Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 2.6e-60 235.7 170 100.0
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 1.1e-42 177.2 170 68.2
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 9.2e-42 174.1 163 84.7
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.2e-41 173.7 167 68.9
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 3.5e-41 172.2 167 68.3
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 3.5e-41 172.2 170 70.0
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 4.6e-41 171.8 163 81.6
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.0e-40 170.6 165 67.3
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.3e-40 170.2 170 66.5
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 5.0e-40 168.3 173 65.9
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 6.6e-40 167.9 171 77.2
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 1.1e-39 167.2 173 78.0
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 2.5e-39 166.0 175 65.7
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 9.5e-39 164.1 167 79.0
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.2e-38 163.7 167 67.7
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 2.1e-38 162.9 167 64.7
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.1e-38 162.9 167 64.7
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.1e-38 162.9 167 64.7
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 2.8e-38 162.5 170 76.5
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 4.7e-38 161.8 167 67.1
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 4.7e-38 161.8 167 66.5
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.4e-37 160.2 167 64.7
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 1.4e-37 160.2 170 69.4
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 2.3e-37 159.5 164 70.1
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 3.1e-37 159.1 173 74.0
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 6.8e-37 157.9 169 78.1
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 6.8e-37 157.9 164 77.4
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 8.9e-37 157.5 161 77.6
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 1.2e-36 157.1 167 64.7
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 1.5e-36 156.8 161 80.7
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 2.6e-36 156.0 172 62.2
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 3.4e-36 155.6 164 78.7
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 5.8e-36 154.8 170 59.4
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 5.8e-36 154.8 169 76.3
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 1.3e-35 153.7 172 50.0
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 1.3e-35 153.7 163 73.0
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 1.7e-35 153.3 170 71.2
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 2.9e-35 152.5 167 70.7
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 3.7e-35 152.1 170 62.9
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 3.7e-35 152.1 166 63.9
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 3.7e-35 152.1 158 63.9
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 6.4e-35 151.4 160 77.5
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 8.3e-35 151.0 169 78.1
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 8.3e-35 151.0 169 78.1
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 1.9e-34 149.8 163 76.1
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 1.9e-34 149.8 171 73.1
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 1.9e-34 149.8 160 77.5
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 2.4e-34 149.4 171 62.6
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 3.2e-34 149.1 163 76.1
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 3.2e-34 149.1 163 76.1
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 3.2e-34 149.1 164 64.6
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 4.1e-34 148.7 172 63.4
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 5.4e-34 148.3 147 70.1
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 5.4e-34 148.3 158 76.6
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 5.4e-34 148.3 160 65.6
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 7.1e-34 147.9 160 63.8
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 2.1e-33 146.4 162 63.0
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 2.1e-33 146.4 160 77.5
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 2.1e-33 146.4 160 77.5
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 2.1e-33 146.4 166 72.9
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 2.1e-33 146.4 170 77.1
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 2.7e-33 146.0 172 74.4
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 4.6e-33 145.2 158 75.3
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 4.6e-33 145.2 170 51.8
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 6.0e-33 144.8 165 73.3
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 1.0e-32 144.1 162 61.1
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 1.0e-32 144.1 163 64.4
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 1.0e-32 144.1 158 78.5
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 1.0e-32 144.1 162 71.6
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 1.0e-32 144.1 164 62.2
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 1.3e-32 143.7 170 61.2
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 1.3e-32 143.7 152 71.7
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 1.3e-32 143.7 171 62.0
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 1.7e-32 143.3 159 66.7
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 1.7e-32 143.3 159 77.4
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 3.0e-32 142.5 159 76.1
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 3.9e-32 142.1 167 61.7
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 5.1e-32 141.7 158 73.4
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 5.1e-32 141.7 158 75.3
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 6.6e-32 141.4 159 62.3
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.5e-31 140.2 158 73.4
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 1.5e-31 140.2 163 76.7
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 1.9e-31 139.8 159 74.8
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 1.9e-31 139.8 148 77.7
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 3.3e-31 139.0 157 77.1
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 4.3e-31 138.7 160 74.4
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 5.6e-31 138.3 160 71.9
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 5.6e-31 138.3 164 62.2
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 5.6e-31 138.3 157 76.4
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 7.3e-31 137.9 151 61.6
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 9.5e-31 137.5 159 71.7
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 9.5e-31 137.5 170 59.4
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 2.8e-30 136.0 170 58.8
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 2.8e-30 136.0 170 58.8
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 3.6e-30 135.6 170 58.8
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 8.1e-30 134.4 158 74.1
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.1e-29 134.0 172 48.3
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.4e-29 133.7 170 58.2
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 1.4e-29 133.7 168 58.3
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 2.3e-29 132.9 172 47.7
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 4.0e-29 132.1 153 49.0
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 5.2e-29 131.7 162 48.1
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 8.9e-29 131.0 164 47.0
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 5.8e-28 128.3 168 57.7
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 5.8e-28 128.3 143 68.5
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 2.2e-27 126.3 129 70.5
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 6.4e-27 124.8 98 87.8
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 6.4e-27 124.8 158 58.9
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 8.4e-27 124.4 164 70.1
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 8.4e-27 124.4 227 36.6
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 5.4e-26 121.7 164 60.4
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 5.4e-26 121.7 164 71.3
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 2.7e-25 119.4 145 75.9
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 2.7e-25 119.4 164 55.5
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 4.6e-25 118.6 163 68.1
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 4.6e-25 118.6 164 68.3
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 6.0e-25 118.2 168 54.8
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 7.8e-25 117.9 162 48.1
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 7.8e-25 117.9 173 65.3
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 7.8e-25 117.9 173 65.3
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 1.0e-24 117.5 173 64.7
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 1.0e-24 117.5 159 42.8
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 1.0e-24 117.5 163 69.3
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 1.7e-24 116.7 170 53.5
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 1.7e-24 116.7 170 53.5
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 1.7e-24 116.7 149 71.8
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 2.3e-24 116.3 162 54.3
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 2.3e-24 116.3 162 54.3
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 2.3e-24 116.3 162 54.3
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 2.5e-23 112.8 164 67.7
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 2.5e-23 112.8 174 63.8
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 4.3e-23 112.1 149 56.4
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 5.6e-23 111.7 147 71.4
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.2e-22 110.5 160 63.8
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 2.1e-22 109.8 135 57.0
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 4.7e-22 108.6 135 57.0
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 8.9e-21 104.4 160 50.6
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 1.5e-20 103.6 126 60.3
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 1.9e-18 96.7 126 61.1
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 2.1e-17 93.2 101 74.3
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 1.3e-16 90.5 121 61.2
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 3.0e-16 89.4 152 51.3
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 3.0e-16 89.4 117 60.7
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 3.3e-15 85.9 128 54.7
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 2.1e-14 83.2 80 50.0
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 1.8e-13 80.1 94 71.3
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 6.9e-13 78.2 108 37.0
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 2.9e-11 72.8 82 45.1
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 3.5e-09 65.9 41 68.3
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 2.3e-08 63.2 38 73.7


User provided reference genes

Program Settings