Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 0.0e+00 1112.8 566 100.0
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 2.5e-293 1011.5 566 89.4
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 3.1e-283 978.0 566 86.7
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 8.9e-283 976.5 566 86.6
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 7.0e-280 966.8 566 84.6
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 6.0e-279 963.8 566 85.0
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 6.0e-279 963.8 566 85.0
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.5e-277 958.4 566 85.0
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.2e-276 956.1 566 84.8
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 1.9e-272 942.2 562 82.9
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 6.6e-270 933.7 562 83.5
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 6.6e-270 933.7 566 82.0
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 5.6e-269 930.6 551 84.0
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 6.2e-268 927.2 567 81.3
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 1.4e-267 926.0 561 81.6
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 1.4e-267 926.0 556 82.7
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 3.1e-267 924.9 561 79.9
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 3.4e-266 921.4 565 80.5
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 4.4e-266 921.0 562 80.8
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 8.3e-265 916.8 604 78.0
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 4.6e-263 911.0 568 79.8
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 1.0e-262 909.8 569 80.0
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 2.3e-262 908.7 567 80.1
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 3.0e-262 908.3 549 81.4
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 6.6e-262 907.1 630 74.3
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 8.6e-262 906.7 553 81.4
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 8.6e-262 906.7 569 79.8
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 1.1e-261 906.4 563 79.6
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.5e-261 906.0 567 79.9
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 1.5e-261 906.0 553 81.4
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 1.5e-261 906.0 565 79.5
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 9.6e-261 903.3 556 79.9
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 1.2e-260 902.9 556 81.5
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 1.2e-260 902.9 564 79.1
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 8.1e-260 900.2 567 78.8
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 1.8e-259 899.0 569 78.4
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.8e-259 899.0 567 78.7
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.4e-259 898.7 567 78.8
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 2.4e-259 898.7 556 78.8
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 7.6e-258 893.6 566 78.8
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 1.7e-257 892.5 564 77.8
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 1.7e-257 892.5 585 76.6
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 3.8e-257 891.3 556 79.7
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 1.9e-256 889.0 562 77.8
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 4.2e-256 887.9 562 77.6
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 7.1e-256 887.1 562 77.6
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 4.6e-255 884.4 566 77.9
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 2.3e-254 882.1 589 75.7
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 3.0e-254 881.7 581 76.4
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 1.6e-252 875.9 549 77.8
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 8.1e-252 873.6 587 74.4
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 1.1e-251 873.2 569 77.7
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 1.1e-251 873.2 549 77.0
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 1.1e-251 873.2 566 76.5
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 3.1e-251 871.7 549 77.8
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 3.1e-251 871.7 572 77.6
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 4.0e-251 871.3 558 79.0
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 9.0e-251 870.2 568 76.6
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 1.2e-250 869.8 544 80.3
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 1.5e-250 869.4 563 76.2
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 2.0e-250 869.0 549 77.6
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 2.6e-250 868.6 562 76.3
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 1.7e-249 865.9 561 76.1
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 1.2e-247 859.8 562 76.5
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 1.6e-247 859.4 555 77.1
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 2.1e-247 859.0 568 77.3
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 3.5e-247 858.2 567 75.7
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 3.5e-247 858.2 555 76.9
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 3.5e-247 858.2 560 76.2
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 3.5e-247 858.2 568 77.1
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 4.6e-247 857.8 556 77.7
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 4.6e-247 857.8 554 76.7
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 6.0e-247 857.4 552 77.0
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 1.0e-246 856.7 552 76.6
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 1.3e-246 856.3 562 76.2
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 1.3e-246 856.3 562 75.8
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.3e-246 856.3 568 77.1
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 3.0e-246 855.1 560 76.6
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 6.6e-246 854.0 542 77.3
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 8.7e-246 853.6 553 78.8
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 1.1e-245 853.2 562 75.8
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 4.3e-245 851.3 552 76.4
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 9.6e-245 850.1 555 77.5
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.3e-244 849.7 553 78.5
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 6.2e-244 847.4 560 75.2
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 2.4e-243 845.5 552 75.7
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 1.2e-242 843.2 552 75.5
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 2.0e-242 842.4 562 74.7
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 2.0e-242 842.4 560 75.0
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 4.5e-242 841.3 621 71.5
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 1.4e-240 836.3 596 71.3
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 1.4e-240 836.3 550 76.2
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.2e-239 833.2 556 76.6
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 1.6e-239 832.8 563 73.7
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 1.6e-239 832.8 563 74.2
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 2.7e-239 832.0 560 73.0
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 4.6e-239 831.2 544 75.6
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 4.8e-236 821.2 552 74.1
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 6.2e-236 820.8 557 75.8
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 1.4e-235 819.7 568 73.1
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 1.4e-235 819.7 550 74.4
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 1.4e-235 819.7 550 74.4
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 3.1e-235 818.5 555 73.7
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 3.1e-235 818.5 611 70.5
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 9.0e-235 817.0 550 74.0
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 2.0e-234 815.8 571 72.5
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 4.5e-234 814.7 538 75.8
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 6.5e-233 810.8 549 73.4
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 1.9e-232 809.3 518 75.9
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 1.3e-230 803.1 567 71.1
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 6.7e-230 800.8 631 65.8
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 2.5e-229 798.9 570 70.5
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 5.8e-226 787.7 556 72.3
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 8.4e-225 783.9 560 68.0
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 1.5e-221 773.1 454 84.6
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 1.4e-216 756.5 481 77.1
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 5.5e-216 754.6 555 66.5
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 4.8e-212 741.5 579 65.8
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 6.9e-211 737.6 562 68.0
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.2e-210 736.9 479 76.6
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 2.3e-206 722.6 479 76.0
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 2.6e-197 692.6 506 65.2
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 3.7e-196 688.7 549 62.1
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 3.0e-190 669.1 559 60.1
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 2.5e-184 649.4 559 59.6
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 5.7e-181 638.3 418 75.6
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 4.7e-175 618.6 364 83.5
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 1.1e-168 597.4 402 73.1
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 1.9e-168 596.7 402 72.4
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 2.1e-167 593.2 402 72.1
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 4.7e-167 592.0 359 83.3
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 1.9e-147 526.9 563 49.0
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 5.1e-137 492.3 334 74.0
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 2.6e-133 479.9 533 46.2
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 1.2e-125 454.5 272 81.2
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 1.1e-120 438.0 339 68.7
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.8e-103 380.2 220 82.3
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 3.1e-86 323.6 195 77.4
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.6e-80 303.9 200 80.0
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 2.4e-70 270.8 206 66.0
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 2.7e-53 214.2 152 68.4
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 7.3e-51 206.1 141 70.9
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 3.6e-50 203.8 147 70.7
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 3.2e-46 190.7 189 56.6
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 9.2e-46 189.1 117 77.8
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 8.4e-31 139.4 85 87.1
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 2.1e-29 134.8 92 71.7
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 1.2e-24 119.0 90 66.7
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 7.6e-24 116.3 86 62.8
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 1.9e-22 111.7 109 54.1
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 2.1e-21 108.2 83 65.1
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.1e-21 108.2 71 69.0
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 1.5e-08 65.5 55 54.5
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 2.0e-08 65.1 304 24.3
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 9.9e-08 62.8 112 34.8
VMungo0464G0759 Vigna mungo HOM05D004765 ORTHO05D005900 1.9e-06 58.5 34 76.5


User provided reference genes

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