Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08923 Davidia involucrata HOM05D007535 ORTHO05D008520 4.6e-202 708.0 446 100.0
CSS0035480 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 6.5e-79 298.9 375 53.3
vmacro03328 Vaccinium macrocarpon HOM05D007535 ORTHO05D008520 3.2e-78 296.6 486 56.0
Rhsim13G0113500 Rhododendron simsii HOM05D000001 ORTHO05D000003 1.3e-74 284.6 536 51.9
Actinidia07260 Actinidia chinensis HOM05D007535 ORTHO05D008520 2.7e-69 266.9 506 51.6
Hma1.2p1_2164F.1_g315740 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 2.4e-65 253.8 316 51.3
Lj2A969T70 Lonicera japonica HOM05D007535 ORTHO05D008520 4.0e-60 236.5 519 50.1
Hma1.2p1_2164F.1_g315730 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 3.7e-58 229.9 296 49.7
Hund18777 Selenicereus undatus HOM05D007535 ORTHO05D008520 3.0e-52 210.3 506 47.2
Thecc.09G278200 Theobroma cacao HOM05D007535 ORTHO05D008520 2.2e-50 204.1 503 43.1
Sc12g0004620 Simmondsia chinensis HOM05D007535 ORTHO05D008520 9.1e-49 198.7 488 47.7
Lalb_Chr24g0393491 Lupinus albus HOM05D007535 ORTHO05D008520 3.5e-48 196.8 331 42.6
Aqoxy4G02717 Aquilegia oxysepala HOM05D007535 ORTHO05D008520 4.5e-48 196.4 478 48.7
PSO339G0294 Papaver somniferum HOM05D007535 ORTHO05D008520 5.9e-48 196.1 450 45.8
Cpa.g.sc195.29 Carica papaya HOM05D007535 ORTHO05D008520 8.6e-47 192.2 360 41.4
Haze_23344 Corylus avellana HOM05D007535 ORTHO05D008520 1.2e-43 181.8 339 44.2
EL10Ac7g16124 Beta vulgaris HOM05D007535 ORTHO05D008520 5.4e-41 172.9 478 40.2
Sc12g0004670 Simmondsia chinensis HOM05D007535 ORTHO05D008520 2.0e-40 171.0 489 45.0
DCAR_024892 Daucus carota HOM05D007535 ORTHO05D008520 3.9e-39 166.8 473 46.7
Manes.04G001100 Manihot esculenta HOM05D007535 ORTHO05D008520 8.6e-39 165.6 506 43.7
PSO384G1635 Papaver somniferum HOM05D007535 ORTHO05D008520 3.3e-38 163.7 468 40.4
Lj3g0000707 Lotus japonicus HOM05D007535 ORTHO05D008520 5.6e-38 162.9 487 43.9
MELO3C025588.2 Cucumis melo HOM05D007535 ORTHO05D008520 1.2e-37 161.8 544 36.2
arahy.Tifrunner.gnm1.ann1.TGP3GH Arachis hypogaea HOM05D007535 ORTHO05D008520 1.6e-37 161.4 492 42.9
FAN16G1906 Fragaria x ananassa HOM05D007535 ORTHO05D008520 4.7e-37 159.8 361 39.9
Gorai.004G011300 Gossypium raimondii HOM05D007535 ORTHO05D008520 6.1e-37 159.5 489 41.7
Gohir.D08G017000 Gossypium hirsutum HOM05D007535 ORTHO05D008520 1.8e-36 157.9 483 41.2
Gohir.A08G006800 Gossypium hirsutum HOM05D007535 ORTHO05D008520 6.8e-36 156.0 480 41.0
TAR633G1755 Trochodendron aralioides HOM05D007535 ORTHO05D008520 2.0e-35 154.5 475 43.8
AUR62001527 Chenopodium quinoa HOM05D007535 ORTHO05D008520 3.4e-35 153.7 511 39.9
Prupe.6G137100 Prunus persica HOM05D007535 ORTHO05D008520 4.4e-35 153.3 508 41.1
Actinidia24231 Actinidia chinensis HOM05D007535 ORTHO05D008520 8.3e-34 149.1 174 55.2
GSVIVG01036079001 Vitis vinifera HOM05D007535 ORTHO05D008520 1.1e-33 148.7 472 42.2
Actinidia24230 Actinidia chinensis HOM05D007535 ORTHO05D008520 3.2e-33 147.1 160 56.2
Nitab4.5_0008177g0030 Nicotiana tabacum HOM05D007535 ORTHO05D008520 1.6e-32 144.8 468 39.3
Duzib150G0908 Durio zibethinus HOM05D007535 ORTHO05D008520 2.3e-31 141.0 240 44.6
Peaxi162Scf00224g00216 Petunia axillaris HOM05D007535 ORTHO05D008520 5.0e-31 139.8 495 39.0
Nn6g34805 Nelumbo nucifera HOM05D007535 ORTHO05D008520 1.9e-30 137.9 263 39.9
SGA_v2.0_scaffold177G39436 Striga asiatica HOM05D007535 ORTHO05D008520 1.9e-30 137.9 478 39.5
Nitab4.5_0000731g0020 Nicotiana tabacum HOM05D007535 ORTHO05D008520 3.3e-30 137.1 470 38.7
Psat5g257880 Pisum sativum HOM05D007535 ORTHO05D008520 7.3e-30 136.0 478 36.6
Cfa009985 Carpinus fangiana HOM05D007535 ORTHO05D008520 9.5e-30 135.6 480 43.3
ECA238G4833 Erigeron canadensis HOM05D007535 ORTHO05D008520 1.6e-29 134.8 471 38.9
Sopen11g027410 Solanum pennellii HOM05D007535 ORTHO05D008520 5.2e-28 129.8 521 35.9
Solyc11g068690.2 Solanum lycopersicum HOM05D007535 ORTHO05D008520 8.9e-28 129.0 521 36.1
PGSC0003DMG400026347 Solanum tuberosum HOM05D007535 ORTHO05D008520 1.5e-27 128.3 515 36.5
HPP92_011495 Vanilla planifolia HOM05D007535 ORTHO05D008520 2.0e-27 127.9 322 33.5
CAN.G745.17 Capsicum annuum HOM05D007535 ORTHO05D008520 4.4e-27 126.7 499 38.1
FAN21G0330 Fragaria x ananassa HOM05D007535 ORTHO05D008520 9.8e-27 125.6 483 37.9
MSTRG.12377 Avicennia marina HOM05D007535 ORTHO05D008520 3.2e-25 120.6 505 36.4
Cc00_g20950 Coffea canephora HOM05D007535 ORTHO05D008520 7.1e-25 119.4 466 39.5
Sabra04G0134300 Salix brachista HOM05D001716 ORTHO05D004234 1.2e-24 118.6 484 41.1
MD03G1150100 Malus domestica HOM05D007535 ORTHO05D008520 3.5e-24 117.1 502 38.4
Ciclev10029981m.g Citrus clementina HOM05D007535 ORTHO05D008520 2.3e-23 114.4 490 30.0
Ciclev10028368m.g Citrus clementina HOM05D007535 ORTHO05D008520 3.9e-23 113.6 483 41.6
RcHm_v2.0_Chr5g0046091 Rosa chinensis HOM05D007535 ORTHO05D008520 8.6e-23 112.5 484 36.6
ClCG01G011770 Citrullus lanatus HOM05D007535 ORTHO05D008520 3.3e-22 110.5 486 35.8
FAN25G3072 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.6e-21 108.2 480 37.9
FvH4_3g25730 Fragaria vesca HOM05D007535 ORTHO05D008520 2.1e-21 107.8 481 38.0
Glyma.12G186700 Glycine max HOM05D007535 ORTHO05D008520 1.4e-20 105.1 483 36.2
Phvul.005G122000 Phaseolus vulgaris HOM05D007535 ORTHO05D008520 1.4e-20 105.1 491 36.7
FAN11G3206 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.8e-20 104.8 478 37.9
Sed0017293 Sechium edule HOM05D007535 ORTHO05D008520 2.3e-20 104.4 475 37.3
TPR.G4567 Trifolium pratense HOM05D007535 ORTHO05D008520 1.2e-19 102.1 477 37.9
Medtr2g086950 Medicago truncatula HOM05D007535 ORTHO05D008520 1.5e-19 101.7 482 33.8
Glyma.13G314800 Glycine max HOM05D007535 ORTHO05D008520 3.4e-19 100.5 469 36.7
VMungo1080G1542 Vigna mungo HOM05D007535 ORTHO05D008520 7.6e-19 99.4 502 33.7
Atru.chr3.3166 Acer truncatum HOM05D007535 ORTHO05D008520 9.9e-19 99.0 224 38.4
unitig_27.g25117 Utricularia gibba HOM05D007535 ORTHO05D008520 1.3e-18 98.6 488 36.7
QL01p011831 Quercus lobata HOM05D007535 ORTHO05D008520 1.7e-18 98.2 564 36.3
AUR62020256 Chenopodium quinoa HOM05D007535 ORTHO05D008520 5.4e-17 93.2 75 62.7
Ca_01647_v3 Cicer arietinum L. HOM05D002184 ORTHO05D002379 3.5e-16 90.5 490 33.7
SalBow3G0383 Salvia bowleyana HOM05D007535 ORTHO05D008520 2.3e-15 87.8 498 33.7
TWI79G0866 Tripterygium wilfordii HOM05D007535 ORTHO05D008520 3.0e-15 87.4 486 35.8
Nitab4.5_0001640g0010 Nicotiana tabacum HOM05D007535 ORTHO05D008520 8.6e-15 85.9 341 28.4
MBI17_g01489_MAGBIO Magnolia biondii HOM05D007535 ORTHO05D008520 1.1e-14 85.5 259 29.3
Potri.004G199200 Populus trichocarpa HOM05D007535 ORTHO05D008520 1.1e-14 85.5 482 37.1
HanXRQChr14g0433121 Helianthus annuus HOM05D007535 ORTHO05D008520 2.5e-14 84.3 474 34.4
Eucgr.J00525 Eucalyptus grandis HOM05D007535 ORTHO05D008520 5.6e-14 83.2 221 32.6
Lsat_1_v5_gn_2_34620 Lactuca sativa HOM05D007535 ORTHO05D008520 4.7e-13 80.1 469 29.6
Os01g0966400 Oryza sativa ssp. japonica HOM05D007535 ORTHO05D008520 4.7e-13 80.1 350 29.7
PGR119G1786 Punica granatum HOM05D007535 ORTHO05D008520 4.7e-13 80.1 225 32.4
Migut.N02473 Erythranthe guttata HOM05D007535 ORTHO05D008520 1.1e-12 79.0 463 34.8
COL.COLO4_22633 Corchorus olitorius HOM05D007535 ORTHO05D008520 2.4e-12 77.8 191 31.9
arahy.Tifrunner.gnm1.ann1.ETK20Z Arachis hypogaea HOM05D007535 ORTHO05D008520 3.1e-12 77.4 502 35.5
CDE02G4009 Ceratophyllum demersum HOM05D007535 ORTHO05D008520 3.1e-12 77.4 494 27.3
CsaV3_1G015090 Cucumis sativus L. HOM05D007535 ORTHO05D008520 5.2e-12 76.6 286 28.0
Ciclev10028316m.g Citrus clementina HOM05D007535 ORTHO05D008520 6.8e-12 76.3 512 37.1
Oeu024409.1 Olea europaea HOM05D007535 ORTHO05D008520 1.2e-11 75.5 45 80.0
MD11G1168900 Malus domestica HOM05D007535 ORTHO05D008520 1.5e-11 75.1 142 35.9
CANSAT54G2250 Cannabis sativa HOM05D007535 ORTHO05D008520 2.6e-11 74.3 494 36.2
CSS0011293 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 2.2e-10 71.2 42 83.3
Hma1.2p1_2164F.1_g315720 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 3.2e-09 67.4 45 73.3
FAN25G1573 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.2e-08 65.5 45 66.7
CiPaw.14G097800 Carya illinoinensis HOM05D007535 ORTHO05D008520 2.7e-08 64.3 257 31.5
ATR0081G029 Amborella trichopoda HOM05D007535 ORTHO05D008520 3.5e-08 63.9 304 30.3
CSS0011895 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 6.0e-08 63.2 39 82.1
CARHR191220 Cardamine hirsuta HOM05D012474 ORTHO05D008520 4.3e-06 57.0 45 57.8
AT5G22320 Arabidopsis thaliana HOM05D012474 ORTHO05D008520 9.6e-06 55.8 45 55.6


User provided reference genes

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