Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 7.0e-48 193.7 106 100.0
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 8.9e-27 123.6 96 74.0
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 7.5e-26 120.6 94 67.0
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 7.0e-24 114.0 94 63.8
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 7.0e-24 114.0 94 66.0
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 1.2e-23 113.2 95 64.2
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 7.8e-23 110.5 96 63.5
Dinv43432 Davidia involucrata HOM05D004268 ORTHO05D004958 5.0e-22 107.8 93 75.3
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 6.6e-22 107.5 94 66.0
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 5.6e-21 104.4 97 61.9
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 5.6e-21 104.4 94 63.8
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 7.3e-21 104.0 94 63.8
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 7.3e-21 104.0 94 63.8
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 7.3e-21 104.0 94 62.8
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 9.5e-21 103.6 95 61.1
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 9.5e-21 103.6 95 60.0
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 6.2e-20 100.9 95 60.0
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 1.4e-19 99.8 94 60.6
Rhsim01G0129200 Rhododendron simsii HOM05D000074 ORTHO05D004958 1.4e-19 99.8 99 64.6
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 3.1e-19 98.6 95 65.3
Potri.001G265000 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.2e-18 96.7 87 62.1
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 2.0e-18 95.9 96 62.5
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 2.6e-18 95.5 95 62.1
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 4.4e-18 94.7 95 58.9
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 9.8e-18 93.6 97 58.8
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 1.3e-17 93.2 95 56.8
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 1.7e-17 92.8 95 58.9
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 1.7e-17 92.8 95 60.0
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 2.9e-17 92.0 95 60.0
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 4.9e-17 91.3 96 62.5
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 8.3e-17 90.5 95 61.1
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 8.3e-17 90.5 95 61.1
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 5.4e-16 87.8 95 56.8
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 7.1e-16 87.4 95 56.8
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 9.2e-16 87.0 96 63.5
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 1.6e-15 86.3 95 57.9
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 2.1e-15 85.9 96 56.2
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 7.8e-15 84.0 98 53.1
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 1.0e-14 83.6 98 53.1
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 1.3e-14 83.2 103 54.4
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 1.7e-14 82.8 95 53.7
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 3.0e-14 82.0 99 54.5
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 6.6e-14 80.9 102 51.0
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 8.6e-14 80.5 98 53.1
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 1.1e-13 80.1 94 57.4
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 1.5e-13 79.7 99 51.5
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 1.9e-13 79.3 99 48.5
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 2.5e-13 79.0 96 57.3
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 3.3e-13 78.6 95 52.6
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 5.6e-13 77.8 95 51.6
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 5.6e-13 77.8 106 50.0
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 7.3e-13 77.4 96 50.0
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 9.5e-13 77.0 94 55.3
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 1.2e-12 76.6 95 50.5
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 2.8e-12 75.5 98 54.1
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 3.6e-12 75.1 94 50.0
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 1.1e-11 73.6 94 50.0
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 1.1e-11 73.6 95 49.5
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 1.1e-11 73.6 97 52.6
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 1.1e-11 73.6 97 52.6
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 1.4e-11 73.2 97 52.6
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 1.8e-11 72.8 92 50.0
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 1.8e-11 72.8 99 50.5
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 1.8e-11 72.8 94 50.0
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.3e-11 72.4 97 50.5
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.3e-11 72.4 97 50.5
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 2.3e-11 72.4 94 52.1
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 3.1e-11 72.0 95 51.6
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 4.0e-11 71.6 100 50.0
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.5e-10 69.7 104 43.3
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 4.4e-10 68.2 96 50.0
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 5.8e-10 67.8 87 47.1
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 5.8e-10 67.8 95 49.5
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 7.6e-10 67.4 104 47.1
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 7.6e-10 67.4 96 47.9
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 2.2e-09 65.9 99 43.4
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 2.9e-09 65.5 97 45.4
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 3.8e-09 65.1 96 45.8
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 4.9e-09 64.7 99 46.5
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 6.4e-09 64.3 95 46.3
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 6.4e-09 64.3 95 46.3
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 8.4e-09 63.9 96 44.8
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.1e-08 63.5 95 46.3
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 1.1e-08 63.5 100 47.0
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 1.4e-08 63.2 96 45.8
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.9e-08 62.8 96 45.8
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 2.4e-08 62.4 100 43.0
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 2.4e-08 62.4 100 43.0
Actinidia16340 Actinidia chinensis HOM05D004268 ORTHO05D004958 3.2e-08 62.0 96 44.8
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 3.2e-08 62.0 98 50.0
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 4.1e-08 61.6 97 48.5
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 4.1e-08 61.6 96 47.9
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 4.1e-08 61.6 99 45.5
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 5.4e-08 61.2 97 50.5
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 5.4e-08 61.2 101 47.5
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 7.1e-08 60.8 95 45.3
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 9.2e-08 60.5 96 47.9
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 9.2e-08 60.5 96 47.9
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 9.2e-08 60.5 96 47.9
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 9.2e-08 60.5 95 41.1
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 9.2e-08 60.5 107 45.8
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 1.2e-07 60.1 96 47.9
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 1.6e-07 59.7 97 48.5
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 1.6e-07 59.7 96 47.9
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 1.6e-07 59.7 98 45.9
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 2.1e-07 59.3 96 46.9
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 2.1e-07 59.3 96 46.9
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 2.1e-07 59.3 96 46.9
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 2.1e-07 59.3 98 51.0
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 3.5e-07 58.5 96 46.9
CSS0020424 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 3.5e-07 58.5 97 48.5
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 4.6e-07 58.2 97 49.5
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 6.0e-07 57.8 97 45.4
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 1.0e-06 57.0 96 42.7
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 1.0e-06 57.0 95 44.2
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 1.3e-06 56.6 96 44.8
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 1.7e-06 56.2 96 47.9
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 5.1e-06 54.7 97 44.3
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 5.1e-06 54.7 97 40.2
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 6.6e-06 54.3 83 47.0
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 8.6e-06 53.9 98 42.9


User provided reference genes

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