Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 0.0e+00 1378.6 851 100.0
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 7.2e-228 794.7 965 56.7
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 1.7e-181 640.6 891 50.6
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 1.2e-171 607.8 965 47.7
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 7.4e-148 528.9 941 43.0
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 4.8e-147 526.2 943 43.1
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 1.7e-144 517.7 951 46.2
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 1.1e-132 478.4 926 41.9
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 6.5e-128 462.6 956 38.7
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 2.7e-126 457.2 990 38.7
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 1.5e-121 441.4 976 41.4
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 1.1e-119 435.3 928 41.1
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 1.1e-116 425.2 943 39.0
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 2.2e-115 421.0 1037 39.0
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 1.5e-113 414.8 959 39.8
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 9.4e-111 405.6 930 42.8
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 1.3e-107 395.2 905 38.3
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 1.6e-105 388.3 918 40.6
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 1.6e-102 378.3 990 35.3
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 2.8e-99 367.5 983 36.9
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 1.2e-97 362.1 937 37.5
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 4.2e-95 353.6 929 36.0
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 9.4e-95 352.4 969 34.6
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 6.1e-94 349.7 904 36.2
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 5.7e-92 343.2 959 34.5
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 3.7e-91 340.5 1061 35.1
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 2.4e-90 337.8 949 35.3
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 2.4e-90 337.8 911 39.0
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 2.4e-90 337.8 934 36.2
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 3.1e-90 337.4 960 37.1
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 7.0e-90 336.3 925 33.2
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 1.9e-87 328.2 915 38.3
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.5e-87 327.8 952 36.8
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 4.0e-85 320.5 935 40.1
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 5.7e-84 316.6 933 36.1
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 5.9e-81 306.6 946 34.0
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.4e-77 295.4 945 34.9
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 2.3e-77 294.7 1005 32.4
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 6.8e-77 293.1 962 36.9
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 8.3e-75 286.2 834 40.3
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 1.1e-74 285.8 925 33.0
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 4.1e-74 283.9 880 33.6
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 2.0e-73 281.6 923 40.1
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 2.0e-73 281.6 887 34.2
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 2.7e-73 281.2 887 34.2
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 6.0e-73 280.0 930 35.1
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 1.9e-71 275.0 942 32.8
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 5.6e-71 273.5 885 35.0
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 9.5e-71 272.7 936 34.8
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 8.1e-70 269.6 929 34.2
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 8.1e-70 269.6 926 35.1
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.8e-69 268.5 931 34.5
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 1.8e-69 268.5 941 31.6
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 2.3e-69 268.1 1000 31.8
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 6.8e-69 266.5 935 31.4
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 2.0e-68 265.0 976 34.6
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 1.4e-66 258.8 900 36.2
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 7.1e-66 256.5 915 33.0
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 7.1e-66 256.5 868 34.4
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 2.1e-65 255.0 942 30.5
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 2.5e-63 248.1 936 29.6
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 3.3e-63 247.7 920 32.9
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 7.3e-63 246.5 952 31.9
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 2.1e-62 245.0 945 31.6
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 2.8e-62 244.6 951 30.3
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 6.2e-62 243.4 937 32.7
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 2.0e-60 238.4 463 42.8
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 3.4e-60 237.7 910 32.2
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 1.7e-59 235.3 908 30.2
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 2.2e-59 235.0 918 30.8
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 2.2e-59 235.0 866 31.6
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.1e-57 228.4 867 31.4
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 2.7e-57 228.0 954 31.2
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 6.0e-57 226.9 918 30.9
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 1.3e-56 225.7 972 35.0
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 1.5e-55 222.2 918 30.6
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 2.5e-55 221.5 971 33.3
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 2.8e-54 218.0 974 29.2
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 1.4e-53 215.7 975 30.6
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 5.8e-52 210.3 939 33.9
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 7.6e-52 209.9 931 30.3
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 1.2e-49 202.6 871 29.0
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 2.1e-49 201.8 457 38.1
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 1.0e-48 199.5 933 30.9
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 1.3e-48 199.1 965 28.9
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 2.3e-48 198.4 446 37.2
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 3.9e-48 197.6 963 31.9
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 7.3e-47 193.4 994 30.4
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 7.3e-47 193.4 334 45.5
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 1.6e-41 175.6 996 27.4
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 1.6e-41 175.6 170 62.4
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 4.6e-41 174.1 1003 28.1
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 6.0e-41 173.7 860 29.8
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 5.1e-40 170.6 936 32.8
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 5.6e-39 167.2 948 27.1
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 2.1e-38 165.2 951 27.8
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 4.0e-37 161.0 301 42.9
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 2.2e-35 155.2 876 28.9
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 2.2e-35 155.2 430 32.6
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 1.2e-33 149.4 883 27.6
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 6.0e-33 147.1 903 27.6
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 7.9e-33 146.7 891 27.9
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 2.3e-32 145.2 905 26.1
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 5.1e-32 144.1 876 26.6
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 1.1e-31 142.9 888 26.6
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 4.3e-31 141.0 890 26.2
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 4.3e-31 141.0 856 26.1
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 2.1e-30 138.7 899 27.4
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 2.1e-30 138.7 222 44.1
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 2.8e-30 138.3 895 26.3
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 3.7e-30 137.9 881 27.0
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 6.2e-30 137.1 890 26.0
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 1.1e-29 136.3 851 25.9
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 1.4e-29 136.0 893 25.4
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 4.9e-27 127.5 257 43.2
CAN.G289.65 Capsicum annuum HOM05D004628 ORTHO05D005166 9.3e-26 123.2 246 42.7
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 1.2e-25 122.9 179 48.0
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 1.8e-24 119.0 885 25.0
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 3.9e-24 117.9 892 26.0
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 5.1e-24 117.5 909 31.1
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 1.8e-21 109.0 310 35.2
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 1.2e-20 106.3 943 24.7
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 1.5e-20 105.9 894 29.8
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 2.0e-20 105.5 901 27.7
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 7.6e-20 103.6 926 24.2
CAN.G289.56 Capsicum annuum HOM05D004628 ORTHO05D005166 3.8e-19 101.3 307 34.9
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 3.2e-18 98.2 908 26.0
Nitab4.5_0008331g0010 Nicotiana tabacum HOM05D004628 ORTHO05D005166 3.2e-18 98.2 151 49.0
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 5.5e-18 97.4 81 72.8
CAN.G289.57 Capsicum annuum HOM05D004628 ORTHO05D005166 1.2e-17 96.3 160 45.0
Nn1g01808 Nelumbo nucifera HOM05D004628 ORTHO05D005166 8.7e-16 90.1 84 58.3
Nn5g30859 Nelumbo nucifera HOM05D004628 ORTHO05D005166 1.5e-15 89.4 189 36.5
arahy.Tifrunner.gnm1.ann1.GD5ZZG Arachis hypogaea HOM05D004628 ORTHO05D005166 4.3e-15 87.8 197 36.0
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 1.3e-14 86.3 838 24.8
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 4.1e-13 81.3 114 44.7
CAN.G289.55 Capsicum annuum HOM05D004628 ORTHO05D005166 3.4e-12 78.2 329 33.1
Nitab4.5_0000575g0060 Nicotiana tabacum HOM05D004628 ORTHO05D005166 3.4e-12 78.2 157 43.9
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 7.7e-12 77.0 932 25.1
CAN.G1627.6 Capsicum annuum HOM05D004628 ORTHO05D005166 1.0e-11 76.6 87 59.8
MBI01_g10116_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 1.7e-11 75.9 210 36.7
Os03g0672400 Oryza sativa ssp. japonica HOM05D058439 ORTHO05D005166 3.8e-11 74.7 255 31.0
TAR626G1368 Trochodendron aralioides HOM05D008208 ORTHO05D010143 5.0e-11 74.3 263 31.9
SEGI_16491 Sequoiadendron giganteum HOM05D004628 ORTHO05D005166 6.5e-11 73.9 968 25.2
MD09G1201700 Malus domestica HOM05D008208 ORTHO05D010143 1.4e-10 72.8 280 32.5
TAR639G0001 Trochodendron aralioides HOM05D008208 ORTHO05D010143 2.5e-10 72.0 266 31.6
Dinv30429 Davidia involucrata HOM05D008208 ORTHO05D010143 9.4e-10 70.1 236 31.4
FvH4_6g23772 Fragaria vesca HOM05D004628 ORTHO05D005166 1.2e-09 69.7 190 35.3
FAN09G3722 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.2e-09 69.7 49 67.3
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 4.6e-09 67.8 182 31.9
CAN.G1164.3 Capsicum annuum HOM05D009846 ORTHO05D002235 6.1e-09 67.4 125 44.8
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 2.3e-08 65.5 184 33.2
ATR0767G029 Amborella trichopoda HOM05D004628 ORTHO05D005166 3.0e-08 65.1 814 22.1
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 3.9e-08 64.7 150 38.7
Gorai.011G070600 Gossypium raimondii HOM05D008208 ORTHO05D010143 6.7e-08 63.9 201 34.3
MD17G1181700 Malus domestica HOM05D008208 ORTHO05D010143 6.7e-08 63.9 222 32.4
Zm00001eb217550 Zea mays HOM05D058439 ORTHO05D005166 8.8e-08 63.5 279 30.5
GSVIVG01016967001 Vitis vinifera HOM05D000585 ORTHO05D001841 1.5e-07 62.8 305 30.5
CSS0033280 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 2.0e-07 62.4 214 31.3
CSS0036998 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 2.0e-07 62.4 214 31.3
Duzib192G1063 Durio zibethinus HOM05D008208 ORTHO05D010143 3.3e-07 61.6 295 29.8
Gohir.D10G066500 Gossypium hirsutum HOM05D008208 ORTHO05D010143 3.3e-07 61.6 201 33.8
MD09G1201800 Malus domestica HOM05D008208 ORTHO05D010143 4.3e-07 61.2 263 30.0
Cc04_g02470 Coffea canephora HOM05D008208 ORTHO05D010143 5.7e-07 60.8 223 32.7
MBI04_g07011_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 5.7e-07 60.8 227 30.4
Dinv44808 Davidia involucrata HOM05D000003 ORTHO05D000126 7.4e-07 60.5 119 38.7
Lsat_1_v5_gn_0_18160 Lactuca sativa HOM05D004628 ORTHO05D005166 9.7e-07 60.1 104 49.0
QL05p019674 Quercus lobata HOM05D008208 ORTHO05D010143 9.7e-07 60.1 226 32.7
PGR102G1678 Punica granatum HOM05D008208 ORTHO05D010143 2.8e-06 58.5 74 45.9
TWI18G0382 Tripterygium wilfordii HOM05D008208 ORTHO05D010143 2.8e-06 58.5 250 31.2
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 3.7e-06 58.2 119 36.1
Actinidia09010 Actinidia chinensis HOM05D008208 ORTHO05D010143 4.8e-06 57.8 225 33.3
Solyc03g121080.3 Solanum lycopersicum HOM05D008208 ORTHO05D010143 4.8e-06 57.8 182 32.4
TAR624G0194 Trochodendron aralioides HOM05D008208 ORTHO05D010143 4.8e-06 57.8 279 29.4
BcaNung07335 Brassica carinata HOM05D004628 ORTHO05D005166 6.3e-06 57.4 78 51.3
Actinidia39131 Actinidia chinensis HOM05D008208 ORTHO05D010143 8.2e-06 57.0 252 31.3
CANSAT56G0900 Cannabis sativa HOM05D008208 ORTHO05D010143 8.2e-06 57.0 218 31.7
Gohir.A10G065000 Gossypium hirsutum HOM05D008208 ORTHO05D010143 8.2e-06 57.0 226 31.4
Peaxi162Scf00038g01129 Petunia axillaris HOM05D008208 ORTHO05D010143 8.2e-06 57.0 162 34.0
Sc10g0007610 Simmondsia chinensis HOM05D008208 ORTHO05D010143 8.2e-06 57.0 283 30.7


User provided reference genes

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