Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv09099 Davidia involucrata HOM05D000029 ORTHO05D000006 7.2e-71 270.4 129 100.0
Dinv13162 Davidia involucrata HOM05D000003 ORTHO05D000006 2.0e-33 146.0 78 89.7
Potri.003G163300 Populus trichocarpa HOM05D000029 ORTHO05D006987 5.6e-15 84.7 54 74.1
Dinv09209 Davidia involucrata HOM05D000029 ORTHO05D006987 9.5e-15 84.0 43 90.7
Manes.08G102000 Manihot esculenta HOM05D000029 ORTHO05D006987 1.2e-14 83.6 43 86.0
FvH4_4g22780 Fragaria vesca HOM05D000094 ORTHO05D006987 2.1e-14 82.8 48 79.2
FAN07G0625 Fragaria x ananassa HOM05D000094 ORTHO05D006987 2.1e-14 82.8 48 79.2
FAN12G0671 Fragaria x ananassa HOM05D000094 ORTHO05D006987 2.1e-14 82.8 48 79.2
FAN17G2476 Fragaria x ananassa HOM05D006427 ORTHO05D006987 2.1e-14 82.8 48 79.2
RcHm_v2.0_Chr4g0429001 Rosa chinensis HOM05D000094 ORTHO05D006987 2.1e-14 82.8 48 79.2
Sabra01G0046300 Salix brachista HOM05D000029 ORTHO05D006987 2.1e-14 82.8 54 74.1
GSVIVG01001078001 Vitis vinifera HOM05D000029 ORTHO05D006987 2.1e-14 82.8 43 88.4
Prupe.1G216600 Prunus persica HOM05D000029 ORTHO05D006987 2.8e-14 82.4 53 71.7
Nn3g16290 Nelumbo nucifera HOM05D000029 ORTHO05D006987 3.6e-14 82.0 50 72.0
Sabra03G0118800 Salix brachista HOM05D000029 ORTHO05D006987 3.6e-14 82.0 43 86.0
TPR.G4541 Trifolium pratense HOM05D000029 ORTHO05D006987 3.6e-14 82.0 48 75.0
Lalb_Chr04g0258111 Lupinus albus HOM05D000094 ORTHO05D006987 4.7e-14 81.6 43 86.0
Duzib052G0468 Durio zibethinus HOM05D000029 ORTHO05D006987 6.2e-14 81.3 43 86.0
Potri.001G066700 Populus trichocarpa HOM05D000029 ORTHO05D006987 6.2e-14 81.3 54 72.2
QL03p049603 Quercus lobata HOM05D000029 ORTHO05D006987 6.2e-14 81.3 43 83.7
Psat3g190240 Pisum sativum HOM05D000029 ORTHO05D006987 8.0e-14 80.9 43 81.4
Ca_07074_v3 Cicer arietinum L. HOM05D000094 ORTHO05D006987 1.1e-13 80.5 48 75.0
Dinv19143 Davidia involucrata HOM05D000094 ORTHO05D006987 1.1e-13 80.5 43 86.0
Lalb_Chr17g0336471 Lupinus albus HOM05D000029 ORTHO05D006987 1.1e-13 80.5 43 81.4
MD13G1129700 Malus domestica HOM05D000029 ORTHO05D006987 1.1e-13 80.5 53 71.7
COL.COLO4_21788 Corchorus olitorius HOM05D000029 ORTHO05D006987 1.4e-13 80.1 43 83.7
Medtr7g020850 Medicago truncatula HOM05D000029 ORTHO05D006987 1.4e-13 80.1 48 72.9
Ciclev10005409m.g Citrus clementina HOM05D000094 ORTHO05D006987 1.8e-13 79.7 43 81.4
Nn4g22150 Nelumbo nucifera HOM05D000029 ORTHO05D006987 1.8e-13 79.7 54 70.4
Nitab4.5_0000049g0100 Nicotiana tabacum HOM05D000094 ORTHO05D006987 1.8e-13 79.7 43 86.0
Sc11g0000140 Simmondsia chinensis HOM05D000029 ORTHO05D006987 1.8e-13 79.7 49 77.6
TWI18G0498 Tripterygium wilfordii HOM05D000029 ORTHO05D006987 1.8e-13 79.7 43 86.0
CSS0004805 Camellia sinensis var. sinensis HOM05D000094 ORTHO05D006987 2.3e-13 79.3 43 81.4
CSS0031430 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D006987 2.3e-13 79.3 43 81.4
MD16G1130000 Malus domestica HOM05D000094 ORTHO05D006987 2.3e-13 79.3 53 69.8
Hund25505 Selenicereus undatus HOM05D000029 ORTHO05D006987 2.3e-13 79.3 45 80.0
TWI36G1620 Tripterygium wilfordii HOM05D000094 ORTHO05D006987 2.3e-13 79.3 43 83.7
TAR371G1278 Trochodendron aralioides HOM05D006427 ORTHO05D006987 2.3e-13 79.3 54 68.5
EL10Ac6g13599 Beta vulgaris HOM05D000029 ORTHO05D006987 3.1e-13 79.0 45 82.2
Cfa009442 Carpinus fangiana HOM05D000094 ORTHO05D006987 3.1e-13 79.0 43 81.4
TAR622G0344 Trochodendron aralioides HOM05D000029 ORTHO05D006987 3.1e-13 79.0 43 81.4
Haze_12493 Corylus avellana HOM05D000094 ORTHO05D006987 4.0e-13 78.6 53 71.7
Duzib132G0701 Durio zibethinus HOM05D000029 ORTHO05D006987 5.2e-13 78.2 43 81.4
Atru.chr12.1403 Acer truncatum HOM05D000094 ORTHO05D006987 6.8e-13 77.8 43 81.4
CAN.G302.4 Capsicum annuum HOM05D000094 ORTHO05D006987 6.8e-13 77.8 48 77.1
Lj6C837T3 Lonicera japonica HOM05D000029 ORTHO05D006987 6.8e-13 77.8 43 79.1
Nitab4.5_0002515g0020 Nicotiana tabacum HOM05D000094 ORTHO05D006987 6.8e-13 77.8 41 87.8
PGSC0003DMG400002250 Solanum tuberosum HOM05D000094 ORTHO05D006987 6.8e-13 77.8 43 83.7
Ah.02g131510 Amaranthus hybridus HOM05D002780 ORTHO05D003254 8.9e-13 77.4 45 77.8
CSS0040803 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D006987 8.9e-13 77.4 43 81.4
Peaxi162Scf00128g01754 Petunia axillaris HOM05D000094 ORTHO05D006987 8.9e-13 77.4 43 83.7
Duzib248G0660 Durio zibethinus HOM05D000029 ORTHO05D006987 1.2e-12 77.0 41 85.4
CiPaw.05G102100 Carya illinoinensis HOM05D000029 ORTHO05D006987 1.5e-12 76.6 48 70.8
THA.LOC104825465 Tarenaya hassleriana HOM05D000029 ORTHO05D006987 1.5e-12 76.6 43 79.1
Solyc05g023760.3 Solanum lycopersicum HOM05D000094 ORTHO05D006987 2.0e-12 76.3 43 81.4
Sopen05g018380 Solanum pennellii HOM05D000094 ORTHO05D006987 2.0e-12 76.3 43 81.4
Glyma.18G282100 Glycine max HOM05D000029 ORTHO05D006987 2.6e-12 75.9 43 76.7
Phvul.008G019200 Phaseolus vulgaris HOM05D000029 ORTHO05D006987 2.6e-12 75.9 43 79.1
TAR629G2019 Trochodendron aralioides HOM05D000029 ORTHO05D006987 2.6e-12 75.9 43 79.1
DCAR_024629 Daucus carota HOM05D000029 ORTHO05D006987 3.4e-12 75.5 43 81.4
MBI07_g07336_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D006987 3.4e-12 75.5 43 79.1
PSO017G0690 Papaver somniferum HOM05D000029 ORTHO05D006987 3.4e-12 75.5 54 68.5
Glyma.08G257700 Glycine max HOM05D000029 ORTHO05D006987 4.4e-12 75.1 43 74.4
Lsat_1_v5_gn_4_1681 Lactuca sativa HOM05D000029 ORTHO05D006987 4.4e-12 75.1 43 74.4
arahy.Tifrunner.gnm1.ann1.5FYJ3P Arachis hypogaea HOM05D000029 ORTHO05D006987 5.8e-12 74.7 43 74.4
arahy.Tifrunner.gnm1.ann1.GED73I Arachis hypogaea HOM05D000029 ORTHO05D006987 5.8e-12 74.7 43 74.4
C02p06040 Brassica napus HOM05D000029 ORTHO05D006987 5.8e-12 74.7 48 66.7
Cc11_g15100 Coffea canephora HOM05D000029 ORTHO05D006987 5.8e-12 74.7 43 74.4
VMungo1383G3495 Vigna mungo HOM05D000094 ORTHO05D006987 5.8e-12 74.7 43 76.7
CANSAT01G1549 Cannabis sativa HOM05D000029 ORTHO05D006987 7.5e-12 74.3 48 68.8
CiPaw.06G108800 Carya illinoinensis HOM05D000029 ORTHO05D006987 7.5e-12 74.3 48 68.8
Lj1g0019881 Lotus japonicus HOM05D000094 ORTHO05D006987 7.5e-12 74.3 43 74.4
Rhsim12G0017900 Rhododendron simsii HOM05D000029 ORTHO05D006987 7.5e-12 74.3 45 73.3
Aqoxy5G03159 Aquilegia oxysepala HOM05D000029 ORTHO05D006987 9.8e-12 73.9 54 63.0
BcaNung01876 Brassica carinata HOM05D000029 ORTHO05D006987 9.8e-12 73.9 43 74.4
A02p01830 Brassica napus HOM05D000029 ORTHO05D006987 9.8e-12 73.9 43 74.4
BraA02t05157Z Brassica rapa HOM05D000029 ORTHO05D006987 9.8e-12 73.9 43 74.4
PSO478G4799 Papaver somniferum HOM05D000029 ORTHO05D006987 9.8e-12 73.9 43 76.7
PGR119G2412 Punica granatum HOM05D000094 ORTHO05D006987 9.8e-12 73.9 48 68.8
BolC2t06546H Brassica oleracea HOM05D000029 ORTHO05D006987 1.3e-11 73.6 43 72.1
Manes.09G187402 Manihot esculenta HOM05D000094 ORTHO05D006987 1.3e-11 73.6 43 74.4
BcaNung01165 Brassica carinata HOM05D000094 ORTHO05D006987 1.7e-11 73.2 43 72.1
AUR62005708 Chenopodium quinoa HOM05D000109 ORTHO05D006987 1.7e-11 73.2 45 75.6
AUR62028847 Chenopodium quinoa HOM05D000109 ORTHO05D006987 1.7e-11 73.2 45 75.6
Sed0022664 Sechium edule HOM05D000094 ORTHO05D006987 1.7e-11 73.2 51 68.6
AT5G13290 Arabidopsis thaliana HOM05D000029 ORTHO05D006987 2.2e-11 72.8 43 69.8
BolC9t59218H Brassica oleracea HOM05D000029 ORTHO05D006987 2.2e-11 72.8 43 69.8
Thhalv10013721m.g Eutrema salsugineum HOM05D000029 ORTHO05D006987 2.2e-11 72.8 43 69.8
Gohir.A04G100700 Gossypium hirsutum HOM05D000029 ORTHO05D006987 2.2e-11 72.8 43 76.7
Gohir.D04G140000 Gossypium hirsutum HOM05D000029 ORTHO05D006987 2.2e-11 72.8 43 76.7
Gorai.012G124900 Gossypium raimondii HOM05D000029 ORTHO05D006987 2.2e-11 72.8 43 76.7
vmacro01025 Vaccinium macrocarpon HOM05D000029 ORTHO05D006987 2.2e-11 72.8 45 71.1
SalBow2G0268 Salvia bowleyana HOM05D000029 ORTHO05D006987 3.7e-11 72.0 45 68.9
A10p24920 Brassica napus HOM05D000029 ORTHO05D006987 4.9e-11 71.6 43 69.8
BraA10t44554Z Brassica rapa HOM05D000029 ORTHO05D006987 4.9e-11 71.6 43 69.8
ClCG06G001750 Citrullus lanatus HOM05D006427 ORTHO05D006987 4.9e-11 71.6 43 76.7
Cpa.g.sc1571.2 Carica papaya HOM05D000094 ORTHO05D006987 6.4e-11 71.2 41 78.0
AL6G23910 Arabidopsis lyrata HOM05D000029 ORTHO05D006987 8.3e-11 70.9 43 67.4
MELO3C022355.2 Cucumis melo HOM05D000029 ORTHO05D006987 8.3e-11 70.9 43 76.7
Oeu019439.1 Olea europaea HOM05D000029 ORTHO05D006987 8.3e-11 70.9 43 72.1
Oeu019441.1 Olea europaea HOM05D000029 ORTHO05D006987 8.3e-11 70.9 43 72.1
BcaC04g19125 Brassica carinata HOM05D000029 ORTHO05D006987 1.1e-10 70.5 43 67.4
C03p06810 Brassica napus HOM05D000029 ORTHO05D006987 1.1e-10 70.5 43 69.8
C09p63790 Brassica napus HOM05D000029 ORTHO05D006987 1.1e-10 70.5 43 67.4
BolC3t13194H Brassica oleracea HOM05D000029 ORTHO05D006987 1.1e-10 70.5 43 69.8
ClCG07G011880 Citrullus lanatus HOM05D000094 ORTHO05D006987 1.1e-10 70.5 41 73.2
MELO3C017812.2 Cucumis melo HOM05D000094 ORTHO05D006987 1.1e-10 70.5 41 73.2
CsaV3_4G002280 Cucumis sativus L. HOM05D000094 ORTHO05D006987 1.1e-10 70.5 41 73.2
BcaB01g05365 Brassica carinata HOM05D000029 ORTHO05D006987 1.4e-10 70.1 43 69.8
A03p05910 Brassica napus HOM05D000029 ORTHO05D006987 1.4e-10 70.1 43 69.8
BraA03t09929Z Brassica rapa HOM05D000029 ORTHO05D006987 1.4e-10 70.1 43 69.8
CARHR200150 Cardamine hirsuta HOM05D000029 ORTHO05D006987 1.4e-10 70.1 43 67.4
Sp6g30700 Schrenkiella parvula HOM05D000029 ORTHO05D006987 1.9e-10 69.7 43 65.1
Actinidia22122 Actinidia chinensis HOM05D000029 ORTHO05D006987 2.4e-10 69.3 43 74.4
Aa31LG3G14370 Aethionema arabicum HOM05D000029 ORTHO05D006987 2.4e-10 69.3 43 67.4
Actinidia30592 Actinidia chinensis HOM05D000029 ORTHO05D006987 3.2e-10 68.9 43 72.1
CsaV3_6G007770 Cucumis sativus L. HOM05D000029 ORTHO05D006987 3.2e-10 68.9 43 74.4
Carub.0006s1146 Capsella rubella HOM05D000029 ORTHO05D006987 5.4e-10 68.2 42 66.7
Eucgr.B03552 Eucalyptus grandis HOM05D000029 ORTHO05D006987 5.4e-10 68.2 42 73.8
SGA_v2.0_scaffold80G25941 Striga asiatica HOM05D000029 ORTHO05D006987 5.4e-10 68.2 43 74.4
CDE02G3873 Ceratophyllum demersum HOM05D000029 ORTHO05D006987 9.2e-10 67.4 48 60.4
Sed0002308 Sechium edule HOM05D000094 ORTHO05D006987 9.2e-10 67.4 41 68.3
ATR0582G032 Amborella trichopoda HOM05D000029 ORTHO05D006987 1.6e-09 66.6 43 69.8
MSTRG.460 Avicennia marina HOM05D000029 ORTHO05D006987 1.6e-09 66.6 41 73.2
Migut.K01065 Erythranthe guttata HOM05D000029 ORTHO05D006987 2.0e-09 66.2 44 68.2
Sed0024975 Sechium edule HOM05D000029 ORTHO05D006987 4.6e-09 65.1 43 67.4
HPP92_011737 Vanilla planifolia HOM05D000029 ORTHO05D006987 1.7e-08 63.2 53 52.8
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 2.3e-08 62.8 35 85.7
SEGI_04370 Sequoiadendron giganteum HOM05D000029 ORTHO05D006987 3.9e-08 62.0 41 65.9
ECA234G1014 Erigeron canadensis HOM05D001362 ORTHO05D001310 1.5e-07 60.1 48 62.5
Zm00001eb142560 Zea mays HOM05D000094 ORTHO05D006987 1.5e-07 60.1 42 64.3
HanXRQChr12g0385731 Helianthus annuus HOM05D000029 ORTHO05D006987 2.5e-07 59.3 49 57.1
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 3.6e-06 55.5 35 74.3
Os01g0927500 Oryza sativa ssp. japonica HOM05D000094 ORTHO05D006987 3.6e-06 55.5 53 47.2
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 6.2e-06 54.7 35 71.4


User provided reference genes

Program Settings