Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 5.3e-179 630.9 325 100.0
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 9.4e-128 460.7 329 76.3
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 1.2e-127 460.3 329 76.6
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 1.1e-123 447.2 323 73.7
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 9.4e-120 434.1 320 72.8
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 1.9e-112 409.8 320 69.1
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 2.1e-111 406.4 298 69.8
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 2.7e-111 406.0 319 70.8
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 5.2e-110 401.7 324 66.7
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 4.4e-109 398.7 324 65.4
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 7.5e-109 397.9 324 65.7
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 9.8e-109 397.5 324 65.1
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 9.2e-107 391.0 264 72.3
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 3.5e-106 389.0 323 63.5
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 4.5e-106 388.7 320 63.1
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 5.9e-106 388.3 304 65.5
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 1.0e-105 387.5 324 64.2
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 1.7e-105 386.7 287 69.0
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 2.9e-105 386.0 297 66.7
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 3.8e-105 385.6 299 68.6
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 6.6e-105 384.8 294 68.0
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 8.6e-105 384.4 265 70.9
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 1.9e-104 383.3 299 65.9
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 5.6e-104 381.7 279 70.6
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 2.1e-103 379.8 304 67.4
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 1.0e-102 377.5 304 67.4
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 2.0e-101 373.2 291 63.9
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 2.0e-101 373.2 276 69.6
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 3.4e-101 372.5 281 66.9
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 3.4e-101 372.5 290 67.9
Peaxi162Scf00224g00218 Petunia axillaris HOM05D005386 ORTHO05D006981 7.5e-101 371.3 287 66.9
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 8.3e-100 367.9 298 66.1
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 1.6e-98 363.6 280 66.8
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 3.5e-98 362.5 291 63.9
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 5.9e-98 361.7 279 67.0
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 5.9e-98 361.7 370 56.5
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 1.7e-97 360.1 278 67.3
MSTRG.18771 Avicennia marina HOM05D005386 ORTHO05D006981 6.6e-97 358.2 308 60.4
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 1.2e-95 354.0 302 63.6
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 4.7e-95 352.1 270 67.4
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 6.2e-95 351.7 298 63.4
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 1.8e-94 350.1 292 64.7
Actinidia37072 Actinidia chinensis HOM05D005386 ORTHO05D006981 5.2e-94 348.6 313 63.6
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 6.8e-94 348.2 268 66.0
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 1.2e-93 347.4 323 60.1
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 3.4e-93 345.9 328 59.1
PSO339G6531 Papaver somniferum HOM05D005386 ORTHO05D006981 5.8e-93 345.1 286 60.8
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 9.8e-93 344.4 264 67.4
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 2.9e-92 342.8 273 63.4
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 3.7e-92 342.4 287 63.1
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 6.4e-92 341.7 262 65.3
Migut.D02364 Erythranthe guttata HOM05D005386 ORTHO05D006981 3.2e-91 339.3 292 60.6
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 5.4e-91 338.6 306 58.2
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 9.2e-91 337.8 303 58.7
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 1.2e-90 337.4 302 59.3
MBI19_g34002_MAGBIO Magnolia biondii HOM05D005386 ORTHO05D006981 2.7e-90 336.3 313 59.7
PSO384G1357 Papaver somniferum HOM05D005386 ORTHO05D006981 2.7e-90 336.3 295 58.6
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 4.6e-90 335.5 308 60.1
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 4.6e-90 335.5 261 67.0
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 1.0e-89 334.3 307 58.6
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 5.0e-89 332.0 292 59.9
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 7.3e-88 328.2 300 58.3
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 9.5e-88 327.8 285 61.1
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 9.5e-88 327.8 274 62.8
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 4.7e-87 325.5 272 63.6
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 6.2e-87 325.1 274 62.0
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 8.1e-87 324.7 265 64.9
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 1.1e-86 324.3 312 55.4
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 4.0e-86 322.4 311 58.8
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 5.2e-86 322.0 274 61.3
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 5.2e-86 322.0 262 61.8
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 2.6e-85 319.7 319 54.5
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 2.1e-82 310.1 264 61.7
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 1.3e-81 307.4 276 58.7
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 5.6e-80 302.0 301 55.5
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 5.8e-77 292.0 276 56.9
Aqoxy1G00008 Aquilegia oxysepala HOM05D005386 ORTHO05D006981 7.6e-77 291.6 279 54.5
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 2.9e-76 289.7 382 45.5
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 1.9e-75 287.0 285 56.5
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 9.2e-75 284.6 328 51.8
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 1.2e-74 284.3 243 62.1
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 3.9e-73 279.3 296 48.6
Zm00001eb395560 Zea mays HOM05D005386 ORTHO05D006981 3.6e-71 272.7 266 51.9
unitig_736.g22394 Utricularia gibba HOM05D005386 ORTHO05D006981 1.1e-70 271.2 276 54.7
CDE08G0019 Ceratophyllum demersum HOM05D005386 ORTHO05D006981 1.8e-70 270.4 290 51.0
Os03g0322600 Oryza sativa ssp. japonica HOM05D005386 ORTHO05D006981 8.9e-70 268.1 294 48.6
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 8.9e-70 268.1 314 48.7
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 2.0e-69 266.9 291 51.2
Oeu014472.1 Olea europaea HOM05D005386 ORTHO05D006981 6.0e-66 255.4 161 81.4
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 5.1e-65 252.3 293 50.2
Hma1.2p1_0319F.1_g123910 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 1.5e-64 250.8 150 86.0
Zm00001eb015340 Zea mays HOM05D005386 ORTHO05D006981 9.6e-64 248.1 202 60.4
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 6.9e-62 241.9 269 50.2
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 6.9e-62 241.9 267 50.6
Zm00001eb285540 Zea mays HOM05D005386 ORTHO05D006981 8.4e-60 235.0 284 46.8
Cpa.g.sc195.24 Carica papaya HOM05D005386 ORTHO05D006981 7.1e-59 231.9 152 78.9
Phvul.011G096200 Phaseolus vulgaris HOM05D005386 ORTHO05D006981 1.5e-56 224.2 214 57.9
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 7.4e-56 221.9 282 43.6
BcaC01g06590 Brassica carinata HOM05D005386 ORTHO05D006981 6.9e-54 215.3 207 56.5
Aa31LG1G13200 Aethionema arabicum HOM05D005386 ORTHO05D006981 1.2e-50 204.5 239 52.3
AagrBONN_evm.TU.Sc2ySwM_228.4159 Anthoceros agrestis HOM05D005386 ORTHO05D006981 2.7e-50 203.4 282 40.1
FAN15G3687 Fragaria x ananassa HOM05D005386 ORTHO05D006981 2.7e-50 203.4 131 77.1
TAR633G2192 Trochodendron aralioides HOM05D005386 ORTHO05D006981 2.7e-50 203.4 167 63.5
SalBow6G0611 Salvia bowleyana HOM05D005386 ORTHO05D006981 6.7e-49 198.7 249 48.2
AUR62014970 Chenopodium quinoa HOM05D005386 ORTHO05D006981 7.4e-48 195.3 271 44.6
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 3.5e-42 176.4 215 47.4
SMO140G0002 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 1.3e-41 174.5 280 41.4
VMungo1127G0965 Vigna mungo HOM05D005386 ORTHO05D006981 9.6e-40 168.3 145 60.7
Ciclev10029637m.g Citrus clementina HOM05D005386 ORTHO05D006981 2.2e-36 157.1 100 78.0
Thecc.09G278700 Theobroma cacao HOM05D005386 ORTHO05D006981 2.9e-36 156.8 201 46.8
Pp3c20_23100 Physcomitrium patens HOM05D005386 ORTHO05D006981 7.2e-35 152.1 182 45.1
Ciclev10029895m.g Citrus clementina HOM05D005386 ORTHO05D006981 1.1e-32 144.8 100 74.0
FvH4_2g10370 Fragaria vesca HOM05D005386 ORTHO05D006981 5.3e-30 136.0 131 56.5
AUR62043809 Chenopodium quinoa HOM05D004271 ORTHO05D006011 2.6e-29 133.7 139 56.1
FAN24G3375 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.1e-27 128.3 126 55.6
Aa31LG1G13190 Aethionema arabicum HOM05D005386 ORTHO05D006981 1.4e-27 127.9 87 69.0
arahy.Tifrunner.gnm1.ann1.M18R9V Arachis hypogaea HOM05D005386 ORTHO05D006981 1.6e-26 124.4 108 64.8
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 6.1e-26 122.5 82 74.4
CARHR191200 Cardamine hirsuta HOM05D005386 ORTHO05D006981 4.4e-24 116.3 146 45.2
Hma1.2p1_0319F.1_g123930 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 1.3e-23 114.8 115 56.5
arahy.Tifrunner.gnm1.ann1.XDN0DP Arachis hypogaea HOM05D005386 ORTHO05D006981 9.7e-16 88.6 72 65.3
arahy.Tifrunner.gnm1.ann1.J76LRM Arachis hypogaea HOM05D005386 ORTHO05D006981 1.1e-14 85.1 83 60.2
arahy.Tifrunner.gnm1.ann1.TQJ2IB Arachis hypogaea HOM05D005386 ORTHO05D006981 3.5e-13 80.1 82 58.5
Cpa.g.sc195.25 Carica papaya HOM05D005386 ORTHO05D006981 2.7e-10 70.5 77 49.4
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 5.2e-09 66.2 163 30.1
FvH4_2g10360 Fragaria vesca HOM05D005386 ORTHO05D006981 5.2e-09 66.2 46 67.4
CBR_g22416 Chara braunii HOM05D005386 ORTHO05D006981 1.2e-08 65.1 93 37.6
FvH4_2g10341 Fragaria vesca HOM05D005386 ORTHO05D006981 2.6e-08 63.9 58 51.7
arahy.Tifrunner.gnm1.ann1.CXSI0G Arachis hypogaea HOM05D000290 ORTHO05D002418 3.3e-08 63.5 54 61.1
MD09G1069600 Malus domestica HOM05D005386 ORTHO05D006981 5.7e-08 62.8 86 43.0
Cpa.g.sc195.26 Carica papaya HOM05D005386 ORTHO05D006981 7.5e-08 62.4 97 40.2
arahy.Tifrunner.gnm1.ann1.9EB2HI Arachis hypogaea HOM05D005386 ORTHO05D006981 1.7e-07 61.2 69 59.4
arahy.Tifrunner.gnm1.ann1.XD28JK Arachis hypogaea HOM05D005386 ORTHO05D006981 4.8e-07 59.7 59 62.7
arahy.Tifrunner.gnm1.ann1.V0D9HX Arachis hypogaea HOM05D005386 ORTHO05D084459 9.1e-06 55.5 60 51.7
MELO3C013567.2 Cucumis melo HOM05D006699 ORTHO05D008399 9.1e-06 55.5 164 29.9


User provided reference genes

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