Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 2.5e-244 848.6 506 100.0
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 7.0e-146 521.5 326 83.1
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 5.4e-138 495.4 329 79.0
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 5.9e-137 491.9 329 78.7
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 2.3e-120 436.8 332 72.9
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 6.2e-118 428.7 327 68.2
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.0e-112 411.4 328 68.6
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 2.3e-112 410.2 333 68.5
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 8.1e-110 401.7 336 67.0
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 3.1e-109 399.8 335 66.3
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 1.1e-106 391.3 325 64.6
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 2.1e-105 387.1 339 64.9
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 1.8e-101 374.0 333 63.7
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.8e-101 374.0 346 62.4
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 4.4e-100 369.4 333 63.4
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 1.4e-98 364.4 330 63.0
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 5.4e-98 362.5 329 62.9
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 2.1e-97 360.5 343 60.9
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.4e-93 347.8 259 68.7
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 1.8e-93 347.4 329 59.3
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 4.4e-92 342.8 363 58.1
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 5.8e-92 342.4 335 58.5
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 9.9e-92 341.7 335 60.0
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 9.9e-92 341.7 335 60.0
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 2.9e-91 340.1 331 59.5
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 4.9e-91 339.3 363 55.9
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 1.9e-90 337.4 332 58.1
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 5.4e-90 335.9 335 57.3
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 9.3e-90 335.1 354 54.8
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 1.7e-88 330.9 348 53.7
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 5.1e-88 329.3 366 53.8
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 8.7e-88 328.6 340 57.9
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 4.3e-87 326.2 329 56.5
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 9.6e-87 325.1 343 56.3
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 4.8e-86 322.8 341 56.0
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 3.1e-85 320.1 365 53.7
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 1.2e-84 318.2 335 56.4
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 3.4e-84 316.6 332 57.5
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 4.5e-84 316.2 331 55.9
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 2.2e-83 313.9 333 56.5
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 3.8e-83 313.2 336 55.1
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 1.4e-82 311.2 348 56.3
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 2.4e-82 310.5 341 53.1
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 3.2e-82 310.1 337 56.7
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 4.6e-81 306.2 333 54.7
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 7.9e-81 305.4 334 52.7
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 7.9e-81 305.4 331 55.0
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 7.9e-81 305.4 347 50.4
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 1.8e-80 304.3 331 54.1
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 5.1e-80 302.8 365 52.3
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 1.1e-79 301.6 335 54.6
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.9e-79 300.8 361 51.2
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 1.6e-78 297.7 362 51.1
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 2.1e-78 297.4 270 62.6
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.1e-78 297.4 362 51.1
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 2.1e-78 297.4 334 56.0
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 3.7e-78 296.6 333 54.7
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 4.8e-78 296.2 351 53.3
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.4e-77 294.7 333 54.7
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 3.1e-77 293.5 332 54.8
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 1.5e-76 291.2 342 55.0
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 3.4e-76 290.0 364 51.6
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.4e-76 290.0 361 49.6
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 5.8e-76 289.3 332 54.8
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.0e-75 288.5 365 50.4
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 1.3e-75 288.1 363 50.7
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 2.2e-75 287.3 331 54.7
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 2.9e-75 287.0 337 55.2
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 3.8e-75 286.6 313 53.0
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 7.1e-74 282.3 346 52.3
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 1.6e-73 281.2 363 50.7
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 1.0e-72 278.5 330 51.5
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 2.3e-72 277.3 333 53.8
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 5.1e-72 276.2 332 50.0
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 4.3e-71 273.1 319 52.0
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 1.1e-69 268.5 344 50.6
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 1.8e-69 267.7 345 51.3
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 3.1e-69 266.9 335 48.1
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 4.5e-68 263.1 334 50.3
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.0e-67 261.9 336 50.3
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 3.8e-67 260.0 359 44.8
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 6.5e-67 259.2 336 48.5
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 6.5e-67 259.2 365 45.2
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 8.5e-67 258.8 332 48.5
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 1.4e-66 258.1 332 48.8
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 2.1e-65 254.2 344 48.5
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.0e-64 251.9 334 49.7
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 6.7e-64 249.2 333 51.1
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 3.3e-63 246.9 323 47.7
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 2.2e-62 244.2 364 47.0
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 1.4e-61 241.5 333 47.7
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 4.1e-61 240.0 326 49.1
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 2.0e-60 237.7 359 44.8
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 2.1e-57 227.6 357 43.4
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 1.8e-56 224.6 355 44.2
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 4.4e-55 219.9 332 44.9
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 5.7e-55 219.5 349 42.7
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 1.3e-54 218.4 285 49.8
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 2.2e-54 217.6 351 43.3
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 2.4e-53 214.2 359 42.9
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 9.1e-53 212.2 358 43.3
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 9.1e-53 212.2 358 43.3
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 1.2e-52 211.8 359 43.7
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 1.0e-51 208.8 357 42.3
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.0e-51 208.8 334 43.1
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 8.5e-51 205.7 356 41.6
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 4.2e-50 203.4 333 43.8
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 6.7e-48 196.1 369 37.9
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 2.2e-46 191.0 363 42.7
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 2.2e-46 191.0 207 54.6
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 3.7e-46 190.3 258 46.1
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 3.7e-46 190.3 247 45.3
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 1.4e-45 188.3 362 39.8
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 1.4e-45 188.3 362 39.8
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 7.0e-45 186.0 337 39.2
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 3.5e-44 183.7 257 44.4
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 3.5e-44 183.7 257 44.4
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 5.0e-43 179.9 358 40.2
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 6.5e-43 179.5 358 40.2
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 1.5e-42 178.3 337 41.5
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 1.9e-42 177.9 253 46.6
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.0e-40 172.2 260 40.4
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 3.0e-40 170.6 252 43.7
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 5.2e-40 169.9 214 45.8
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 1.2e-39 168.7 233 44.6
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 1.5e-39 168.3 253 43.9
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 4.4e-39 166.8 251 43.4
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 5.7e-39 166.4 197 50.8
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 5.7e-39 166.4 358 36.6
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 9.7e-39 165.6 248 45.6
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 6.3e-38 162.9 197 51.8
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 8.2e-38 162.5 261 47.1
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.8e-37 161.4 273 43.2
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 2.4e-37 161.0 257 42.4
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 2.7e-36 157.5 208 45.2
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 1.3e-35 155.2 228 41.7
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 1.3e-35 155.2 257 40.9
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 6.5e-35 152.9 222 40.5
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 1.9e-34 151.4 257 40.9
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 2.5e-34 151.0 252 41.3
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 7.2e-34 149.4 224 42.9
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 3.6e-33 147.1 196 47.4
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.7e-33 146.7 232 37.9
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 6.1e-33 146.4 221 43.9
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 2.3e-32 144.4 329 33.4
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 2.0e-31 141.4 251 40.2
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 2.0e-31 141.4 328 36.0
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 2.6e-31 141.0 252 38.9
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 2.8e-30 137.5 324 33.0
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 4.8e-30 136.7 331 34.4
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 6.3e-30 136.3 259 39.4
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 3.1e-29 134.0 213 42.3
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 9.1e-29 132.5 337 36.2
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 2.7e-28 131.0 262 38.5
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 8.5e-27 125.9 280 37.9
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.0e-24 119.0 155 46.5
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 1.5e-23 115.2 89 58.4
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 6.6e-19 99.8 190 41.1
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 9.5e-18 95.9 136 41.9
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 9.5e-18 95.9 137 42.3
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 9.5e-18 95.9 137 42.3
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 1.4e-16 92.0 47 85.1
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.5e-15 88.6 227 32.2
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 2.2e-14 84.7 129 43.4
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 6.4e-14 83.2 77 59.7
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.4e-13 82.0 117 42.7
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 3.2e-13 80.9 97 53.6
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.3e-11 75.5 106 50.9
MD16G1127600 Malus domestica HOM05D002407 ORTHO05D002476 5.6e-10 70.1 148 41.9
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 1.6e-09 68.6 51 58.8
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 4.4e-07 60.5 132 33.3


User provided reference genes

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