Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 6.5e-274 946.8 492 100.0
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 1.0e-165 587.4 507 66.9
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.3e-149 533.9 519 59.7
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.3e-149 533.9 519 59.7
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 1.5e-148 530.4 502 62.0
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 4.6e-142 508.8 527 56.7
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 7.3e-140 501.5 513 58.1
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 7.8e-134 481.5 498 57.0
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.5e-132 477.2 496 56.7
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 4.3e-132 475.7 532 54.1
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 5.6e-132 475.3 495 57.2
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 9.5e-132 474.6 502 54.6
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.1e-130 471.1 510 54.1
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 2.3e-130 469.9 509 54.0
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 6.8e-130 468.4 540 52.6
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 5.8e-129 465.3 495 57.4
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 2.2e-128 463.4 497 56.5
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 2.9e-128 463.0 504 55.0
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 8.3e-128 461.5 500 55.8
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 4.1e-127 459.1 497 56.1
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 4.1e-127 459.1 512 53.1
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 2.1e-126 456.8 503 54.1
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 4.6e-126 455.7 514 53.3
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 3.0e-125 453.0 511 54.6
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 3.0e-125 453.0 496 56.2
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 3.9e-125 452.6 515 53.2
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 2.5e-124 449.9 513 52.4
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 1.2e-123 447.6 502 52.8
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 1.2e-123 447.6 496 52.4
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 3.6e-123 446.0 513 52.2
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 1.8e-122 443.7 509 52.8
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 7.6e-121 438.3 515 52.4
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 1.4e-119 434.1 498 51.8
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 3.2e-119 433.0 499 51.9
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 2.7e-118 429.9 495 53.3
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 4.6e-118 429.1 502 53.4
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 6.6e-117 425.2 502 52.4
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 1.9e-116 423.7 533 49.2
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 2.5e-116 423.3 495 51.5
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 7.3e-116 421.8 496 51.6
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 9.6e-116 421.4 495 51.3
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.6e-115 420.6 493 49.7
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 2.1e-115 420.2 495 49.7
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 4.8e-115 419.1 496 51.6
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 1.1e-114 417.9 494 51.6
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 1.8e-114 417.2 505 51.7
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 3.1e-114 416.4 495 50.7
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 4.0e-114 416.0 520 48.1
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 9.0e-114 414.8 500 51.4
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.5e-113 414.1 527 50.3
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 2.0e-113 413.7 501 51.5
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 3.4e-113 412.9 494 51.8
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 3.4e-113 412.9 494 51.8
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 2.2e-112 410.2 494 51.4
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 2.9e-112 409.8 496 50.0
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 2.9e-112 409.8 504 51.4
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 2.9e-112 409.8 518 47.7
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 2.9e-112 409.8 468 51.1
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 3.8e-112 409.5 505 48.3
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 1.1e-111 407.9 350 64.0
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 2.4e-111 406.8 496 51.8
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 4.2e-111 406.0 502 48.4
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 7.1e-111 405.2 498 52.8
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 2.1e-110 403.7 499 49.5
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 2.7e-110 403.3 492 50.6
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 6.0e-110 402.1 515 50.7
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 6.0e-110 402.1 471 52.4
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 7.8e-110 401.7 495 51.3
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 7.8e-110 401.7 498 49.0
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 3.9e-109 399.4 500 48.8
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 6.6e-109 398.7 500 49.0
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 8.7e-109 398.3 500 48.6
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 1.1e-108 397.9 501 50.7
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 2.5e-108 396.7 508 47.2
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 7.3e-108 395.2 500 48.6
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 2.8e-107 393.3 498 49.2
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 2.8e-107 393.3 497 49.5
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 2.8e-107 393.3 496 47.6
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 2.4e-106 390.2 496 48.6
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 2.6e-105 386.7 504 47.8
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 3.4e-105 386.3 502 48.4
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 1.7e-104 384.0 499 46.1
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 2.4e-103 380.2 498 46.6
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 9.3e-103 378.3 422 51.2
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 9.3e-103 378.3 422 51.2
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 2.1e-102 377.1 424 52.6
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 2.1e-102 377.1 495 47.1
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 3.5e-102 376.3 466 46.8
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 1.0e-101 374.8 501 48.3
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 1.0e-101 374.8 495 47.9
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 6.7e-101 372.1 428 53.5
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 1.2e-97 361.3 508 45.3
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 4.5e-97 359.4 515 47.4
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 2.9e-96 356.7 499 45.3
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 6.5e-96 355.5 498 48.4
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 5.5e-95 352.4 391 53.7
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 2.7e-94 350.1 497 45.5
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 3.7e-91 339.7 494 43.5
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.2e-89 334.7 494 43.5
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.1e-87 328.2 493 43.2
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 4.2e-87 326.2 562 40.4
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 2.3e-85 320.5 491 43.6
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 3.9e-85 319.7 493 42.6
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 6.7e-85 318.9 492 42.5
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 1.3e-83 314.7 480 44.6
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 1.0e-80 305.1 493 40.8
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.3e-80 304.7 465 43.7
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 1.6e-78 297.7 416 48.1
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 6.7e-77 292.4 498 40.2
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 2.2e-75 287.3 493 39.4
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 9.1e-74 282.0 424 42.0
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.2e-70 271.6 333 49.5
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 8.8e-69 265.4 364 44.2
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 3.7e-67 260.0 499 36.9
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 1.3e-64 251.5 504 36.1
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 6.1e-62 242.7 491 39.1
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 2.2e-59 234.2 518 34.9
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 9.1e-58 228.8 236 58.5
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 4.5e-57 226.5 736 28.8
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 2.1e-54 217.6 222 55.9
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 4.7e-54 216.5 509 34.0
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 8.0e-54 215.7 463 34.3
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 7.5e-52 209.1 432 35.9
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 3.7e-51 206.8 389 36.0
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 2.1e-46 191.0 217 50.7
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.5e-44 184.9 215 50.2
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 1.1e-42 178.7 670 27.6
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 1.2e-41 175.3 414 34.8
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 1.5e-39 168.3 410 33.2
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 5.0e-32 143.3 234 39.3
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 1.2e-30 138.7 427 28.6
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 2.8e-30 137.5 214 43.5
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 1.4e-26 125.2 577 24.6
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 5.4e-26 123.2 175 41.1
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 1.6e-25 121.7 218 39.4
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 6.0e-25 119.8 145 43.4
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 5.0e-24 116.7 615 24.4
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 1.6e-22 111.7 90 57.8
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 2.3e-21 107.8 213 37.1
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 3.1e-21 107.5 157 50.3
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 6.8e-21 106.3 211 36.5
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 9.8e-20 102.4 252 34.5
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 2.4e-18 97.8 74 56.8
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 5.4e-18 96.7 156 38.5
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 3.5e-17 94.0 571 23.5
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 8.6e-16 89.4 507 24.9
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 1.5e-15 88.6 161 37.3
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 1.6e-14 85.1 218 32.1
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 4.7e-14 83.6 218 29.8
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 1.8e-13 81.6 182 35.2
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 1.5e-12 78.6 118 47.5
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 1.7e-11 75.1 210 30.0
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 1.4e-10 72.0 108 45.4
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 2.1e-09 68.2 122 44.3
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 2.3e-08 64.7 305 23.0
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 8.6e-08 62.8 46 56.5
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 6.2e-06 56.6 74 36.5
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 8.1e-06 56.2 121 32.2


User provided reference genes

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