Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 7.8e-169 597.0 303 100.0
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 2.1e-113 412.9 309 70.2
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 2.1e-113 412.9 303 68.0
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 1.2e-103 380.6 303 64.7
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 4.4e-103 378.6 314 63.1
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 7.5e-103 377.9 314 63.1
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 1.7e-102 376.7 307 63.5
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 2.4e-101 372.9 329 62.9
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 3.1e-101 372.5 328 61.3
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 5.4e-101 371.7 309 63.4
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 1.1e-98 364.0 303 65.0
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 2.5e-98 362.8 304 62.2
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 7.2e-98 361.3 309 62.8
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 9.5e-98 360.9 303 63.4
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 1.6e-97 360.1 306 62.4
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 3.6e-97 359.0 304 61.8
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 1.4e-96 357.1 303 61.7
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 1.8e-96 356.7 305 61.3
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 2.3e-96 356.3 304 59.9
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 8.8e-96 354.4 305 60.7
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 8.8e-96 354.4 304 60.5
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 1.2e-95 354.0 305 62.0
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 3.4e-95 352.4 304 61.8
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 3.4e-95 352.4 310 60.3
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 1.3e-94 350.5 303 61.7
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 3.7e-94 349.0 303 60.4
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 3.1e-93 345.9 311 59.2
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 3.1e-93 345.9 297 60.3
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 9.2e-93 344.4 305 59.0
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 4.5e-92 342.0 302 59.6
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 5.9e-92 341.7 306 58.8
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 2.3e-91 339.7 284 63.7
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 1.1e-90 337.4 306 58.8
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 1.5e-90 337.0 306 58.8
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 7.3e-90 334.7 256 68.0
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 1.2e-89 334.0 306 58.2
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 1.6e-89 333.6 326 54.9
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 1.0e-88 330.9 350 52.6
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 4.0e-88 328.9 302 59.9
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 4.0e-88 328.9 310 57.7
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 6.8e-88 328.2 304 57.9
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 2.0e-87 326.6 313 58.1
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 1.3e-86 323.9 306 59.5
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 1.3e-86 323.9 275 62.9
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 2.2e-86 323.2 312 57.1
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 8.3e-86 321.2 307 56.4
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 1.8e-85 320.1 313 56.5
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 1.8e-85 320.1 307 58.0
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 1.8e-85 320.1 310 55.8
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 1.6e-84 317.0 307 57.7
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 2.0e-84 316.6 309 56.6
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 2.0e-84 316.6 313 57.8
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 4.6e-84 315.5 305 57.4
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 5.9e-84 315.1 303 56.4
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 5.9e-84 315.1 307 57.3
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 7.8e-84 314.7 308 57.1
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 4.3e-82 308.9 312 53.2
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 5.6e-82 308.5 317 55.8
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 7.3e-82 308.1 266 59.8
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 2.1e-81 306.6 317 52.4
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 1.4e-80 303.9 327 53.2
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 5.2e-80 302.0 315 52.1
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 6.8e-80 301.6 315 52.4
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 1.3e-78 297.4 315 51.1
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 1.3e-78 297.4 317 51.4
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 2.2e-78 296.6 319 50.8
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 2.2e-78 296.6 389 47.6
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 1.4e-77 293.9 319 51.1
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 2.4e-77 293.1 320 49.1
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 3.2e-77 292.7 317 50.8
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 2.0e-76 290.0 328 50.3
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 5.0e-75 285.4 217 67.7
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.4e-72 277.3 305 50.8
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 6.4e-70 268.5 210 64.3
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 1.2e-68 264.2 298 49.7
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 4.6e-68 262.3 303 48.2
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 6.0e-68 261.9 437 40.7
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 7.8e-68 261.5 305 50.2
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 3.9e-67 259.2 303 52.5
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 2.1e-65 253.4 326 47.5
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 6.2e-65 251.9 330 48.2
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 3.1e-64 249.6 295 48.8
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 6.8e-64 248.4 353 45.9
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 6.8e-64 248.4 311 48.6
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 6.8e-64 248.4 332 45.8
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 8.9e-64 248.1 200 60.0
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 4.4e-63 245.7 193 64.8
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 4.6e-60 235.7 195 61.0
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 4.6e-60 235.7 307 47.6
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 5.6e-58 228.8 308 45.8
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 6.9e-56 221.9 194 59.8
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 1.2e-55 221.1 262 46.2
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 5.4e-53 212.2 314 42.0
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 1.6e-52 210.7 332 42.5
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 3.6e-49 199.5 340 38.2
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 2.4e-48 196.8 171 60.2
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 3.1e-48 196.4 194 58.8
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 1.2e-47 194.5 369 36.0
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 1.7e-46 190.7 333 40.5
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 2.9e-46 189.9 456 32.5
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 3.5e-44 183.0 218 50.0
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 5.6e-42 175.6 151 60.3
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 9.0e-40 168.3 242 45.0
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 4.5e-39 166.0 273 38.8
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 6.7e-35 152.1 314 36.9
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 3.8e-30 136.3 171 41.5
BcaB02g08416 Brassica carinata HOM05D006096 ORTHO05D007775 1.3e-25 121.3 88 70.5
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 1.4e-19 101.3 85 58.8
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 1.8e-19 100.9 128 43.8
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.3e-17 94.7 54 83.3
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 4.8e-17 92.8 205 30.2
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 1.1e-16 91.7 87 49.4
Actinidia28243 Actinidia chinensis HOM05D006096 ORTHO05D009823 3.1e-16 90.1 150 38.7
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 5.3e-16 89.4 222 31.1
Nitab4.5_0004570g0030 Nicotiana tabacum HOM05D006096 ORTHO05D007775 4.2e-13 79.7 75 56.0
CsaV3_UNG160180 Cucumis sativus L. HOM05D006096 ORTHO05D007775 2.1e-12 77.4 88 48.9
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 4.7e-12 76.3 59 66.1
CsaV3_UNG124970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.1e-10 71.6 69 53.6
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.1e-10 71.6 95 43.2
Ah.02g123840 Amaranthus hybridus HOM05D006096 ORTHO05D007775 2.9e-06 57.0 71 53.5


User provided reference genes

Program Settings