Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv09309 Davidia involucrata HOM05D003693 ORTHO05D004698 1.5e-286 988.8 500 100.0
Dinv43405 Davidia involucrata HOM05D003693 ORTHO05D004698 2.5e-260 901.7 492 93.1
Hma1.2p1_0685F.1_g203180 Hydrangea macrophylla HOM05D003693 ORTHO05D004698 2.2e-253 878.6 492 90.7
TAR563G0002 Trochodendron aralioides HOM05D003693 ORTHO05D004698 3.3e-249 864.8 493 89.0
Rhsim07G0058800 Rhododendron simsii HOM05D003693 ORTHO05D004698 6.9e-247 857.1 497 88.9
CiPaw.16G119500 Carya illinoinensis HOM05D003693 ORTHO05D004698 1.2e-243 846.3 492 87.4
QL10p037598 Quercus lobata HOM05D003693 ORTHO05D004698 2.7e-243 845.1 496 86.9
Thecc.01G406700 Theobroma cacao HOM05D003693 ORTHO05D004698 3.6e-243 844.7 493 85.8
Thecc.05G189800 Theobroma cacao HOM05D003693 ORTHO05D004698 6.1e-243 844.0 497 86.5
CSS0039233 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 7.9e-243 843.6 492 87.2
Atru.chr12.1748 Acer truncatum HOM05D003693 ORTHO05D004698 5.1e-242 840.9 493 86.4
Cfa020929 Carpinus fangiana HOM05D003693 ORTHO05D004698 1.7e-240 835.9 492 87.0
CANSAT21G0769 Cannabis sativa HOM05D003693 ORTHO05D004698 2.8e-240 835.1 492 86.8
vmacro13696 Vaccinium macrocarpon HOM05D003693 ORTHO05D004698 1.1e-239 833.2 527 82.9
Manes.12G004200 Manihot esculenta HOM05D003693 ORTHO05D004698 1.4e-239 832.8 502 84.9
Migut.B01266 Erythranthe guttata HOM05D003693 ORTHO05D004698 3.1e-239 831.6 492 86.2
Nitab4.5_0005367g0010 Nicotiana tabacum HOM05D003693 ORTHO05D004698 5.3e-239 830.9 492 86.2
Oeu014595.1 Olea europaea HOM05D003693 ORTHO05D004698 1.2e-238 829.7 495 86.1
Lj8C726G3 Lonicera japonica HOM05D003693 ORTHO05D004698 4.5e-238 827.8 541 80.4
Gohir.A05G393100 Gossypium hirsutum HOM05D003693 ORTHO05D004698 5.9e-238 827.4 496 85.3
Gorai.012G026300 Gossypium raimondii HOM05D003693 ORTHO05D004698 5.9e-238 827.4 496 85.3
Ciclev10011203m.g Citrus clementina HOM05D003693 ORTHO05D004698 1.0e-237 826.6 493 86.2
Nitab4.5_0001244g0140 Nicotiana tabacum HOM05D003693 ORTHO05D004698 1.0e-237 826.6 492 85.4
GSVIVG01032211001 Vitis vinifera HOM05D003693 ORTHO05D004698 1.7e-237 825.9 566 77.4
Nn2g12199 Nelumbo nucifera HOM05D003693 ORTHO05D004698 2.2e-237 825.5 494 85.8
MSTRG.20559 Avicennia marina HOM05D003693 ORTHO05D004698 6.5e-237 823.9 492 85.4
MD04G1246300 Malus domestica HOM05D003693 ORTHO05D004698 8.5e-237 823.5 493 86.0
TWI18G0649 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 1.9e-236 822.4 494 85.2
Cc02_g28770 Coffea canephora HOM05D003693 ORTHO05D004698 2.5e-236 822.0 488 84.0
COL.COLO4_12338 Corchorus olitorius HOM05D003693 ORTHO05D004698 3.2e-236 821.6 493 84.6
MSTRG.17008 Avicennia marina HOM05D003693 ORTHO05D004698 7.2e-236 820.5 492 85.6
Prupe.6G362600 Prunus persica HOM05D003693 ORTHO05D004698 7.2e-236 820.5 494 85.8
Peaxi162Scf00694g00440 Petunia axillaris HOM05D003693 ORTHO05D004698 9.4e-236 820.1 492 84.6
PGSC0003DMG400006778 Solanum tuberosum HOM05D003693 ORTHO05D004698 9.4e-236 820.1 492 85.2
CAN.G1619.1 Capsicum annuum HOM05D003693 ORTHO05D004698 1.6e-235 819.3 492 84.6
TAR369G0556 Trochodendron aralioides HOM05D003693 ORTHO05D004698 2.1e-235 818.9 493 84.4
Duzib133G0510 Durio zibethinus HOM05D003693 ORTHO05D004698 2.7e-235 818.5 493 83.6
Potri.019G054500 Populus trichocarpa HOM05D003693 ORTHO05D004698 3.6e-235 818.1 493 84.4
TWI36G1545 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 3.6e-235 818.1 493 85.2
Duzib268G0828 Durio zibethinus HOM05D003693 ORTHO05D004698 6.1e-235 817.4 492 83.7
ECA248G0053 Erigeron canadensis HOM05D003693 ORTHO05D004698 1.0e-234 816.6 492 82.9
AUR62023098 Chenopodium quinoa HOM05D003693 ORTHO05D004698 1.4e-234 816.2 493 84.2
Duzib128G1866 Durio zibethinus HOM05D003693 ORTHO05D004698 3.0e-234 815.1 564 76.4
MD12G1263800 Malus domestica HOM05D003693 ORTHO05D004698 3.0e-234 815.1 493 85.2
PSO384G0563 Papaver somniferum HOM05D003693 ORTHO05D004698 3.0e-234 815.1 493 83.6
Sopen01g034800 Solanum pennellii HOM05D003693 ORTHO05D004698 3.0e-234 815.1 492 84.6
Peaxi162Scf00071g01043 Petunia axillaris HOM05D003693 ORTHO05D004698 8.8e-234 813.5 492 84.3
AUR62009420 Chenopodium quinoa HOM05D003693 ORTHO05D004698 1.1e-233 813.1 493 84.0
Solyc01g087870.4 Solanum lycopersicum HOM05D003693 ORTHO05D004698 1.1e-233 813.1 492 84.3
Aqoxy5G04181 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 4.4e-233 811.2 493 83.6
PSO339G5758 Papaver somniferum HOM05D003693 ORTHO05D004698 1.3e-232 809.7 493 83.0
Lsat_1_v5_gn_1_104980 Lactuca sativa HOM05D003693 ORTHO05D004698 1.4e-231 806.2 492 82.7
Lalb_Chr01g0020541 Lupinus albus HOM05D003693 ORTHO05D004698 3.1e-231 805.1 499 83.2
ClCG11G009710 Citrullus lanatus HOM05D003693 ORTHO05D004698 4.1e-231 804.7 495 83.6
Gohir.A12G100800 Gossypium hirsutum HOM05D003693 ORTHO05D004698 4.1e-231 804.7 492 83.7
Gohir.D12G103600 Gossypium hirsutum HOM05D003693 ORTHO05D004698 4.1e-231 804.7 492 83.7
Gorai.008G112800 Gossypium raimondii HOM05D003693 ORTHO05D004698 4.1e-231 804.7 492 83.7
Lalb_Chr03g0038731 Lupinus albus HOM05D003693 ORTHO05D004698 4.1e-231 804.7 509 81.7
FvH4_6g00360 Fragaria vesca HOM05D003693 ORTHO05D004698 5.3e-231 804.3 493 84.2
FAN09G1864 Fragaria x ananassa HOM05D003693 ORTHO05D004698 1.2e-230 803.1 493 84.0
EL10Ac2g04376 Beta vulgaris HOM05D003693 ORTHO05D004698 5.9e-230 800.8 493 83.2
RcHm_v2.0_Chr3g0447661 Rosa chinensis HOM05D003693 ORTHO05D004698 1.3e-229 799.7 493 84.2
Sc10g0000370 Simmondsia chinensis HOM05D003693 ORTHO05D004698 1.3e-229 799.7 492 82.9
Sabra19G0063500 Salix brachista HOM05D003693 ORTHO05D004698 2.2e-229 798.9 530 78.1
FAN05G2538 Fragaria x ananassa HOM05D003693 ORTHO05D004698 2.9e-229 798.5 493 83.8
Glyma.18G243300 Glycine max HOM05D003693 ORTHO05D004698 2.9e-229 798.5 493 82.8
Eucgr.H01402 Eucalyptus grandis HOM05D003693 ORTHO05D004698 5.0e-229 797.7 492 82.9
MBI19_g25011_MAGBIO Magnolia biondii HOM05D003693 ORTHO05D004698 8.5e-229 797.0 499 82.4
Medtr7g080270 Medicago truncatula HOM05D003693 ORTHO05D004698 1.1e-228 796.6 493 82.6
Eucgr.H01630 Eucalyptus grandis HOM05D003693 ORTHO05D004698 3.2e-228 795.0 492 82.7
THA.LOC104808730 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 9.4e-228 793.5 490 83.3
FAN02G0024 Fragaria x ananassa HOM05D003693 ORTHO05D004698 1.2e-227 793.1 493 83.2
HanXRQChr06g0179741 Helianthus annuus HOM05D003693 ORTHO05D004698 1.2e-227 793.1 492 81.9
SHI13710 Sapria himalayana HOM05D003693 ORTHO05D004698 1.2e-227 793.1 494 81.8
SGA_v2.0_scaffold119G32763 Striga asiatica HOM05D003693 ORTHO05D004698 1.2e-227 793.1 492 82.5
CsaV3_2G010560 Cucumis sativus L. HOM05D003693 ORTHO05D004698 6.1e-227 790.8 494 83.0
arahy.Tifrunner.gnm1.ann1.RCZ69X Arachis hypogaea HOM05D003693 ORTHO05D004698 1.4e-226 789.6 493 81.5
Ca_07998_v3 Cicer arietinum L. HOM05D003693 ORTHO05D004698 4.0e-226 788.1 495 81.8
VMungo1383G0289 Vigna mungo HOM05D003693 ORTHO05D004698 4.0e-226 788.1 493 82.6
MELO3C008557.2 Cucumis melo HOM05D003693 ORTHO05D004698 1.2e-225 786.6 519 79.4
PGR119G0062 Punica granatum HOM05D003693 ORTHO05D004698 1.5e-225 786.2 502 80.9
Glyma.09G249100 Glycine max HOM05D003693 ORTHO05D004698 2.6e-225 785.4 493 81.3
SalBow6G5509 Salvia bowleyana HOM05D003693 ORTHO05D004698 2.6e-225 785.4 488 80.3
Sed0016989 Sechium edule HOM05D003693 ORTHO05D004698 5.7e-225 784.3 495 81.8
Thhalv10002424m.g Eutrema salsugineum HOM05D003693 ORTHO05D004698 7.5e-225 783.9 492 81.5
Psat3g102600 Pisum sativum HOM05D003693 ORTHO05D004698 7.5e-225 783.9 494 81.2
Phvul.008G053200 Phaseolus vulgaris HOM05D003693 ORTHO05D004698 9.7e-225 783.5 492 82.5
Lj1g0027377 Lotus japonicus HOM05D003693 ORTHO05D004698 1.3e-224 783.1 498 81.5
SalBow6G6742 Salvia bowleyana HOM05D003693 ORTHO05D004698 1.3e-224 783.1 488 80.1
arahy.Tifrunner.gnm1.ann1.55VZFW Arachis hypogaea HOM05D003693 ORTHO05D004698 1.7e-224 782.7 493 80.9
Aa31LG8G10790 Aethionema arabicum HOM05D003693 ORTHO05D004698 2.8e-224 781.9 495 80.8
TPR.G33878 Trifolium pratense HOM05D003693 ORTHO05D004698 2.8e-224 781.9 492 81.3
unitig_0.g1393 Utricularia gibba HOM05D003693 ORTHO05D004698 4.8e-224 781.2 501 80.2
THA.LOC104821617 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 6.3e-224 780.8 493 81.7
CARHR100130 Cardamine hirsuta HOM05D003693 ORTHO05D004698 1.4e-223 779.6 492 80.9
ATR1096G033 Amborella trichopoda HOM05D003693 ORTHO05D004698 2.4e-223 778.9 498 79.5
Sp3g21850 Schrenkiella parvula HOM05D003693 ORTHO05D004698 4.1e-223 778.1 492 80.7
Ah.10g038580 Amaranthus hybridus HOM05D003693 ORTHO05D004698 1.6e-222 776.2 493 81.1
Haze_19361 Corylus avellana HOM05D003693 ORTHO05D004698 1.6e-222 776.2 607 69.9
CDE04G2718 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 7.7e-222 773.9 495 80.8
BolC3t17596H Brassica oleracea HOM05D003693 ORTHO05D004698 8.5e-221 770.4 493 80.5
A03p43420 Brassica napus HOM05D003693 ORTHO05D004698 1.9e-220 769.2 493 80.1
BraA03t13480Z Brassica rapa HOM05D003693 ORTHO05D004698 2.5e-220 768.8 493 80.1
BcaB03g14607 Brassica carinata HOM05D003693 ORTHO05D004698 3.2e-220 768.5 493 79.9
BcaC01g03357 Brassica carinata HOM05D003693 ORTHO05D004698 4.2e-220 768.1 493 80.1
AT3G24090 Arabidopsis thaliana HOM05D003693 ORTHO05D004698 9.4e-220 766.9 492 79.9
BcaB06g26591 Brassica carinata HOM05D003693 ORTHO05D004698 1.6e-219 766.1 492 79.9
FAN14G5956 Fragaria x ananassa HOM05D003693 ORTHO05D004698 2.1e-219 765.8 474 83.8
C03p53370 Brassica napus HOM05D003693 ORTHO05D004698 4.7e-219 764.6 493 79.9
Carub.0003s2444 Capsella rubella HOM05D003693 ORTHO05D004698 8.0e-219 763.8 492 79.5
AL3G39260 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 2.3e-218 762.3 492 79.1
BcaC06g35626 Brassica carinata HOM05D003693 ORTHO05D004698 2.3e-218 762.3 492 80.1
C07p12800 Brassica napus HOM05D003693 ORTHO05D004698 2.3e-218 762.3 492 80.1
BolC7t41766H Brassica oleracea HOM05D003693 ORTHO05D004698 4.0e-218 761.5 492 80.1
A07p08260 Brassica napus HOM05D003693 ORTHO05D004698 1.2e-217 760.0 492 79.5
BraA07t28609Z Brassica rapa HOM05D003693 ORTHO05D004698 2.6e-217 758.8 492 79.3
PGR031G3615 Punica granatum HOM05D003693 ORTHO05D004698 3.1e-215 751.9 493 77.5
SEGI_39911 Sequoiadendron giganteum HOM05D003693 ORTHO05D004698 2.2e-208 729.2 500 74.8
Actinidia08353 Actinidia chinensis HOM05D003693 ORTHO05D004698 1.7e-205 719.5 417 87.8
SMO301G0028 Selaginella moellendorffii HOM05D003693 ORTHO05D004698 2.3e-205 719.2 494 74.3
Zm00001eb163520 Zea mays HOM05D003693 ORTHO05D004698 2.3e-205 719.2 492 75.8
HPP92_019436 Vanilla planifolia HOM05D003693 ORTHO05D004698 4.3e-204 714.9 493 75.1
TPR.G34077 Trifolium pratense HOM05D003693 ORTHO05D004698 6.1e-203 711.1 517 72.9
Mapoly0131s0027 Marchantia polymorpha HOM05D003693 ORTHO05D004698 1.7e-197 693.0 502 71.5
Pp3c2_32740 Physcomitrium patens HOM05D003693 ORTHO05D004698 2.8e-195 685.6 496 71.6
CDE07G0727 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 2.3e-194 682.6 492 73.4
SalBow5G4957 Salvia bowleyana HOM05D003693 ORTHO05D004698 2.2e-192 676.0 504 72.4
DCAR_029706 Daucus carota HOM05D003693 ORTHO05D004698 8.6e-189 664.1 455 76.3
AagrBONN_evm.TU.Sc2ySwM_344.1788 Anthoceros agrestis HOM05D003693 ORTHO05D004698 9.5e-188 660.6 509 68.0
Lj9A641G59 Lonicera japonica HOM05D003693 ORTHO05D004698 3.7e-184 648.7 492 70.5
CDE08G0281 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 4.7e-179 631.7 494 69.4
AL8G20490 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 7.1e-175 617.8 428 75.9
Eucgr.H01403 Eucalyptus grandis HOM05D003693 ORTHO05D004698 2.5e-156 556.2 410 72.9
Lsat_1_v5_gn_3_45201 Lactuca sativa HOM05D003693 ORTHO05D004698 6.2e-147 525.0 386 70.2
Gohir.D04G022000 Gossypium hirsutum HOM05D003693 ORTHO05D004698 1.9e-143 513.5 303 86.1
MCO09G229 Micromonas commoda HOM05D003693 ORTHO05D004698 9.3e-143 511.1 512 53.1
Nitab4.5_0001676g0080 Nicotiana tabacum HOM05D003693 ORTHO05D004698 7.4e-140 501.5 312 82.7
Pp3c1_10100 Physcomitrium patens HOM05D003693 ORTHO05D004698 4.1e-138 495.7 356 72.2
Cre08.g375500 Chlamydomonas reinhardtii HOM05D003693 ORTHO05D004698 2.5e-135 486.5 504 51.0
Eucgr.H01633 Eucalyptus grandis HOM05D003693 ORTHO05D004698 3.9e-133 479.2 489 58.9
PRCOL_00001226 Prasinoderma coloniale HOM05D003693 ORTHO05D004698 3.3e-132 476.1 518 51.5
Eucgr.H01405 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.1e-124 451.1 456 59.0
Aqoxy1G02791 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 7.2e-119 431.8 302 74.5
Eucgr.H01634 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.6e-118 430.6 414 60.6
Haze_26883 Corylus avellana HOM05D003693 ORTHO05D004698 6.3e-115 418.7 566 42.9
AL8G20570 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 1.9e-111 407.1 496 50.4
Aqoxy2G01319 Aquilegia oxysepala HOM05D003693 ORTHO05D031300 5.0e-104 382.5 228 86.8
Cc00_g27460 Coffea canephora HOM05D003693 ORTHO05D004698 1.5e-92 344.4 208 83.7
Cc00_g28470 Coffea canephora HOM05D003693 ORTHO05D004698 1.6e-89 334.3 196 84.7
Actinidia19423 Actinidia chinensis HOM05D003693 ORTHO05D004698 1.7e-88 330.9 245 73.9
CDE04G0915 Ceratophyllum demersum HOM05D003693 ORTHO05D021141 2.5e-87 327.0 194 81.4
CDE07G2079 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 2.2e-83 313.9 213 75.1
AagrBONN_evm.TU.Sc2ySwM_340.50 Anthoceros agrestis HOM05D003693 ORTHO05D004698 5.4e-74 282.7 246 61.4
Cpa.g.sc39.19 Carica papaya HOM05D003693 ORTHO05D004698 4.7e-70 269.6 149 92.6
CSS0008601 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 3.7e-67 260.0 149 87.2
CSS0022704 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 4.9e-67 259.6 149 87.2
Manes.13G004500 Manihot esculenta HOM05D003693 ORTHO05D004698 1.1e-61 241.9 481 38.5
MD04G1173900 Malus domestica HOM05D003693 ORTHO05D021141 5.2e-61 239.6 159 77.4
RcHm_v2.0_Chr4g0412421 Rosa chinensis HOM05D003693 ORTHO05D004698 4.2e-58 229.9 147 77.6
CSS0029083 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 6.2e-54 216.1 149 76.5
Os12g0131100 Oryza sativa ssp. japonica HOM05D003693 ORTHO05D004698 7.6e-52 209.1 121 84.3
CSS0010682 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 2.8e-46 190.7 121 78.5
Nitab4.5_0001676g0090 Nicotiana tabacum HOM05D003693 ORTHO05D021141 1.1e-39 168.7 88 90.9
CDE01G0629 Ceratophyllum demersum HOM05D000880 ORTHO05D007053 4.8e-38 163.3 91 83.5
Dinv23140 Davidia involucrata HOM05D004830 ORTHO05D005310 1.3e-30 138.7 74 93.2
CDE02G0831 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 1.3e-24 118.6 70 85.7
Actinidia23248 Actinidia chinensis HOM05D003693 ORTHO05D021141 1.8e-24 118.2 82 78.0
Os11g0133700 Oryza sativa ssp. japonica HOM05D003693 ORTHO05D031300 3.0e-24 117.5 89 67.4
Os12g0131150 Oryza sativa ssp. japonica HOM05D003693 ORTHO05D031300 3.0e-24 117.5 89 67.4
Peaxi162Scf00071g01042 Petunia axillaris HOM05D003693 ORTHO05D021141 6.9e-21 106.3 82 69.5
Zm00001eb405240 Zea mays HOM05D003693 ORTHO05D004698 5.9e-20 103.2 86 64.0
EL10As4g23424 Beta vulgaris HOM05D003693 ORTHO05D088905 4.8e-14 83.6 107 47.7
Cpa.g.c45131 Carica papaya HOM05D003693 ORTHO05D004698 5.0e-11 73.6 35 94.3
HPP92_019410 Vanilla planifolia HOM05D003693 ORTHO05D004698 4.2e-10 70.5 79 54.4
EL10Ac2g04375 Beta vulgaris HOM05D003693 ORTHO05D021141 1.4e-08 65.5 42 66.7
Lj3g0017821 Lotus japonicus HOM05D003693 ORTHO05D236454 1.8e-08 65.1 40 75.0
Lsat_1_v5_gn_3_99160 Lactuca sativa HOM05D003693 ORTHO05D231443 1.5e-07 62.0 56 58.9
Aqoxy7G03423 Aquilegia oxysepala HOM05D000586 ORTHO05D003356 1.3e-06 58.9 130 33.1


User provided reference genes

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