217 758.8 525 76.6
QL04p055468 Quercus lobata HOM05D003568 ORTHO05D004104 4.5e-217 758.1 530 78.3
Gohir.A12G275800 Gossypium hirsutum HOM05D003568 ORTHO05D004104 7.6e-217 757.3 516 78.9
CAN.G165.6 Capsicum annuum HOM05D003568 ORTHO05D004104 9.9e-217 756.9 532 77.1
Solyc03g095410.3 Solanum lycopersicum HOM05D003568 ORTHO05D004104 1.3e-216 756.5 531 76.6
Cpa.g.sc184.32 Carica papaya HOM05D003568 ORTHO05D004104 2.2e-216 755.7 537 76.7
Sabra02G0147000 Salix brachista HOM05D003568 ORTHO05D004104 2.2e-216 755.7 559 74.8
Rhsim07G0010700 Rhododendron simsii HOM05D003568 ORTHO05D004104 3.8e-216 755.0 622 68.5
MSTRG.27756 Avicennia marina HOM05D003568 ORTHO05D004104 1.4e-215 753.1 532 75.9
Nitab4.5_0000171g0380 Nicotiana tabacum HOM05D003568 ORTHO05D004104 1.4e-215 753.1 532 76.3
Cc08_g01740 Coffea canephora HOM05D003568 ORTHO05D004104 1.9e-215 752.7 531 76.8
THA.LOC104811828 Tarenaya hassleriana HOM05D003568 ORTHO05D004104 7.1e-215 750.7 532 75.2
Manes.01G252500 Manihot esculenta HOM05D003568 ORTHO05D004104 2.7e-214 748.8 529 77.3
Sopen03g025390 Solanum pennellii HOM05D003568 ORTHO05D004104 2.7e-214 748.8 532 75.8
Atru.chr5.561 Acer truncatum HOM05D003568 ORTHO05D004104 3.5e-214 748.4 528 77.3
Atru.chr5.579 Acer truncatum HOM05D003568 ORTHO05D004104 3.5e-214 748.4 528 77.3
Peaxi162Scf00073g02118 Petunia axillaris HOM05D003568 ORTHO05D004104 1.3e-213 746.5 544 74.8
ECA236G4463 Erigeron canadensis HOM05D003568 ORTHO05D004104 1.8e-213 746.1 529 75.6
Sc03g0008850 Simmondsia chinensis HOM05D003568 ORTHO05D004104 3.9e-213 745.0 528 76.7
Manes.05G029701 Manihot esculenta HOM05D003568 ORTHO05D004104 6.7e-213 744.2 509 78.8
Lsat_1_v5_gn_7_3960 Lactuca sativa HOM05D003568 ORTHO05D004104 1.3e-211 740.0 530 74.5
Aa31LG3G14860 Aethionema arabicum HOM05D003568 ORTHO05D004104 1.6e-211 739.6 526 74.5
DCAR_006948 Daucus carota HOM05D003568 ORTHO05D004104 1.6e-211 739.6 532 75.4
AL6G23170 Arabidopsis lyrata HOM05D003568 ORTHO05D004104 2.1e-211 739.2 523 75.5
Thhalv10012686m.g Eutrema salsugineum HOM05D003568 ORTHO05D004104 3.7e-211 738.4 526 74.7
Carub.0006s1087 Capsella rubella HOM05D003568 ORTHO05D004104 8.1e-211 737.3 523 75.1
Nn6g35074 Nelumbo nucifera HOM05D003568 ORTHO05D004104 8.1e-211 737.3 532 75.2
Sp6g31270 Schrenkiella parvula HOM05D003568 ORTHO05D004104 3.1e-210 735.3 525 74.7
AT5G12370 Arabidopsis thaliana HOM05D003568 ORTHO05D004104 4.0e-210 734.9 523 75.0
EL10Ac5g12970 Beta vulgaris HOM05D003568 ORTHO05D004104 4.0e-210 734.9 516 75.8
CARHR200740 Cardamine hirsuta HOM05D003568 ORTHO05D004104 1.2e-209 733.4 525 74.5
Glyma.07G046100 Glycine max HOM05D003568 ORTHO05D004104 2.6e-209 732.3 535 75.3
Glyma.16G014200 Glycine max HOM05D003568 ORTHO05D004104 1.3e-208 729.9 538 74.0
A10p25450 Brassica napus HOM05D003568 ORTHO05D004104 2.2e-208 729.2 527 74.4
BraA10t44609Z Brassica rapa HOM05D003568 ORTHO05D004104 2.2e-208 729.2 527 74.4
C09p64520 Brassica napus HOM05D003568 ORTHO05D004104 3.8e-208 728.4 525 74.5
BolC9t59286H Brassica oleracea HOM05D003568 ORTHO05D004104 3.8e-208 728.4 525 74.5
BolC3t13154H Brassica oleracea HOM05D003568 ORTHO05D004104 6.4e-208 727.6 528 73.9
Migut.N01148 Erythranthe guttata HOM05D003568 ORTHO05D004104 1.1e-207 726.9 530 74.7
Lj3g0009129 Lotus japonicus HOM05D003568 ORTHO05D004104 1.1e-207 726.9 533 75.4
Sed0017270 Sechium edule HOM05D003568 ORTHO05D004104 3.2e-207 725.3 522 76.1
Ca_23448_v3 Cicer arietinum L. HOM05D003568 ORTHO05D004104 9.3e-207 723.8 532 74.8
SGA_v2.0_scaffold67G22717 Striga asiatica HOM05D003568 ORTHO05D004104 9.3e-207 723.8 531 75.0
PSO266G0033 Papaver somniferum HOM05D003568 ORTHO05D004104 4.6e-206 721.5 537 73.9
Gorai.006G064200 Gossypium raimondii HOM05D003568 ORTHO05D004104 6.0e-206 721.1 515 75.5
BcaB01g05405 Brassica carinata HOM05D003568 ORTHO05D004104 1.3e-205 719.9 520 74.4
BraA03t09896Z Brassica rapa HOM05D003568 ORTHO05D004104 5.1e-205 718.0 523 74.0
Gohir.D09G046200 Gossypium hirsutum HOM05D003568 ORTHO05D004104 6.7e-205 717.6 515 75.3
Nitab4.5_0004323g0080 Nicotiana tabacum HOM05D003568 ORTHO05D004104 3.3e-204 715.3 530 72.3
Hund23292 Selenicereus undatus HOM05D003568 ORTHO05D004104 4.3e-204 714.9 528 73.9
C03p06540 Brassica napus HOM05D003568 ORTHO05D004104 9.6e-204 713.8 547 71.1
Phvul.010G123000 Phaseolus vulgaris HOM05D003568 ORTHO05D004104 2.1e-203 712.6 515 75.1
Gohir.A09G045200 Gossypium hirsutum HOM05D003568 ORTHO05D004104 8.2e-203 710.7 515 74.6
Nitab4.5_0010629g0020 Nicotiana tabacum HOM05D003568 ORTHO05D004104 1.1e-202 710.3 530 71.5
Lj7A507T47 Lonicera japonica HOM05D003568 ORTHO05D004104 1.4e-202 709.9 580 69.5
PSO478G3452 Papaver somniferum HOM05D003568 ORTHO05D004104 1.8e-202 709.5 571 69.9
VMungo0331G1030 Vigna mungo HOM05D003568 ORTHO05D004104 2.4e-202 709.1 515 74.2
Psat4g164920 Pisum sativum HOM05D003568 ORTHO05D004104 3.1e-202 708.8 531 73.1
Lalb_Chr18g0044861 Lupinus albus HOM05D003568 ORTHO05D004104 1.5e-201 706.4 509 74.9
A03p05590 Brassica napus HOM05D003568 ORTHO05D004104 2.0e-201 706.1 548 70.6
Medtr8g023330 Medicago truncatula HOM05D003568 ORTHO05D004104 2.2e-200 702.6 532 73.3
Peaxi162Scf00154g00427 Petunia axillaris HOM05D003568 ORTHO05D004104 7.9e-198 694.1 562 68.0
Lalb_Chr17g0343201 Lupinus albus HOM05D003568 ORTHO05D004104 1.8e-197 693.0 523 72.1
unitig_21.g20340 Utricularia gibba HOM05D003568 ORTHO05D004104 6.7e-197 691.0 538 71.4
HPP92_003241 Vanilla planifolia HOM05D003568 ORTHO05D004104 8.7e-197 690.6 519 71.3
Haze_15562 Corylus avellana HOM05D003568 ORTHO05D004104 2.5e-196 689.1 584 67.6
arahy.Tifrunner.gnm1.ann1.PRYL24 Arachis hypogaea HOM05D003568 ORTHO05D004104 9.7e-196 687.2 511 73.2
arahy.Tifrunner.gnm1.ann1.Z56S5U Arachis hypogaea HOM05D003568 ORTHO05D004104 9.7e-196 687.2 511 73.2
COL.COLO4_15385 Corchorus olitorius HOM05D003568 ORTHO05D004104 9.4e-191 670.6 481 76.1
ATR0829G125 Amborella trichopoda HOM05D003568 ORTHO05D004104 7.9e-190 667.5 517 70.2
CAN.G45.13 Capsicum annuum HOM05D003568 ORTHO05D004104 3.7e-187 658.7 532 69.2
SEGI_32899 Sequoiadendron giganteum HOM05D003568 ORTHO05D004104 2.9e-184 649.0 535 66.5
FAN10G2437 Fragaria x ananassa HOM05D003568 ORTHO05D004104 1.2e-182 643.7 535 66.9
AUR62030738 Chenopodium quinoa HOM05D003568 ORTHO05D004104 3.6e-182 642.1 592 62.2
AUR62036376 Chenopodium quinoa HOM05D003568 ORTHO05D004104 6.1e-182 641.3 496 71.6
TPR.G21815 Trifolium pratense HOM05D003568 ORTHO05D004104 1.4e-181 640.2 482 72.8
Os12g0238100 Oryza sativa ssp. japonica HOM05D003568 ORTHO05D004104 2.3e-181 639.4 507 68.2
SalBow6G4826 Salvia bowleyana HOM05D003568 ORTHO05D004104 5.1e-181 638.3 533 67.0
Hund02118 Selenicereus undatus HOM05D003568 ORTHO05D004104 4.4e-180 635.2 518 67.8
SalBow6G0922 Salvia bowleyana HOM05D003568 ORTHO05D004104 1.7e-179 633.3 533 66.6
Solyc11g050710.2 Solanum lycopersicum HOM05D003568 ORTHO05D004104 1.8e-178 629.8 561 64.2
ECA238G2843 Erigeron canadensis HOM05D003568 ORTHO05D004104 4.5e-177 625.2 507 67.7
Lsat_1_v5_gn_3_138540 Lactuca sativa HOM05D003568 ORTHO05D004104 1.7e-176 623.2 505 65.9
Zm00001eb133590 Zea mays HOM05D003568 ORTHO05D004104 2.3e-173 612.8 507 66.1
HanXRQChr13g0415591 Helianthus annuus HOM05D003568 ORTHO05D004104 1.7e-171 606.7 521 64.9
HanXRQChr02g0038861 Helianthus annuus HOM05D003568 ORTHO05D004104 1.8e-170 603.2 521 64.7
Sed0024683 Sechium edule HOM05D003568 ORTHO05D004104 2.2e-160 569.7 530 62.6
Sopen11g021810 Solanum pennellii HOM05D003568 ORTHO05D004104 3.8e-160 568.9 532 61.7
Sopen10g009070 Solanum pennellii HOM05D003568 ORTHO05D004104 1.2e-158 563.9 532 61.1
Solyc10g019140.1 Solanum lycopersicum HOM05D003568 ORTHO05D004104 1.4e-157 560.5 500 63.8
Sopen10g009040 Solanum pennellii HOM05D003568 ORTHO05D004104 4.9e-147 525.4 567 56.3
CDE07G1174 Ceratophyllum demersum HOM05D003568 ORTHO05D004104 1.8e-146 523.5 443 64.6
Mapoly0070s0084 Marchantia polymorpha HOM05D003568 ORTHO05D004104 1.0e-144 517.7 531 56.5
AagrBONN_evm.TU.Sc2ySwM_117.807 Anthoceros agrestis HOM05D003568 ORTHO05D004104 5.0e-144 515.4 502 56.6
SMO329G0014 Selaginella moellendorffii HOM05D003568 ORTHO05D004104 1.1e-138 497.7 526 53.8
Pp3c7_5960 Physcomitrium patens HOM05D003568 ORTHO05D004104 4.3e-135 485.7 518 54.4
FAN10G2647 Fragaria x ananassa HOM05D003568 ORTHO05D004104 7.1e-122 441.8 299 77.6
Sopen10g009080 Solanum pennellii HOM05D003568 ORTHO05D004104 2.5e-119 433.3 510 53.1
TAR374G0165 Trochodendron aralioides HOM05D003568 ORTHO05D004104 7.8e-113 411.8 251 86.1
CBR_g38471 Chara braunii HOM05D003568 ORTHO05D004104 2.3e-112 410.2 561 44.0
Nitab4.5_0006926g0010 Nicotiana tabacum HOM05D003568 ORTHO05D004104 8.1e-110 401.7 523 50.7
MBI03_g34513_MAGBIO Magnolia biondii HOM05D003568 ORTHO05D004104 5.4e-98 362.5 233 80.3
Sopen00g003310 Solanum pennellii HOM05D003568 ORTHO05D004104 2.3e-96 357.1 556 44.8
AagrBONN_evm.TU.Sc2ySwM_362.1439 Anthoceros agrestis HOM05D003568 ORTHO05D004104 2.6e-92 343.6 552 40.4
Pp3c17_2120 Physcomitrium patens HOM05D003568 ORTHO05D004104 8.7e-88 328.6 501 42.3
Solyc10g019110.2 Solanum lycopersicum HOM05D003568 ORTHO05D004104 3.9e-80 303.1 337 55.5
PSO478G4032 Papaver somniferum HOM05D003568 ORTHO05D004104 2.9e-75 287.0 309 54.4
Hma1.2p1_0335F.1_g128910 Hydrangea macrophylla HOM05D003568 ORTHO05D004104 1.0e-72 278.5 156 91.0
SEGI_20614 Sequoiadendron giganteum HOM05D003568 ORTHO05D004104 4.1e-69 266.5 236 62.3
Haze_19031 Corylus avellana HOM05D003568 ORTHO05D004104 3.4e-68 263.5 280 58.6
Sopen10g009060 Solanum pennellii HOM05D003568 ORTHO05D004104 1.0e-64 251.9 230 63.0
Sopen00g004930 Solanum pennellii HOM05D003568 ORTHO05D004104 5.7e-55 219.5 205 62.0
Pp3c10_23750 Physcomitrium patens HOM05D003568 ORTHO05D004104 9.4e-50 202.2 510 30.8
HanXRQChr14g0445661 Helianthus annuus HOM05D003568 ORTHO05D004104 5.9e-44 183.0 141 63.8
PRCOL_00002354 Prasinoderma coloniale HOM05D003568 ORTHO05D004104 9.5e-34 149.1 471 29.5
Glyma.07G162100 Glycine max HOM05D003568 ORTHO05D004104 4.9e-30 136.7 83 83.1
Solyc10g019120.1 Solanum lycopersicum HOM05D003568 ORTHO05D004104 6.4e-30 136.3 145 53.1
MBI17_g30844_MAGBIO Magnolia biondii HOM05D003568 ORTHO05D004104 1.3e-27 128.6 126 58.7
MBI03_g44580_MAGBIO Magnolia biondii HOM05D003568 ORTHO05D004104 5.0e-27 126.7 126 57.9
ClCG05G001230 Citrullus lanatus HOM05D003568 ORTHO05D004104 2.1e-25 121.3 229 38.9
MBI19_g38425_MAGBIO Magnolia biondii HOM05D003568 ORTHO05D004104 2.3e-24 117.9 151 51.0
QL05p039330 Quercus lobata HOM05D003568 ORTHO05D004104 2.7e-20 104.4 105 63.8
MCO10G270 Micromonas commoda HOM05D003568 ORTHO05D004104 1.5e-18 98.6 361 24.9
Haze_11234 Corylus avellana HOM05D001460 ORTHO05D001337 9.5e-18 95.9 173 43.9
CAN.G77.8 Capsicum annuum HOM05D003568 ORTHO05D004104 1.8e-16 91.7 54 83.3
MBI14_g09475_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D004104 2.9e-14 84.3 84 59.5
MBI08_g05068_MAGBIO Magnolia biondii HOM05D003568 ORTHO05D004104 1.1e-13 82.4 84 57.1
SalBow1G6610 Salvia bowleyana HOM05D019231 ORTHO05D019643 7.1e-13 79.7 54 74.1
SEGI_24596 Sequoiadendron giganteum HOM05D003568 ORTHO05D004104 7.8e-12 76.3 81 51.9
TPR.G39543 Trifolium pratense HOM05D003568 ORTHO05D004104 1.5e-10 72.0 84 52.4
Ah.12g059250 Amaranthus hybridus HOM05D003568 ORTHO05D004104 2.1e-09 68.2 59 59.3
RcHm_v2.0_Chr1g0375601 Rosa chinensis HOM05D003568 ORTHO05D004104 2.1e-09 68.2 56 66.1
MBI19_g10189_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 1.4e-08 65.5 92 44.6
SalBow6G4266 Salvia bowleyana HOM05D019231 ORTHO05D019643 6.8e-08 63.2 51 60.8
SalBow8G2325 Salvia bowleyana HOM05D019231 ORTHO05D019643 6.8e-08 63.2 51 60.8
Rhsim09G0102900 Rhododendron simsii HOM05D001968 ORTHO05D001940 8.9e-08 62.8 40 80.0
SalBow7G3100 Salvia bowleyana HOM05D003568 ORTHO05D019643 1.5e-07 62.0 45 66.7
RcHm_v2.0_Chr1g0375661 Rosa chinensis HOM05D003568 ORTHO05D004104 2.0e-07 61.6 87 46.0
arahy.Tifrunner.gnm1.ann1.MCG0E9 Arachis hypogaea HOM05D003568 ORTHO05D004104 1.7e-06 58.5 37 78.4
SalBow5G2358 Salvia bowleyana HOM05D019231 ORTHO05D004104 1.7e-06 58.5 39 71.8
SalBow4G2543 Salvia bowleyana HOM05D003568 ORTHO05D004104 2.2e-06 58.2 39 71.8


User provided reference genes

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