Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv09348 Davidia involucrata HOM05D001393 ORTHO05D007477 0.0e+00 1573.9 908 100.0
Actinidia21547 Actinidia chinensis HOM05D001393 ORTHO05D007477 2.4e-229 799.7 913 53.7
vmacro13675 Vaccinium macrocarpon HOM05D001393 ORTHO05D007477 8.0e-193 678.3 927 47.8
CSS0038724 Camellia sinensis var. sinensis HOM05D001393 ORTHO05D007477 3.7e-190 669.5 659 58.4
Cfa010777 Carpinus fangiana HOM05D001393 ORTHO05D007477 5.0e-187 659.1 919 46.8
CiPaw.14G000700 Carya illinoinensis HOM05D001393 ORTHO05D007477 2.8e-177 626.7 920 46.0
QL04p008271 Quercus lobata HOM05D001393 ORTHO05D007477 2.3e-171 607.1 925 45.2
Prupe.2G015000 Prunus persica HOM05D001393 ORTHO05D007477 1.5e-162 577.8 926 44.4
GSVIVG01032121001 Vitis vinifera HOM05D001393 ORTHO05D007477 8.7e-155 552.0 922 43.0
MD02G1309200 Malus domestica HOM05D001393 ORTHO05D007477 3.2e-149 533.5 926 41.6
Potri.001G265100 Populus trichocarpa HOM05D001393 ORTHO05D007477 3.5e-148 530.0 945 41.2
RcHm_v2.0_Chr1g0316471 Rosa chinensis HOM05D001393 ORTHO05D007477 1.5e-146 524.6 884 42.0
Thecc.01G409700 Theobroma cacao HOM05D001393 ORTHO05D007477 4.3e-146 523.1 936 41.1
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 1.8e-144 517.7 942 40.8
Ciclev10030722m.g Citrus clementina HOM05D001393 ORTHO05D007477 5.3e-144 516.2 919 39.3
Manes.10G141000 Manihot esculenta HOM05D001393 ORTHO05D007477 1.4e-141 508.1 905 41.3
Sabra16G0162900 Salix brachista HOM05D001393 ORTHO05D007477 1.2e-140 505.0 934 39.6
FAN06G3336 Fragaria x ananassa HOM05D001393 ORTHO05D007477 4.6e-140 503.1 927 40.1
FvH4_7g01170 Fragaria vesca HOM05D001393 ORTHO05D007477 1.5e-138 498.0 930 39.9
Duzib133G0545 Durio zibethinus HOM05D001393 ORTHO05D007477 7.4e-138 495.7 925 40.4
Atru.chr11.2612 Acer truncatum HOM05D001393 ORTHO05D007477 1.6e-137 494.6 904 39.6
FAN03G3510 Fragaria x ananassa HOM05D001393 ORTHO05D007477 9.0e-136 488.8 929 39.2
FAN01G2686 Fragaria x ananassa HOM05D001393 ORTHO05D007477 1.7e-134 484.6 927 39.3
Oeu049495.1 Olea europaea HOM05D001393 ORTHO05D007477 2.5e-133 480.7 976 38.1
TAR623G0231 Trochodendron aralioides HOM05D001393 ORTHO05D007477 7.1e-133 479.2 546 52.2
FAN03G1765 Fragaria x ananassa HOM05D001393 ORTHO05D007477 2.7e-132 477.2 952 38.2
TWI09G0484 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 4.1e-128 463.4 644 46.4
TWI73G0713 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 6.9e-128 462.6 1040 35.9
Nn2g15307 Nelumbo nucifera HOM05D001393 ORTHO05D007477 7.6e-127 459.1 964 37.2
Potri.009G060000 Populus trichocarpa HOM05D001393 ORTHO05D007477 2.5e-125 454.1 683 45.4
Cpa.g.sc125.11 Carica papaya HOM05D001393 ORTHO05D007477 1.1e-120 438.7 877 39.0
Gohir.D08G164900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 1.1e-120 438.7 871 38.3
PGSC0003DMG401023992 Solanum tuberosum HOM05D001393 ORTHO05D007477 1.8e-120 438.0 926 37.6
Dinv43433 Davidia involucrata HOM05D001393 ORTHO05D007477 4.1e-120 436.8 301 77.7
Gohir.A08G143900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 5.3e-120 436.4 916 37.6
Sopen11g002980 Solanum pennellii HOM05D001393 ORTHO05D007477 1.2e-119 435.3 917 37.9
CAN.G1513.5 Capsicum annuum HOM05D001393 ORTHO05D007477 3.4e-119 433.7 929 36.1
Gorai.004G171900 Gossypium raimondii HOM05D001393 ORTHO05D007477 1.3e-118 431.8 877 38.3
Solyc11g007060.2 Solanum lycopersicum HOM05D001393 ORTHO05D007477 8.5e-118 429.1 874 38.1
MD07G1012500 Malus domestica HOM05D001393 ORTHO05D007477 1.1e-117 428.7 698 43.1
Cc02_g28120 Coffea canephora HOM05D001393 ORTHO05D007477 3.9e-115 420.2 504 48.8
CANSAT80G1121 Cannabis sativa HOM05D001393 ORTHO05D007477 1.5e-114 418.3 921 35.9
MSTRG.28063 Avicennia marina HOM05D001393 ORTHO05D007477 2.8e-113 414.1 910 38.9
SalBow7G4183 Salvia bowleyana HOM05D001393 ORTHO05D007477 1.0e-110 405.6 954 36.7
DCAR_029678 Daucus carota HOM05D001393 ORTHO05D007477 2.2e-110 404.4 551 46.8
Nitab4.5_0001761g0330 Nicotiana tabacum HOM05D001393 ORTHO05D007477 3.2e-109 400.6 891 36.5
Migut.N01605 Erythranthe guttata HOM05D001393 ORTHO05D007477 5.5e-109 399.8 598 44.3
Eucgr.J01280 Eucalyptus grandis HOM05D001393 ORTHO05D007477 2.3e-107 394.4 921 34.9
Nitab4.5_0000001g0230 Nicotiana tabacum HOM05D001393 ORTHO05D007477 2.3e-107 394.4 862 35.3
Sed0015725 Sechium edule HOM05D001393 ORTHO05D007477 4.1e-104 383.6 916 34.3
ClCG09G004070 Citrullus lanatus HOM05D001393 ORTHO05D007477 4.5e-103 380.2 918 35.4
Peaxi162Scf00152g01336 Petunia axillaris HOM05D001393 ORTHO05D007477 6.5e-102 376.3 959 33.6
SGA_v2.0_scaffold5G02964 Striga asiatica HOM05D001393 ORTHO05D007477 1.9e-101 374.8 889 34.4
MBI04_g36081_MAGBIO Magnolia biondii HOM05D001393 ORTHO05D007477 3.6e-100 370.5 987 32.3
EL10Ac2g04339 Beta vulgaris HOM05D001393 ORTHO05D007477 4.7e-100 370.2 950 33.7
PGR044G2234 Punica granatum HOM05D001393 ORTHO05D007477 4.0e-99 367.1 943 34.1
MELO3C023559.2 Cucumis melo HOM05D001393 ORTHO05D007477 3.3e-98 364.0 955 33.1
MSTRG.5028 Avicennia marina HOM05D001393 ORTHO05D007477 4.8e-97 360.1 944 33.8
CsaV3_7G030970 Cucumis sativus L. HOM05D001393 ORTHO05D007477 8.2e-97 359.4 603 41.5
Sc11g0009120 Simmondsia chinensis HOM05D001393 ORTHO05D007477 4.1e-96 357.1 919 35.6
AUR62023073 Chenopodium quinoa HOM05D001393 ORTHO05D007477 4.5e-95 353.6 932 33.7
Glyma.09G228900 Glycine max HOM05D001393 ORTHO05D007477 5.9e-95 353.2 956 32.5
Sabra09G0044200 Salix brachista HOM05D001393 ORTHO05D007477 1.0e-94 352.4 672 39.9
Hund21482 Selenicereus undatus HOM05D001393 ORTHO05D007477 1.2e-92 345.5 979 33.0
SalBow6G6124 Salvia bowleyana HOM05D001393 ORTHO05D007477 2.1e-92 344.7 621 40.3
Phvul.011G009600 Phaseolus vulgaris HOM05D001393 ORTHO05D007477 4.0e-91 340.5 599 40.7
HanXRQChr09g0251311 Helianthus annuus HOM05D001393 ORTHO05D007477 6.8e-91 339.7 593 41.3
Lj3g0000057 Lotus japonicus HOM05D001393 ORTHO05D007477 6.8e-91 339.7 923 33.6
arahy.Tifrunner.gnm1.ann1.C4Q3NJ Arachis hypogaea HOM05D001393 ORTHO05D007477 5.7e-90 336.7 894 34.1
arahy.Tifrunner.gnm1.ann1.S6CP9J Arachis hypogaea HOM05D001393 ORTHO05D007477 1.7e-89 335.1 894 34.2
VMungo1127G2137 Vigna mungo HOM05D001393 ORTHO05D007477 1.7e-89 335.1 630 39.4
Psat7g196360 Pisum sativum HOM05D001393 ORTHO05D007477 4.1e-88 330.5 618 39.6
Aqoxy1G00280 Aquilegia oxysepala HOM05D001393 ORTHO05D007477 3.8e-86 323.9 575 39.8
Glyma.12G007700 Glycine max HOM05D001393 ORTHO05D007477 3.8e-86 323.9 945 32.8
Duzib138G1437 Durio zibethinus HOM05D001393 ORTHO05D007477 7.2e-85 319.7 716 37.0
PSO339G5226 Papaver somniferum HOM05D001393 ORTHO05D007477 1.2e-84 318.9 444 44.8
PSO384G0142 Papaver somniferum HOM05D001393 ORTHO05D007477 2.8e-84 317.8 447 44.7
Medtr4g037495 Medicago truncatula HOM05D001393 ORTHO05D007477 3.6e-84 317.4 943 32.8
Ca_19581_v3 Cicer arietinum L. HOM05D001393 ORTHO05D007477 4.7e-84 317.0 922 32.5
AUR62009391 Chenopodium quinoa HOM05D001393 ORTHO05D007477 1.0e-83 315.8 920 31.8
TPR.G3660 Trifolium pratense HOM05D001393 ORTHO05D007477 1.1e-80 305.8 930 32.5
Lj9A633T62 Lonicera japonica HOM05D001393 ORTHO05D007477 1.3e-78 298.9 773 35.7
Lalb_Chr19g0140311 Lupinus albus HOM05D001393 ORTHO05D007477 2.9e-78 297.7 914 31.0
Lsat_1_v5_gn_1_106561 Lactuca sativa HOM05D001393 ORTHO05D007477 1.2e-76 292.4 532 41.7
Dinv43435 Davidia involucrata HOM05D001393 ORTHO05D007477 2.3e-75 288.1 359 50.7
A06p39440 Brassica napus HOM05D001393 ORTHO05D007477 8.6e-70 269.6 728 34.1
BraA06t26859Z Brassica rapa HOM05D001393 ORTHO05D007477 8.6e-70 269.6 728 34.1
Aa31LG11G7400 Aethionema arabicum HOM05D001393 ORTHO05D007477 9.5e-69 266.2 573 35.1
Carub.0008s0749 Capsella rubella HOM05D001393 ORTHO05D007477 1.8e-67 261.9 644 34.8
Thhalv10003674m.g Eutrema salsugineum HOM05D001393 ORTHO05D007477 1.8e-67 261.9 646 34.8
unitig_578.g16692 Utricularia gibba HOM05D001393 ORTHO05D007477 4.0e-67 260.8 541 36.0
Sp2g18440 Schrenkiella parvula HOM05D001393 ORTHO05D007477 8.9e-67 259.6 744 32.9
C07p38830 Brassica napus HOM05D001393 ORTHO05D007477 4.1e-64 250.8 740 32.8
BolC7t44402H Brassica oleracea HOM05D001393 ORTHO05D007477 3.9e-62 244.2 740 32.6
AT5G47940 Arabidopsis thaliana HOM05D001393 ORTHO05D007477 6.6e-62 243.4 710 32.0
BcaC06g30834 Brassica carinata HOM05D001393 ORTHO05D007477 1.6e-60 238.8 548 34.9
CARHR184320 Cardamine hirsuta HOM05D001393 ORTHO05D007477 1.8e-59 235.3 595 34.1
AL8G20040 Arabidopsis lyrata HOM05D001393 ORTHO05D007477 3.1e-59 234.6 724 31.9
Os07g0569000 Oryza sativa ssp. japonica HOM05D001393 ORTHO05D007477 3.4e-58 231.1 537 34.3
HPP92_015712 Vanilla planifolia HOM05D001393 ORTHO05D007477 3.7e-57 227.6 606 32.7
HPP92_026649 Vanilla planifolia HOM05D001393 ORTHO05D007477 4.9e-57 227.3 604 32.6
Zm00001eb324710 Zea mays HOM05D001393 ORTHO05D007477 7.1e-56 223.4 545 33.0
Dinv43434 Davidia involucrata HOM05D001393 ORTHO05D007477 1.9e-53 215.3 218 58.3
Zm00001eb107220 Zea mays HOM05D001393 ORTHO05D007477 1.9e-53 215.3 508 33.1
CDE05G0268 Ceratophyllum demersum HOM05D001393 ORTHO05D007477 2.5e-53 214.9 415 37.1
ECA248G1228 Erigeron canadensis HOM05D001393 ORTHO05D007477 1.1e-51 209.5 550 34.9
Ah.10g038800 Amaranthus hybridus HOM05D001393 ORTHO05D007477 1.5e-45 189.1 441 35.1
ATR0332G069 Amborella trichopoda HOM05D001393 ORTHO05D007477 1.9e-45 188.7 687 30.9
FAN10G3273 Fragaria x ananassa HOM05D001393 ORTHO05D007477 7.6e-42 176.8 162 56.2
Eucgr.J01288 Eucalyptus grandis HOM05D001393 ORTHO05D007477 1.5e-21 109.4 173 39.9
TAR623G1737 Trochodendron aralioides HOM05D001393 ORTHO05D007477 7.9e-15 87.0 367 26.2
SEGI_04113 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 1.1e-11 76.6 427 23.7
SEGI_08002 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 1.1e-11 76.6 427 23.7
FvH4_5g06191 Fragaria vesca HOM05D001393 ORTHO05D007477 3.2e-08 65.1 64 51.6
SEGI_29291 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 4.2e-08 64.7 834 20.7


User provided reference genes

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