Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08933 Davidia involucrata HOM05D000141 ORTHO05D029241 4.1e-55 218.0 127 100.0
Dinv29953 Davidia involucrata HOM05D060172 ORTHO05D029241 1.1e-23 113.6 65 87.7
Dinv23940 Davidia involucrata HOM05D000141 ORTHO05D001311 1.2e-22 110.2 91 78.0
CSS0028213 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001311 3.5e-22 108.6 91 75.8
CSS0026300 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001311 6.0e-22 107.8 100 71.0
Actinidia23633 Actinidia chinensis HOM05D000141 ORTHO05D001311 1.0e-21 107.1 91 78.0
Cc11_g03540 Coffea canephora HOM05D000141 ORTHO05D001311 1.0e-21 107.1 100 69.0
Dinv40286 Davidia involucrata HOM05D000141 ORTHO05D001311 1.3e-21 106.7 101 71.3
Actinidia24644 Actinidia chinensis HOM05D000141 ORTHO05D001311 1.1e-20 103.6 100 67.0
vmacro22527 Vaccinium macrocarpon HOM05D000141 ORTHO05D001311 1.1e-20 103.6 100 59.0
Lj5A534T53 Lonicera japonica HOM05D000141 ORTHO05D001311 1.9e-20 102.8 126 50.0
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 2.5e-20 102.4 100 66.0
Hma1.2p1_1983F.1_g310010 Hydrangea macrophylla HOM05D000141 ORTHO05D001311 3.3e-20 102.1 99 64.6
EL10Ac4g09349 Beta vulgaris HOM05D000141 ORTHO05D001311 4.3e-20 101.7 100 63.0
Lj9C33G9 Lonicera japonica HOM05D000141 ORTHO05D001311 4.3e-20 101.7 91 59.3
Lsat_1_v5_gn_9_85960 Lactuca sativa HOM05D000141 ORTHO05D001311 1.6e-19 99.8 91 61.5
Ah.04g160230 Amaranthus hybridus HOM05D000141 ORTHO05D001311 2.2e-19 99.4 100 62.0
Nitab4.5_0004395g0050 Nicotiana tabacum HOM05D000141 ORTHO05D002968 2.8e-19 99.0 91 72.5
Sc06g0003320 Simmondsia chinensis HOM05D000141 ORTHO05D001311 2.8e-19 99.0 99 68.7
Sc06g0003530 Simmondsia chinensis HOM05D000141 ORTHO05D001311 2.8e-19 99.0 99 68.7
vmacro05018 Vaccinium macrocarpon HOM05D000141 ORTHO05D001311 6.3e-19 97.8 100 57.0
HanXRQChr09g0277481 Helianthus annuus HOM05D000141 ORTHO05D001311 1.4e-18 96.7 91 64.8
Nitab4.5_0004395g0010 Nicotiana tabacum HOM05D000141 ORTHO05D001311 1.8e-18 96.3 90 72.2
ECA236G0945 Erigeron canadensis HOM05D000141 ORTHO05D001311 2.4e-18 95.9 100 53.0
Nitab4.5_0000137g0350 Nicotiana tabacum HOM05D000141 ORTHO05D002968 3.1e-18 95.5 91 69.2
AUR62000829 Chenopodium quinoa HOM05D000141 ORTHO05D001311 7.6e-17 90.9 100 65.0
HanXRQChr15g0469981 Helianthus annuus HOM05D000141 ORTHO05D001311 1.0e-16 90.5 93 50.5
TWI12G1241 Tripterygium wilfordii HOM05D000141 ORTHO05D001311 1.0e-16 90.5 100 54.0
Oeu017486.1 Olea europaea HOM05D000141 ORTHO05D001311 1.3e-16 90.1 99 68.7
AUR62005145 Chenopodium quinoa HOM05D000141 ORTHO05D001311 1.7e-16 89.7 100 63.0
DCAR_001937 Daucus carota HOM05D000141 ORTHO05D001311 1.7e-16 89.7 99 55.6
Glyma.10G154200 Glycine max HOM05D000141 ORTHO05D001311 2.2e-16 89.4 100 53.0
Thecc.05G303600 Theobroma cacao HOM05D000141 ORTHO05D001311 2.2e-16 89.4 100 52.0
Glyma.19G235400 Glycine max HOM05D000141 ORTHO05D001311 2.9e-16 89.0 102 52.0
MSTRG.28000 Avicennia marina HOM05D000141 ORTHO05D001311 3.8e-16 88.6 100 70.0
Migut.N02004 Erythranthe guttata HOM05D000141 ORTHO05D001311 3.8e-16 88.6 100 69.0
QL03p006990 Quercus lobata HOM05D000141 ORTHO05D001311 6.5e-16 87.8 100 55.0
Aqoxy5G00504 Aquilegia oxysepala HOM05D000141 ORTHO05D001311 8.5e-16 87.4 99 53.5
SGA_v2.0_scaffold81G26071 Striga asiatica HOM05D000141 ORTHO05D001311 8.5e-16 87.4 100 63.0
TAR636G0732 Trochodendron aralioides HOM05D000141 ORTHO05D001311 8.5e-16 87.4 100 53.0
Glyma.20G234100 Glycine max HOM05D000141 ORTHO05D001311 1.4e-15 86.7 91 52.7
RhsimUnG0225700 Rhododendron simsii HOM05D000141 ORTHO05D001311 1.4e-15 86.7 91 51.6
Cpa.g.sc48.52 Carica papaya HOM05D000141 ORTHO05D001311 1.9e-15 86.3 91 52.7
Dinv02958 Davidia involucrata HOM05D060172 ORTHO05D029241 1.9e-15 86.3 45 88.9
ATR0626G064 Amborella trichopoda HOM05D000141 ORTHO05D001311 3.2e-15 85.5 102 48.0
CANSAT54G1239 Cannabis sativa HOM05D000141 ORTHO05D001311 3.2e-15 85.5 115 50.4
Prupe.6G326000 Prunus persica HOM05D000141 ORTHO05D001311 3.2e-15 85.5 100 52.0
PSO832G0670 Papaver somniferum HOM05D000141 ORTHO05D001311 5.5e-15 84.7 114 48.2
CiPaw.07G017700 Carya illinoinensis HOM05D000141 ORTHO05D001311 9.4e-15 84.0 93 52.7
Manes.08G120600 Manihot esculenta HOM05D000141 ORTHO05D001311 1.2e-14 83.6 100 50.0
Ca_09355_v3 Cicer arietinum L. HOM05D000141 ORTHO05D001311 1.6e-14 83.2 98 54.1
Haze_04197 Corylus avellana HOM05D000141 ORTHO05D001311 1.6e-14 83.2 116 47.4
FvH4_6g05830 Fragaria vesca HOM05D000141 ORTHO05D001311 1.6e-14 83.2 112 47.3
FAN05G0885 Fragaria x ananassa HOM05D000141 ORTHO05D001311 1.6e-14 83.2 112 47.3
FAN05G2746 Fragaria x ananassa HOM05D000141 ORTHO05D001311 1.6e-14 83.2 112 47.3
FAN14G0633 Fragaria x ananassa HOM05D000141 ORTHO05D001311 1.6e-14 83.2 112 47.3
TWI56G0333 Tripterygium wilfordii HOM05D000141 ORTHO05D001311 1.6e-14 83.2 90 51.1
VMungo0720G0952 Vigna mungo HOM05D000141 ORTHO05D001311 1.6e-14 83.2 99 48.5
FAN02G1530 Fragaria x ananassa HOM05D000141 ORTHO05D001311 2.1e-14 82.8 112 46.4
FAN14G3746 Fragaria x ananassa HOM05D000141 ORTHO05D001311 2.1e-14 82.8 112 46.4
PSO210G1824 Papaver somniferum HOM05D000141 ORTHO05D001311 2.1e-14 82.8 114 47.4
Phvul.007G179900 Phaseolus vulgaris HOM05D000141 ORTHO05D001311 2.1e-14 82.8 91 51.6
TPR.G33202 Trifolium pratense HOM05D000141 ORTHO05D001311 2.1e-14 82.8 102 51.0
Aqoxy2G03340 Aquilegia oxysepala HOM05D000141 ORTHO05D001311 2.7e-14 82.4 92 52.2
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 2.7e-14 82.4 91 50.5
Manes.09G167000 Manihot esculenta HOM05D000141 ORTHO05D001311 2.7e-14 82.4 100 50.0
Peaxi162Scf00037g00328 Petunia axillaris HOM05D000141 ORTHO05D002968 3.6e-14 82.0 91 49.5
MD12G1219400 Malus domestica HOM05D000141 ORTHO05D001311 4.6e-14 81.6 129 41.9
FAN09G4402 Fragaria x ananassa HOM05D000141 ORTHO05D001311 6.1e-14 81.3 112 46.4
Lj1g0022354 Lotus japonicus HOM05D000141 ORTHO05D001311 6.1e-14 81.3 93 50.5
Medtr7g113520 Medicago truncatula HOM05D000141 ORTHO05D001311 6.1e-14 81.3 101 46.5
CiPaw.08G164800 Carya illinoinensis HOM05D000141 ORTHO05D001311 1.0e-13 80.5 114 46.5
Duzib177G1109 Durio zibethinus HOM05D000141 ORTHO05D001311 1.0e-13 80.5 91 51.6
Glyma.03G237800 Glycine max HOM05D000141 ORTHO05D001311 1.4e-13 80.1 102 48.0
MD04G1205300 Malus domestica HOM05D000141 ORTHO05D001311 1.4e-13 80.1 100 51.0
Gohir.D11G275100 Gossypium hirsutum HOM05D000141 ORTHO05D001311 1.8e-13 79.7 114 43.9
Gorai.007G296900 Gossypium raimondii HOM05D000141 ORTHO05D001311 1.8e-13 79.7 91 50.5
Nn4g26256 Nelumbo nucifera HOM05D000141 ORTHO05D001311 1.8e-13 79.7 91 49.5
Sed0018880 Sechium edule HOM05D000141 ORTHO05D001311 1.8e-13 79.7 115 42.6
Ca_10112_v3 Cicer arietinum L. HOM05D000141 ORTHO05D001311 2.3e-13 79.3 98 46.9
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 2.3e-13 79.3 91 48.4
MBI17_g45014_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001311 3.0e-13 79.0 100 49.0
Gohir.A11G264900 Gossypium hirsutum HOM05D000141 ORTHO05D001311 3.9e-13 78.6 91 49.5
MBI17_g09112_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001311 3.9e-13 78.6 100 49.0
Psat0s3632g0040 Pisum sativum HOM05D000141 ORTHO05D001311 3.9e-13 78.6 134 44.8
THA.LOC104818697 Tarenaya hassleriana HOM05D000141 ORTHO05D001311 3.9e-13 78.6 126 43.7
Lj5g0028077 Lotus japonicus HOM05D000141 ORTHO05D001311 5.1e-13 78.2 132 46.2
Sed0011027 Sechium edule HOM05D000141 ORTHO05D001311 6.7e-13 77.8 124 41.9
Atru.chr2.407 Acer truncatum HOM05D000141 ORTHO05D001311 8.8e-13 77.4 97 45.4
Medtr1g082920 Medicago truncatula HOM05D000141 ORTHO05D001311 8.8e-13 77.4 101 49.5
RcHm_v2.0_Chr3g0454741 Rosa chinensis HOM05D000141 ORTHO05D001311 8.8e-13 77.4 129 44.2
PGR083G2277 Punica granatum HOM05D000141 ORTHO05D001311 1.5e-12 76.6 99 46.5
Gohir.D11G311300 Gossypium hirsutum HOM05D000141 ORTHO05D001311 2.5e-12 75.9 91 47.3
Gorai.007G342500 Gossypium raimondii HOM05D000141 ORTHO05D001311 2.5e-12 75.9 91 47.3
Sabra13G0023100 Salix brachista HOM05D000141 ORTHO05D001311 3.3e-12 75.5 100 49.0
MELO3C004267.2 Cucumis melo HOM05D000141 ORTHO05D001311 4.3e-12 75.1 99 46.5
CsaV3_2G005260 Cucumis sativus L. HOM05D000141 ORTHO05D001311 5.7e-12 74.7 99 46.5
Gohir.A11G295600 Gossypium hirsutum HOM05D000141 ORTHO05D001311 5.7e-12 74.7 91 46.2
Lalb_Chr21g0310691 Lupinus albus HOM05D000141 ORTHO05D001311 5.7e-12 74.7 110 45.5
PGSC0003DMG400018991 Solanum tuberosum HOM05D000141 ORTHO05D001311 5.7e-12 74.7 120 50.8
TWI56G0410 Tripterygium wilfordii HOM05D000141 ORTHO05D001311 9.7e-12 73.9 103 47.6
Solyc01g098980.4 Solanum lycopersicum HOM05D000141 ORTHO05D002968 1.7e-11 73.2 119 48.7
arahy.Tifrunner.gnm1.ann1.85G940 Arachis hypogaea HOM05D000141 ORTHO05D001311 2.2e-11 72.8 99 42.4
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 2.2e-11 72.8 99 44.4
Potri.005G031500 Populus trichocarpa HOM05D000141 ORTHO05D001311 2.2e-11 72.8 100 49.0
unitig_0.g2369 Utricularia gibba HOM05D000141 ORTHO05D001311 2.2e-11 72.8 104 42.3
Actinidia19787 Actinidia chinensis HOM05D000141 ORTHO05D001311 2.8e-11 72.4 79 72.2
Thhalv10005446m.g Eutrema salsugineum HOM05D000141 ORTHO05D001311 2.8e-11 72.4 132 42.4
Psat0s3135g0280 Pisum sativum HOM05D000141 ORTHO05D001311 2.8e-11 72.4 98 43.9
Potri.005G030271 Populus trichocarpa HOM05D000141 ORTHO05D001311 2.8e-11 72.4 111 46.8
BraA09t36172Z Brassica rapa HOM05D000141 ORTHO05D001311 3.7e-11 72.0 99 47.5
Duzib128G1374 Durio zibethinus HOM05D000141 ORTHO05D001311 3.7e-11 72.0 90 46.7
Sopen01g042550 Solanum pennellii HOM05D000141 ORTHO05D001311 3.7e-11 72.0 119 47.9
BraA02t08843Z Brassica rapa HOM05D000141 ORTHO05D001311 4.8e-11 71.6 89 49.4
Potri.013G020700 Populus trichocarpa HOM05D000141 ORTHO05D001311 4.8e-11 71.6 100 47.0
Sp2g20730 Schrenkiella parvula HOM05D000141 ORTHO05D001311 4.8e-11 71.6 122 42.6
A09p05340 Brassica napus HOM05D000141 ORTHO05D001311 6.3e-11 71.2 124 43.5
CARHR186110 Cardamine hirsuta HOM05D000141 ORTHO05D001311 6.3e-11 71.2 123 41.5
BcaC03g17792 Brassica carinata HOM05D000141 ORTHO05D001311 1.8e-10 69.7 124 43.5
C02p58170 Brassica napus HOM05D000141 ORTHO05D001311 1.8e-10 69.7 124 43.5
BolC2t11885H Brassica oleracea HOM05D000141 ORTHO05D001311 1.8e-10 69.7 124 43.5
CAN.G1034.10 Capsicum annuum HOM05D000141 ORTHO05D001311 1.8e-10 69.7 118 48.3
arahy.Tifrunner.gnm1.ann1.VUE9H8 Arachis hypogaea HOM05D000141 ORTHO05D001311 2.4e-10 69.3 99 41.4
A02p38670 Brassica napus HOM05D000141 ORTHO05D001311 2.4e-10 69.3 121 40.5
unitig_26.g9982 Utricularia gibba HOM05D000141 ORTHO05D001311 3.1e-10 68.9 92 47.8
Lalb_Chr02g0148241 Lupinus albus HOM05D000141 ORTHO05D001311 4.1e-10 68.6 100 47.0
AL6G39460 Arabidopsis lyrata HOM05D000141 ORTHO05D001311 5.3e-10 68.2 98 45.9
CDE05G2015 Ceratophyllum demersum HOM05D000141 ORTHO05D001311 6.9e-10 67.8 101 41.6
Aa31LG11G9270 Aethionema arabicum HOM05D000141 ORTHO05D001311 9.1e-10 67.4 89 44.9
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 9.1e-10 67.4 95 43.2
AT5G27550 Arabidopsis thaliana HOM05D000141 ORTHO05D001311 1.2e-09 67.0 98 44.9
Carub.0006s2501 Capsella rubella HOM05D000141 ORTHO05D001311 3.4e-09 65.5 122 38.5
Sabra05G0034100 Salix brachista HOM05D000141 ORTHO05D001311 7.7e-09 64.3 100 43.0
HanXRQChr16g0500851 Helianthus annuus HOM05D000141 ORTHO05D029241 1.4e-07 60.1 71 46.5
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 7.2e-07 57.8 27 92.6
CBR_g34620 Chara braunii HOM05D000141 ORTHO05D001311 9.4e-07 57.4 60 48.3
Mapoly0098s0032 Marchantia polymorpha HOM05D000141 ORTHO05D001311 3.6e-06 55.5 59 47.5
Zm00001eb287500 Zea mays HOM05D000141 ORTHO05D001311 3.6e-06 55.5 54 50.0
Aa31LG5G15640 Aethionema arabicum HOM05D000141 ORTHO05D001311 4.7e-06 55.1 27 88.9
C09p05820 Brassica napus HOM05D000141 ORTHO05D001311 7.9e-06 54.3 27 85.2
BolC9t53509H Brassica oleracea HOM05D000141 ORTHO05D001311 7.9e-06 54.3 27 85.2
ClCG07G010630 Citrullus lanatus HOM05D000141 ORTHO05D001311 7.9e-06 54.3 30 73.3


User provided reference genes

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