Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 2.1e-264 915.2 480 100.0
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 2.7e-192 675.6 442 81.4
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 1.1e-188 663.7 481 73.6
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 1.8e-188 662.9 454 77.1
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 3.8e-186 655.2 458 75.8
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 1.5e-182 643.3 452 74.6
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 2.5e-177 625.9 456 73.5
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 2.8e-176 622.5 454 71.6
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 1.0e-175 620.5 472 71.4
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 3.2e-172 609.0 445 72.6
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 3.5e-171 605.5 451 70.5
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 3.3e-169 599.0 457 69.8
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 7.3e-169 597.8 455 70.5
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 6.2e-168 594.7 470 70.2
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 1.4e-167 593.6 485 68.0
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 3.1e-167 592.4 452 70.1
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 4.0e-167 592.0 447 73.2
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 3.4e-166 589.0 457 69.4
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 4.4e-166 588.6 457 69.1
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 4.9e-165 585.1 456 68.9
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 4.9e-165 585.1 456 69.1
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 3.5e-163 578.9 506 64.4
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 3.3e-161 572.4 457 68.1
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 7.3e-161 571.2 483 65.2
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 1.2e-160 570.5 449 67.9
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 4.7e-160 568.5 451 68.5
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 1.4e-159 567.0 459 65.8
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 6.8e-159 564.7 455 66.6
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 6.8e-159 564.7 451 67.6
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 8.9e-159 564.3 464 65.7
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 4.4e-158 562.0 454 67.8
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 9.9e-158 560.8 454 66.7
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 1.7e-157 560.1 485 65.8
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 5.1e-154 548.5 456 66.0
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 2.5e-153 546.2 454 63.9
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 9.6e-153 544.3 453 65.3
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 2.1e-152 543.1 452 65.5
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 2.1e-152 543.1 458 64.4
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 4.7e-152 542.0 451 64.3
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 6.2e-152 541.6 452 66.8
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 6.2e-152 541.6 456 65.4
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 1.4e-151 540.4 461 63.6
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 2.4e-151 539.7 458 63.1
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 2.4e-151 539.7 453 62.9
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 4.0e-151 538.9 451 65.4
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 5.2e-151 538.5 507 62.3
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 8.9e-151 537.7 454 65.2
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 1.2e-150 537.3 452 66.6
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 2.6e-150 536.2 452 66.2
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 7.6e-150 534.6 455 64.0
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 1.3e-149 533.9 458 61.1
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 1.7e-149 533.5 449 64.4
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 3.8e-149 532.3 447 65.5
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 6.4e-149 531.6 456 63.8
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 1.4e-148 530.4 472 64.2
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 4.2e-148 528.9 454 63.4
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 4.2e-148 528.9 453 63.4
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 1.6e-147 526.9 453 63.4
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 2.7e-147 526.2 452 64.8
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 4.6e-147 525.4 459 62.7
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 7.8e-147 524.6 451 63.9
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 1.3e-146 523.9 460 63.3
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 1.3e-146 523.9 460 63.3
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 2.3e-146 523.1 456 63.6
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 1.1e-145 520.8 449 63.9
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 3.3e-145 519.2 451 63.4
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 3.6e-144 515.8 455 62.0
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 4.8e-144 515.4 462 61.3
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 6.2e-144 515.0 449 60.8
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 1.8e-143 513.5 452 64.4
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 2.4e-143 513.1 489 61.1
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 4.0e-143 512.3 449 60.8
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 5.3e-143 511.9 460 60.7
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 5.3e-143 511.9 450 63.6
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 6.9e-143 511.5 449 61.5
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 6.9e-143 511.5 457 60.6
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 6.9e-143 511.5 452 62.6
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 9.0e-143 511.1 458 60.3
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 2.6e-142 509.6 452 62.8
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 3.4e-142 509.2 457 60.2
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.2e-141 506.5 456 61.6
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 2.9e-141 506.1 463 62.0
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 2.9e-141 506.1 463 62.0
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.9e-141 506.1 467 61.7
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 3.8e-141 505.8 459 59.0
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 4.9e-141 505.4 462 61.7
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 1.1e-140 504.2 466 59.7
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 9.3e-140 501.1 450 61.3
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 7.3e-137 491.5 452 60.0
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 2.1e-136 490.0 449 60.4
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 9.0e-135 484.6 433 61.4
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 1.3e-133 480.7 446 61.0
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 1.3e-133 480.7 446 61.0
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 1.2e-131 474.2 465 56.6
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 8.7e-130 468.0 452 60.0
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 1.8e-127 460.3 449 57.0
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 8.4e-125 451.4 449 55.7
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 1.1e-119 434.5 463 54.6
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 3.1e-119 433.0 424 59.0
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 7.6e-118 428.3 480 53.1
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 1.9e-116 423.7 433 56.8
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 4.3e-113 412.5 450 50.4
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 5.7e-113 412.1 447 49.2
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.4e-108 397.5 447 53.5
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 2.5e-105 386.7 459 49.5
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 5.7e-105 385.6 452 51.3
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 4.2e-100 369.4 432 50.7
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 9.7e-97 358.2 468 45.5
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 1.0e-93 348.2 493 42.8
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 4.0e-90 336.3 341 58.9
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 5.2e-90 335.9 414 49.8
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 3.8e-85 319.7 465 43.4
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 1.0e-77 295.0 320 56.2
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 1.3e-77 294.7 454 41.0
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 2.5e-76 290.4 265 58.5
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 7.0e-71 272.3 319 53.0
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 8.3e-48 195.7 494 32.6
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 2.8e-43 180.6 472 31.8
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 1.8e-42 177.9 457 30.6
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.5e-41 174.9 473 30.0
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 9.2e-39 165.6 492 31.3
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 1.7e-37 161.4 482 31.5
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 6.4e-32 142.9 261 42.5
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 7.8e-30 136.0 130 61.5
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 4.8e-27 126.7 143 49.7
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 4.0e-26 123.6 497 24.1
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 5.8e-17 93.2 61 75.4
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 1.0e-13 82.4 71 54.9
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 1.1e-12 79.0 70 54.3
SGA_v2.0_scaffold32G12947 Striga asiatica HOM05D004672 ORTHO05D005732 4.0e-10 70.5 102 42.2
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 6.9e-10 69.7 421 23.8
Ah.01g011940 Amaranthus hybridus HOM05D004672 ORTHO05D005732 1.0e-08 65.9 40 75.0
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 5.5e-07 60.1 100 35.0


User provided reference genes

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