Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08902 Davidia involucrata HOM05D007520 ORTHO05D009417 4.1e-78 294.7 149 100.0
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 3.4e-48 195.3 144 72.2
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 4.4e-48 194.9 134 75.4
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 1.1e-46 190.3 141 71.6
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 4.1e-46 188.3 143 65.7
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 5.4e-46 188.0 139 70.5
Lsat_1_v5_gn_5_170921 Lactuca sativa HOM05D007520 ORTHO05D009417 7.8e-45 184.1 144 68.1
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 1.0e-44 183.7 144 66.0
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 1.7e-44 183.0 142 69.7
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 3.0e-44 182.2 138 68.8
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 5.0e-44 181.4 144 66.0
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 8.6e-44 180.6 144 65.3
Atru.chr11.1007 Acer truncatum HOM05D007520 ORTHO05D009417 5.6e-43 177.9 131 72.5
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 6.2e-42 174.5 136 67.6
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 1.4e-41 173.3 135 65.9
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 6.8e-41 171.0 134 67.2
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 1.5e-40 169.9 136 64.7
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 2.6e-40 169.1 139 66.2
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 5.8e-40 167.9 136 66.2
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 5.8e-40 167.9 144 62.5
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 1.3e-39 166.8 144 62.5
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 3.7e-39 165.2 144 63.2
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 8.3e-39 164.1 134 64.9
GSVIVG01011596001 Vitis vinifera HOM05D007520 ORTHO05D009417 8.3e-39 164.1 116 72.4
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 1.4e-38 163.3 146 60.3
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 4.1e-38 161.8 139 64.0
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 5.4e-38 161.4 131 61.1
Lalb_Chr10g0094861 Lupinus albus HOM05D007520 ORTHO05D009417 9.2e-38 160.6 137 62.0
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 1.2e-37 160.2 131 64.1
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 6.0e-37 157.9 140 62.1
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 1.0e-36 157.1 137 61.3
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 1.0e-36 157.1 143 61.5
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 3.0e-36 155.6 149 58.4
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 3.0e-36 155.6 136 59.6
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 3.9e-36 155.2 135 63.0
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 3.9e-36 155.2 132 64.4
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 6.6e-36 154.5 142 54.9
Cc11_g05730 Coffea canephora HOM05D007520 ORTHO05D009417 8.6e-36 154.1 111 70.3
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 1.1e-35 153.7 142 61.3
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 1.5e-35 153.3 135 64.4
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 1.9e-35 152.9 135 63.7
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 2.5e-35 152.5 136 58.1
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 4.3e-35 151.8 115 67.8
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 5.6e-35 151.4 135 59.3
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 7.3e-35 151.0 135 60.0
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 1.6e-34 149.8 141 54.6
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 1.6e-34 149.8 143 60.1
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 2.8e-34 149.1 135 60.0
MSTRG.8107 Avicennia marina HOM05D007520 ORTHO05D009417 8.1e-34 147.5 105 69.5
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 1.4e-33 146.7 138 62.3
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 1.8e-33 146.4 135 60.0
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 2.4e-33 146.0 137 56.9
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 8.9e-33 144.1 135 60.0
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 8.9e-33 144.1 135 58.5
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 1.5e-32 143.3 131 61.8
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 2.6e-32 142.5 138 61.6
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 9.9e-32 140.6 135 57.8
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 1.3e-31 140.2 133 60.9
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 2.2e-31 139.4 133 60.2
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 2.2e-31 139.4 137 58.4
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 3.8e-31 138.7 137 59.1
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 1.4e-30 136.7 162 53.1
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 3.2e-30 135.6 149 47.7
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 9.2e-30 134.0 141 54.6
Atru.BG.295.p Acer truncatum HOM05D007520 ORTHO05D009417 2.1e-29 132.9 89 76.4
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 1.3e-28 130.2 139 52.5
PGSC0003DMG400013121 Solanum tuberosum HOM05D007520 ORTHO05D009417 6.6e-28 127.9 116 60.3
Carub.0005s0089 Capsella rubella HOM05D007520 ORTHO05D009417 5.6e-27 124.8 126 54.8
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 2.1e-26 122.9 137 51.8
SalBow4G2630 Salvia bowleyana HOM05D007520 ORTHO05D009417 3.4e-24 115.5 101 59.4
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 4.4e-24 115.2 82 73.2
FAN22G1570 Fragaria x ananassa HOM05D000296 ORTHO05D000175 7.6e-24 114.4 106 56.6
SalBow3G0394 Salvia bowleyana HOM05D007520 ORTHO05D009417 9.9e-24 114.0 89 66.3
SalBow6G7185 Salvia bowleyana HOM05D007520 ORTHO05D009417 9.9e-24 114.0 89 66.3
SalBow2G3493 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.7e-23 113.2 88 67.0
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 3.8e-23 112.1 95 60.0
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 3.8e-23 112.1 95 60.0
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 8.4e-23 110.9 95 58.9
CSS0024703 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 2.7e-21 105.9 58 84.5
CSS0008274 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.0e-20 104.0 58 82.8
Haze_10814 Corylus avellana HOM05D007520 ORTHO05D009417 1.7e-20 103.2 76 65.8
Hma1.2p1_0095F.1_g047530 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 4.3e-19 98.6 184 39.7
CSS0003025 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 2.1e-18 96.3 58 77.6
HPP92_016406 Vanilla planifolia HOM05D007520 ORTHO05D009417 6.9e-17 91.3 69 66.7
DCAR_002655 Daucus carota HOM05D007520 ORTHO05D009417 2.9e-15 85.9 66 68.2
Rhsim09G0085600 Rhododendron simsii HOM05D007520 ORTHO05D009417 6.4e-15 84.7 66 69.7
Lj3A859T72 Lonicera japonica HOM05D007520 ORTHO05D009417 7.1e-14 81.3 87 56.3
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 2.7e-13 79.3 78 55.1
Glyma.14G224300 Glycine max HOM05D007520 ORTHO05D009417 1.8e-12 76.6 65 63.1
Pp3c10_19450 Physcomitrium patens HOM05D007520 ORTHO05D009417 6.7e-12 74.7 131 29.0
Mapoly0059s0009 Marchantia polymorpha HOM05D007520 ORTHO05D009417 8.1e-10 67.8 137 32.8


User provided reference genes

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