Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv09117 Davidia involucrata HOM05D000240 ORTHO05D000032 4.5e-83 311.2 157 100.0
Dinv21336 Davidia involucrata HOM05D000184 ORTHO05D000032 1.0e-34 150.6 131 66.4
Dinv22120 Davidia involucrata HOM05D000240 ORTHO05D183166 2.7e-27 125.9 65 93.8
Dinv24687 Davidia involucrata HOM05D000240 ORTHO05D185531 4.7e-16 88.6 58 77.6
Dinv23473 Davidia involucrata HOM05D000240 ORTHO05D001153 8.0e-16 87.8 52 82.7
Dinv10477 Davidia involucrata HOM05D000240 ORTHO05D181147 1.2e-14 84.0 58 74.1
Hma1.2p1_0066F.1_g035890 Hydrangea macrophylla HOM05D000240 ORTHO05D001153 1.1e-12 77.4 52 76.9
Lj5C191G7 Lonicera japonica HOM05D000240 ORTHO05D001153 1.8e-12 76.6 52 73.1
Dinv42014 Davidia involucrata HOM05D000240 ORTHO05D001153 2.4e-12 76.3 51 72.5
Cc02_g17060 Coffea canephora HOM05D000240 ORTHO05D001153 3.1e-12 75.9 52 71.2
Lj9C381G11 Lonicera japonica HOM05D000240 ORTHO05D001153 7.0e-12 74.7 52 69.2
Nitab4.5_0011132g0010 Nicotiana tabacum HOM05D000240 ORTHO05D001153 1.6e-11 73.6 52 63.5
TAR628G1129 Trochodendron aralioides HOM05D000240 ORTHO05D001153 2.7e-11 72.8 54 68.5
Nitab4.5_0002723g0070 Nicotiana tabacum HOM05D000240 ORTHO05D001153 7.8e-11 71.2 51 64.7
Actinidia27860 Actinidia chinensis HOM05D000240 ORTHO05D001153 1.3e-10 70.5 53 66.0
Solyc10g054080.3 Solanum lycopersicum HOM05D000240 ORTHO05D001153 1.3e-10 70.5 52 63.5
Sopen10g023930 Solanum pennellii HOM05D000240 ORTHO05D001153 1.3e-10 70.5 52 63.5
Nitab4.5_0003006g0010 Nicotiana tabacum HOM05D000240 ORTHO05D001153 2.9e-10 69.3 52 61.5
Solyc01g110190.4 Solanum lycopersicum HOM05D000240 ORTHO05D001153 2.9e-10 69.3 52 59.6
Sopen01g052350 Solanum pennellii HOM05D000240 ORTHO05D001153 2.9e-10 69.3 52 59.6
Nn6g32210 Nelumbo nucifera HOM05D000240 ORTHO05D001153 3.8e-10 68.9 54 63.0
CAN.G170.85 Capsicum annuum HOM05D000240 ORTHO05D001153 8.6e-10 67.8 49 63.3
CAN.G1.58 Capsicum annuum HOM05D000240 ORTHO05D001153 1.1e-09 67.4 52 59.6
Nitab4.5_0000589g0030 Nicotiana tabacum HOM05D000240 ORTHO05D001153 1.1e-09 67.4 52 59.6
TAR376G0052 Trochodendron aralioides HOM05D000240 ORTHO05D001153 1.5e-09 67.0 54 61.1
Hma1.2p1_0851F.1_g228305 Hydrangea macrophylla HOM05D000240 ORTHO05D001153 1.9e-09 66.6 52 61.5
Manes.11G088000 Manihot esculenta HOM05D000240 ORTHO05D001153 1.9e-09 66.6 54 66.7
TWI75G0793 Tripterygium wilfordii HOM05D000240 ORTHO05D001153 2.5e-09 66.2 54 63.0
Lsat_1_v5_gn_7_92061 Lactuca sativa HOM05D000240 ORTHO05D001153 3.3e-09 65.9 50 72.0
Solyc11g044880.3 Solanum lycopersicum HOM05D000240 ORTHO05D001153 3.3e-09 65.9 53 60.4
Sopen11g020380 Solanum pennellii HOM05D000240 ORTHO05D001153 3.3e-09 65.9 53 60.4
CsaV3_2G015170 Cucumis sativus L. HOM05D000240 ORTHO05D001153 4.3e-09 65.5 54 66.7
HanXRQChr04g0127671 Helianthus annuus HOM05D000240 ORTHO05D001153 7.3e-09 64.7 54 64.8
Dinv32660 Davidia involucrata HOM05D005494 ORTHO05D006689 9.5e-09 64.3 57 61.4
Nn5g29194 Nelumbo nucifera HOM05D000240 ORTHO05D001153 9.5e-09 64.3 54 61.1
Cpa.g.sc150.41 Carica papaya HOM05D000240 ORTHO05D001153 1.2e-08 63.9 55 67.3
ClCG11G004000 Citrullus lanatus HOM05D000240 ORTHO05D001153 1.2e-08 63.9 54 64.8
GSVIVG01024203001 Vitis vinifera HOM05D000240 ORTHO05D001153 1.2e-08 63.9 54 64.8
Haze_02306 Corylus avellana HOM05D000240 ORTHO05D001153 2.1e-08 63.2 54 63.0
Dinv18651 Davidia involucrata HOM05D003641 ORTHO05D004915 2.1e-08 63.2 52 63.5
Peaxi162Scf00684g00222 Petunia axillaris HOM05D000240 ORTHO05D001153 2.8e-08 62.8 47 66.0
Aqoxy6G02405 Aquilegia oxysepala HOM05D000240 ORTHO05D001153 3.6e-08 62.4 60 56.7
CSS0018000 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D001153 3.6e-08 62.4 53 60.4
COL.COLO4_26016 Corchorus olitorius HOM05D000240 ORTHO05D001153 3.6e-08 62.4 54 61.1
CANSAT11G1038 Cannabis sativa HOM05D000240 ORTHO05D001153 8.0e-08 61.2 55 65.5
Cfa005076 Carpinus fangiana HOM05D000240 ORTHO05D001153 8.0e-08 61.2 54 61.1
MELO3C023342.2 Cucumis melo HOM05D000240 ORTHO05D001153 8.0e-08 61.2 54 63.0
Nitab4.5_0005128g0010 Nicotiana tabacum HOM05D000240 ORTHO05D001153 8.0e-08 61.2 52 63.5
Sed0002918 Sechium edule HOM05D000240 ORTHO05D001153 8.0e-08 61.2 54 63.0
Lj1g0006393 Lotus japonicus HOM05D000240 ORTHO05D001153 1.0e-07 60.8 53 62.3
Nitab4.5_0001317g0090 Nicotiana tabacum HOM05D000240 ORTHO05D001153 1.0e-07 60.8 52 61.5
QL11p045641 Quercus lobata HOM05D000240 ORTHO05D001153 1.0e-07 60.8 56 64.3
CiPaw.05G071900 Carya illinoinensis HOM05D000240 ORTHO05D001153 1.4e-07 60.5 54 63.0
PGR142G1203 Punica granatum HOM05D000240 ORTHO05D001153 1.4e-07 60.5 54 61.1
Eucgr.I01311 Eucalyptus grandis HOM05D000240 ORTHO05D001153 1.8e-07 60.1 55 61.8
Dinv18648 Davidia involucrata HOM05D003641 ORTHO05D004915 2.3e-07 59.7 52 61.5
Dinv26263 Davidia involucrata HOM05D003641 ORTHO05D004915 2.3e-07 59.7 52 61.5
Duzib052G0374 Durio zibethinus HOM05D000240 ORTHO05D001153 2.3e-07 59.7 54 59.3
ECA236G3168 Erigeron canadensis HOM05D000240 ORTHO05D001153 2.3e-07 59.7 50 66.0
Manes.04G085200 Manihot esculenta HOM05D000240 ORTHO05D001153 2.3e-07 59.7 47 70.2
Duzib132G0039 Durio zibethinus HOM05D000240 ORTHO05D001153 3.0e-07 59.3 54 59.3
Duzib248G1652 Durio zibethinus HOM05D000240 ORTHO05D001153 3.0e-07 59.3 53 60.4
Ca_15343_v3 Cicer arietinum L. HOM05D000240 ORTHO05D001153 4.0e-07 58.9 54 63.0
FvH4_2g10080 Fragaria vesca HOM05D000240 ORTHO05D001153 4.0e-07 58.9 53 62.3
FAN24G1691 Fragaria x ananassa HOM05D000240 ORTHO05D001153 4.0e-07 58.9 53 62.3
Gohir.D13G029200 Gossypium hirsutum HOM05D000240 ORTHO05D001153 4.0e-07 58.9 54 57.4
Gorai.013G033200 Gossypium raimondii HOM05D000240 ORTHO05D001153 4.0e-07 58.9 54 57.4
MBI05_g10541_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D001153 4.0e-07 58.9 52 55.8
Dinv24005 Davidia involucrata HOM05D000240 ORTHO05D027588 5.2e-07 58.5 59 57.6
Oeu008576.1 Olea europaea HOM05D000240 ORTHO05D001153 5.2e-07 58.5 54 59.3
Phvul.009G004100 Phaseolus vulgaris HOM05D000240 ORTHO05D001153 5.2e-07 58.5 54 57.4
Hund06267 Selenicereus undatus HOM05D000240 ORTHO05D001153 5.2e-07 58.5 57 56.1
Gohir.A13G031200 Gossypium hirsutum HOM05D000240 ORTHO05D001153 1.2e-06 57.4 54 55.6
VMungo1309G1100 Vigna mungo HOM05D000240 ORTHO05D001153 1.2e-06 57.4 54 59.3
Glyma.04G009100 Glycine max HOM05D000240 ORTHO05D001153 1.5e-06 57.0 55 61.8
Gohir.A01G003700 Gossypium hirsutum HOM05D000240 ORTHO05D001153 1.5e-06 57.0 51 60.8
Gohir.A04G123800 Gossypium hirsutum HOM05D000240 ORTHO05D001153 1.5e-06 57.0 53 56.6
Gohir.D01G003701 Gossypium hirsutum HOM05D000240 ORTHO05D001153 1.5e-06 57.0 51 60.8
Gohir.D04G165900 Gossypium hirsutum HOM05D000240 ORTHO05D001153 1.5e-06 57.0 53 56.6
Gorai.002G004600 Gossypium raimondii HOM05D000240 ORTHO05D001153 1.5e-06 57.0 51 60.8
Gorai.012G154300 Gossypium raimondii HOM05D000240 ORTHO05D001153 1.5e-06 57.0 53 56.6
RcHm_v2.0_Chr6g0267011 Rosa chinensis HOM05D000240 ORTHO05D001153 1.5e-06 57.0 53 60.4
ClCG02G004660 Citrullus lanatus HOM05D000240 ORTHO05D001153 2.0e-06 56.6 47 66.0
Rhsim05G0069000 Rhododendron simsii HOM05D000240 ORTHO05D001153 2.0e-06 56.6 56 62.5
FAN15G0690 Fragaria x ananassa HOM05D000240 ORTHO05D001153 2.6e-06 56.2 53 58.5
HanXRQChr16g0506381 Helianthus annuus HOM05D000240 ORTHO05D001153 2.6e-06 56.2 49 65.3
MBI16_g03089_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D027588 2.6e-06 56.2 52 51.9
VMungo1127G2069 Vigna mungo HOM05D000240 ORTHO05D001153 2.6e-06 56.2 52 61.5
Prupe.8G087800 Prunus persica HOM05D000240 ORTHO05D001153 3.4e-06 55.8 54 59.3
Sed0023290 Sechium edule HOM05D000240 ORTHO05D001153 3.4e-06 55.8 53 60.4
CiPaw.06G130700 Carya illinoinensis HOM05D000240 ORTHO05D001153 7.5e-06 54.7 54 55.6
Psat5g003640 Pisum sativum HOM05D000240 ORTHO05D001153 7.5e-06 54.7 53 60.4
Phvul.011G040700 Phaseolus vulgaris HOM05D000240 ORTHO05D001153 9.8e-06 54.3 52 59.6
Sed0005078 Sechium edule HOM05D000240 ORTHO05D001153 9.8e-06 54.3 47 61.7
TPR.G32177 Trifolium pratense HOM05D000240 ORTHO05D001153 9.8e-06 54.3 53 58.5


User provided reference genes

Program Settings